Rh3AG160600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0013519
Physical Location & Seq
Forward (+)
14780585 .. 14783245
2661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG160600.1

Sequence Viewer

Length: 288 bp
ATGTCCCGCAAAGGAGGAGGAGCTCCGGCTTCACTGCCAAAGGACGTACCTTGGAGGGCCTCAAACTCCAGACCCGTCCCCAAAATCCACCACTCCCCTATTCTGCGTGTGCCCCAAAACCCCACTACCAATTATGCAATCTCCGTCATGAAGCACCCCAATCCGGTAGGAAATGGGTTGGCCAGGGACGCCATTGTGGAAGCGGCAGGACCCGATTGCATTGTTCCGGGTCAAGTCACACCCGTCAAATTACTTGGTCTCAAGGTAAAAAATAAGGGCCCCTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.02

Weight (kDa)

10.51

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36835
fragaria_vesca FvH4_6g16650 FvH4_6g16650 FvH4_6g16650
malus_domestica MD04G1090000.v1.1 MD12G1108500.v1.1
prunus_persica Prupe.7G126900_v2.0.a1
pyrus_communis pycom04g08510
rosa_chinensis RchiOBHm_Chr3g0470611
rosa_laevigata RLG00000024254
rosa_multiflora Rmu_sc0002115.1_g000019
rosa_roxburghii Rroxscaffold_6G00410690
rosa_rugosa Rorug03G0110500
rosa_samantha Rh3AG160600 Rh3BG185100 Rh3CG175600 Rh3DG189600
rosa_wichuraiana Rw3G015180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 7, 203
AcoI YGGCCR 1 cut(s) 180
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 48
AfiI CCNNNNNNNGG 1 cut(s) 163
AjnI CCWGG 1 cut(s) 182
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
Alw21I GWGCWC 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 263
AoxI GGCC 3 cut(s) 57, 180, 277
ApaI GGGCCC 1 cut(s) 281
AspS9I GGNCC 4 cut(s) 57, 209, 277, 278
AsuC2I CCSGG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 209
BaeGI GKGCMC 2 cut(s) 114, 281
BalI TGGCCA 1 cut(s) 182
BanII GRGCYC 2 cut(s) 25, 281
Bbv12I GWGCWC 1 cut(s) 25
BciT130I CCWGG 1 cut(s) 184
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 1 cut(s) 263
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 184, 228
Bme18I GGWCC 1 cut(s) 209
BmgT120I GGNCC 4 cut(s) 57, 209, 277, 278
BmiI GGNNCC 3 cut(s) 211, 279, 280
BmrFI CCNGG 2 cut(s) 184, 228
BpmI CTGGAG 1 cut(s) 52
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 189
BsaI GGTCTC 1 cut(s) 263
BsaJI CCNNGG 2 cut(s) 50, 183
BsaWI WCCGGW 1 cut(s) 163
Bsc4I CCNNNNNNNGG 1 cut(s) 163
BseBI CCWGG 1 cut(s) 184
BseDI CCNNGG 2 cut(s) 50, 183
BseLI CCNNNNNNNGG 1 cut(s) 163
BseRI GAGGAG 2 cut(s) 30, 33
BseSI GKGCMC 2 cut(s) 114, 281
BshFI GGCC 3 cut(s) 59, 182, 279
BsiHKAI GWGCWC 1 cut(s) 25
BsiSI CCGG 3 cut(s) 26, 164, 227
BslFI GGGAC 2 cut(s) 62, 200
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 2 cut(s) 62, 200
BsnI GGCC 3 cut(s) 59, 182, 279
Bso31I GGTCTC 1 cut(s) 263
Bsp120I GGGCCC 1 cut(s) 277
Bsp1286I GDGCHC 3 cut(s) 25, 114, 281
BspACI CCGC 2 cut(s) 7, 203
BspANI GGCC 3 cut(s) 59, 182, 279
BspHI TCATGA 1 cut(s) 147
BspLI GGNNCC 3 cut(s) 211, 279, 280
BspTNI GGTCTC 1 cut(s) 263
BssECI CCNNGG 2 cut(s) 50, 183
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 189
BstMAI GTCTC 1 cut(s) 263
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 1 cut(s) 184
