FvH4_6g16650

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013519
Physical Location & Seq
Forward (+)
10559366 .. 10561755
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16650.t3

Sequence Viewer

Length: 381 bp
ATGTCCCGCAAAGGAGGAGCTGCGGCTTCACTGCCAAAGGACGCACCTTGGAGGGCCTCAAACGCCAGACCCCTCCCCAGAATCCACCATTCCCCTATTCTTCGTGTCCCCCAAAACCCCACTACAAATTACGCAATCTACGTCATGAAGCAACCCAATCCGGTTGGAACCGGGTTGGCCAGGGACGCCATTGTGGAAGCGGCTGGACCCGATTGCATTGTTCCGGGTCAAGTCACACCCGTCAAATTACTTGGTCTTAAGGTATGGCCTATTGAAGTTGACCTACAATTTTTGCAACCCGTTGGACGTGAGCTTAAGTCGATTGGAAAGTTCATGGATGATGCTGTCAATCTCATGAATAAATCATTTATAGATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.75

Weight (kDa)

9.84

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36835
fragaria_vesca FvH4_6g16650 FvH4_6g16650 FvH4_6g16650
malus_domestica MD04G1090000.v1.1 MD12G1108500.v1.1
prunus_persica Prupe.7G126900_v2.0.a1
pyrus_communis pycom04g08510
rosa_chinensis RchiOBHm_Chr3g0470611
rosa_laevigata RLG00000024254
rosa_multiflora Rmu_sc0002115.1_g000019
rosa_roxburghii Rroxscaffold_6G00410690
rosa_rugosa Rorug03G0110500
rosa_samantha Rh3AG160600 Rh3BG185100 Rh3CG175600 Rh3DG189600
rosa_wichuraiana Rw3G015180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 7, 23, 200
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 186
AflII CTTAAG 2 cut(s) 257, 314
AgsI TTSAA 1 cut(s) 275
AjiI CACGTC 1 cut(s) 308
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 2 cut(s) 20, 313
AluI AGCT 2 cut(s) 20, 313
AoxI GGCC 3 cut(s) 54, 177, 266
ApeKI GCWGC 1 cut(s) 20
AspS9I GGNCC 2 cut(s) 54, 206
AsuC2I CCSGG 2 cut(s) 172, 225
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 179
BarI GAAGNNNNNNTAC 2 cut(s) 267, 299
BbvI GCAGC 1 cut(s) 7
BciT130I CCWGG 1 cut(s) 181
BcnI CCSGG 2 cut(s) 172, 225
BfaI CTAG 1 cut(s) 379
BfrI CTTAAG 2 cut(s) 257, 314
BisI GCNGC 3 cut(s) 21, 24, 201
BlsI GCNGC 3 cut(s) 22, 25, 202
Bme1390I CCNGG 3 cut(s) 172, 181, 225
Bme18I GGWCC 1 cut(s) 206
BmgBI CACGTC 1 cut(s) 308
BmgT120I GGNCC 2 cut(s) 54, 206
BmiI GGNNCC 2 cut(s) 169, 208
BmrFI CCNGG 3 cut(s) 172, 181, 225
BmsI GCATC 1 cut(s) 331
BpuMI CCSGG 2 cut(s) 172, 225
BsaHI GRCGYC 1 cut(s) 186
BsaJI CCNNGG 2 cut(s) 47, 180
BsaWI WCCGGW 1 cut(s) 160
BseBI CCWGG 1 cut(s) 181
BseDI CCNNGG 2 cut(s) 47, 180
BseGI GGATG 1 cut(s) 343
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 3 cut(s) 56, 179, 268
BsiSI CCGG 3 cut(s) 161, 171, 224
BslFI GGGAC 2 cut(s) 92, 197
BsmFI GGGAC 2 cut(s) 92, 197
BsnI GGCC 3 cut(s) 56, 179, 268
Bsp143I GATC 1 cut(s) 373
BspACI CCGC 3 cut(s) 7, 23, 200
BspANI GGCC 3 cut(s) 56, 179, 268
BspHI TCATGA 2 cut(s) 144, 354
BspLI GGNNCC 2 cut(s) 169, 208
BspTI CTTAAG 2 cut(s) 257, 314
BssECI CCNNGG 2 cut(s) 47, 180
BssMI GATC 1 cut(s) 373
BssNI GRCGYC 1 cut(s) 186
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 186
BstAFI CTTAAG 2 cut(s) 257, 314
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 1 cut(s) 376
BstMBI GATC 1 cut(s) 373
BstMWI GCNNNNNNNGC 2 cut(s) 62, 185
BstNI CCWGG 1 cut(s) 181
BstSCI CCNGG 3 cut(s) 170, 179, 223
BstV1I GCAGC 1 cut(s) 7
BsuRI GGCC 3 cut(s) 56, 179, 268
BtrI CACGTC 1 cut(s) 308
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 29
BtsIMutI CAGTG 1 cut(s) 29
CciI TCATGA 2 cut(s) 144, 354
Cfr13I GGNCC 2 cut(s) 54, 206
CseI GACGC 2 cut(s) 50, 194
CviAII CATG 3 cut(s) 145, 334, 355
CviJI RGCY 7 cut(s) 20, 26, 56, 179, 203, 268, 313