BstSCI CCNGG 2 cut(s) 182, 226
BstSLI GKGCMC 2 cut(s) 114, 281
BsuRI GGCC 3 cut(s) 59, 182, 279
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
CciI TCATGA 1 cut(s) 147
Cfr13I GGNCC 4 cut(s) 57, 209, 277, 278
CseI GACGC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 47
CviAII CATG 1 cut(s) 148
CviJI RGCY 5 cut(s) 23, 29, 59, 182, 279
CviKI_1 RGCY 5 cut(s) 23, 29, 59, 182, 279
CviQI GTAC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 2 cut(s) 25, 281
Eco31I GGTCTC 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 209
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoO109I RGGNCCY 4 cut(s) 57, 209, 277, 278
EcoRII CCWGG 1 cut(s) 182
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 2 cut(s) 25, 281
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 135, 149
FalI AAGNNNNNCTT 1 cut(s) 266
FaqI GGGAC 2 cut(s) 62, 200
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 1 cut(s) 204
FriOI GRGCYC 2 cut(s) 25, 281
Fsp4HI GCNGC 1 cut(s) 204
GluI GCNGC 1 cut(s) 204
GsuI CTGGAG 1 cut(s) 52
HaeIII GGCC 3 cut(s) 59, 182, 279
HapII CCGG 3 cut(s) 26, 164, 227
HgaI GACGC 1 cut(s) 197
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 151
HpaII CCGG 3 cut(s) 26, 164, 227
Hpy188III TCNNGA 2 cut(s) 69, 148
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 2 cut(s) 137, 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
HpySE526I ACGT 1 cut(s) 45
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 151
LmnI GCTCC 2 cut(s) 20, 28
LpnPI CCDG 7 cut(s) 39, 82, 169, 177, 192, 196, 240
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 235
MhlI GDGCHC 3 cut(s) 25, 114, 281
MlsI TGGCCA 1 cut(s) 182
MluCI AATT 2 cut(s) 130, 248
MluNI TGGCCA 1 cut(s) 182
MnlI CCTC 4 cut(s) 8, 11, 48, 70
Mox20I TGGCCA 1 cut(s) 182
MscI TGGCCA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 182
MspI CCGG 3 cut(s) 26, 164, 227
MspR9I CCNGG 2 cut(s) 184, 228
MvaI CCWGG 1 cut(s) 184
MwoI GCNNNNNNNGC 1 cut(s) 188
NciI CCSGG 1 cut(s) 228
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 3 cut(s) 211, 279, 280
NmuCI GTSAC 1 cut(s) 235
PagI TCATGA 1 cut(s) 147
PkrI GCNGC 1 cut(s) 205
PpuMI RGGWCCY 1 cut(s) 209
Psp124BI GAGCTC 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 182
PspGI CCWGG 1 cut(s) 182
PspN4I GGNNCC 3 cut(s) 211, 279, 280
PspOMI GGGCCC 1 cut(s) 277
PspPI GGNCC 4 cut(s) 57, 209, 277, 278
PspPPI RGGWCCY 1 cut(s) 209
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SacI GAGCTC 1 cut(s) 25
SatI GCNGC 1 cut(s) 204
Sau96I GGNCC 4 cut(s) 57, 209, 277, 278
ScrFI CCNGG 2 cut(s) 184, 228
SduI GDGCHC 3 cut(s) 25, 114, 281
SetI ASST 4 cut(s) 25, 48, 52, 267
SinI GGWCC 1 cut(s) 209
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 2 cut(s) 130, 248
SsiI CCGC 2 cut(s) 7, 203
SstI GAGCTC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 182, 226
StyI CCWWGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 48
TasI AATT 2 cut(s) 130, 248
TauI GCSGC 1 cut(s) 206
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.