CviKI_1 RGCY 7 cut(s) 20, 26, 56, 179, 203, 268, 313
DpnI GATC 1 cut(s) 375
DpnII GATC 1 cut(s) 373
EaeI YGGCCR 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 1 cut(s) 206
EcoO109I RGGNCCY 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 179
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 3 cut(s) 148, 337, 358
FaiI YATR 5 cut(s) 146, 265, 335, 356, 371
FaqI GGGAC 2 cut(s) 92, 197
FatI CATG 3 cut(s) 144, 333, 354
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 3 cut(s) 21, 24, 201
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 3 cut(s) 21, 24, 201
FspBI CTAG 1 cut(s) 379
GluI GCNGC 3 cut(s) 21, 24, 201
HaeIII GGCC 3 cut(s) 56, 179, 268
HapII CCGG 3 cut(s) 161, 171, 224
HgaI GACGC 2 cut(s) 50, 194
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 3 cut(s) 148, 337, 358
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 1 cut(s) 81
HpaII CCGG 3 cut(s) 161, 171, 224
Hpy166II GTNNAC 1 cut(s) 280
Hpy188III TCNNGA 2 cut(s) 145, 355
Hpy8I GTNNAC 1 cut(s) 280
HpyCH4IV ACGT 2 cut(s) 141, 307
HpyCH4V TGCA 2 cut(s) 216, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 185
HpySE526I ACGT 2 cut(s) 141, 307
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 3 cut(s) 148, 337, 358
Kzo9I GATC 1 cut(s) 373
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 8 cut(s) 79, 91, 166, 174, 184, 189, 193, 237
Lsp1109I GCAGC 1 cut(s) 7
LweI GCATC 1 cut(s) 331
MaeI CTAG 1 cut(s) 379
MaeII ACGT 2 cut(s) 141, 307
MaeIII GTNAC 1 cut(s) 232
MalI GATC 1 cut(s) 375
MboI GATC 1 cut(s) 373
MboII GAAGA 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 179
MluCI AATT 3 cut(s) 127, 245, 287
MluNI TGGCCA 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 145, 283
MnlI CCTC 4 cut(s) 8, 45, 67, 83
Mox20I TGGCCA 1 cut(s) 179
MscI TGGCCA 1 cut(s) 179
MseI TTAA 2 cut(s) 258, 315
Msp20I TGGCCA 1 cut(s) 179
MspCI CTTAAG 2 cut(s) 257, 314
MspI CCGG 3 cut(s) 161, 171, 224
MspR9I CCNGG 3 cut(s) 172, 181, 225
MvaI CCWGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 62, 185
NciI CCSGG 2 cut(s) 172, 225
NdeII GATC 1 cut(s) 373
NlaIII CATG 3 cut(s) 148, 337, 358
NlaIV GGNNCC 2 cut(s) 169, 208
NmuCI GTSAC 1 cut(s) 232
PagI TCATGA 2 cut(s) 144, 354
PcsI WCGNNNNNNNCGW 1 cut(s) 138
PfeI GAWTC 1 cut(s) 81
PkrI GCNGC 3 cut(s) 22, 25, 202
Psp6I CCWGG 1 cut(s) 179
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 2 cut(s) 169, 208
PspPI GGNCC 2 cut(s) 54, 206
SaqAI TTAA 2 cut(s) 258, 315
SatI GCNGC 3 cut(s) 21, 24, 201
Sau3AI GATC 1 cut(s) 373
Sau96I GGNCC 2 cut(s) 54, 206
ScrFI CCNGG 3 cut(s) 172, 181, 225
SetI ASST 7 cut(s) 22, 49, 144, 264, 285, 310, 315
SfaNI GCATC 1 cut(s) 331
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 2 cut(s) 257, 314
SmoI CTYRAG 2 cut(s) 257, 314
Sse9I AATT 3 cut(s) 127, 245, 287
SsiI CCGC 3 cut(s) 7, 23, 200
SspMI CTAG 1 cut(s) 379
StyD4I CCNGG 3 cut(s) 170, 179, 223
StyI CCWWGG 1 cut(s) 47
TaiI ACGT 2 cut(s) 144, 310
TaqI TCGA 1 cut(s) 320
TasI AATT 3 cut(s) 127, 245, 287
TauI GCSGC 2 cut(s) 26, 203
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 258, 315
Tru9I TTAA 2 cut(s) 258, 315
TscAI CASTG 1 cut(s) 36
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 161, 322, 371
TspRI CASTG 1 cut(s) 36
Vha464I CTTAAG 2 cut(s) 257, 314
VpaK11BI GGWCC 1 cut(s) 206
XspI CTAG 1 cut(s) 379
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.