Prupe.7G126900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0013519
Physical Location & Seq
Reverse (-)
14805321 .. 14808079
2759 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G126900.1

Sequence Viewer

Length: 384 bp
ATGTCCCGTAAAGGAGGAGGAGGTGGTTCTTCACTGCCAAAGGACGTGCCTTGGAGGGCCTCAAACACCAAACCCATACCCAAAATTCACCATTCCCCTGTTCTCCGAATAACCCAGAACCCTACTTCCAATTATGCCATCTCTGTCATGAAGCACCCGAACCCGGTAGGAAGTGGGTTAGCAATGGAAGCCATAGTGGAAGCAGCAGGCCCTGAGTGCATTGTCCCGGGACAAGTTACACCTATCAAGTTACTTGGTGTCAAGGTATGGCCTATTGAAGTTAACTTGAAATTTTTGGAACCAGTTGGACGAGAGCTCAAGCAGCTTGGAAAGTTCATGGATGATGCTGTCAATCTCATGAATAAATCATTCATAGATCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.75

Weight (kDa)

9.72

Isoelectric Point (pI)

37.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013519)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36835
fragaria_vesca FvH4_6g16650 FvH4_6g16650 FvH4_6g16650
malus_domestica MD04G1090000.v1.1 MD12G1108500.v1.1
prunus_persica Prupe.7G126900_v2.0.a1
pyrus_communis pycom04g08510
rosa_chinensis RchiOBHm_Chr3g0470611
rosa_laevigata RLG00000024254
rosa_multiflora Rmu_sc0002115.1_g000019
rosa_roxburghii Rroxscaffold_6G00410690
rosa_rugosa Rorug03G0110500
rosa_samantha Rh3AG160600 Rh3BG185100 Rh3CG175600 Rh3DG189600
rosa_wichuraiana Rw3G015180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 84, 290
AfiI CCNNNNNNNGG 1 cut(s) 163
AgsI TTSAA 2 cut(s) 278, 289
AjiI CACGTC 1 cut(s) 46
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 316, 325
AluI AGCT 2 cut(s) 316, 325
Alw21I GWGCWC 1 cut(s) 318
AlwNI CAGNNNCTG 1 cut(s) 212
Ama87I CYCGRG 1 cut(s) 226
AoxI GGCC 3 cut(s) 57, 208, 269
ApeKI GCWGC 2 cut(s) 203, 322
ApoI RAATTY 2 cut(s) 84, 290
AspS9I GGNCC 2 cut(s) 57, 209
AsuC2I CCSGG 3 cut(s) 164, 227, 228
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 226
BanII GRGCYC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 318
BbvI GCAGC 2 cut(s) 215, 334
BccI CCATC 1 cut(s) 146
BcnI CCSGG 3 cut(s) 164, 227, 228
BfaI CTAG 1 cut(s) 382
BisI GCNGC 2 cut(s) 204, 323
BlsI GCNGC 2 cut(s) 205, 324
Bme1390I CCNGG 3 cut(s) 164, 227, 228
BmeT110I CYCGRG 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 46
BmgT120I GGNCC 2 cut(s) 57, 209
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 3 cut(s) 164, 227, 228
BmsI GCATC 1 cut(s) 334
BpuEI CTTGAG 1 cut(s) 302
BpuMI CCSGG 3 cut(s) 164, 227, 228
BsaJI CCNNGG 2 cut(s) 50, 226
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse1I ACTGG 1 cut(s) 302
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 50, 226
BseGI GGATG 1 cut(s) 346
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 302
BseRI GAGGAG 2 cut(s) 30, 33
BseXI GCAGC 2 cut(s) 215, 334
BshFI GGCC 3 cut(s) 59, 210, 271
BsiHKAI GWGCWC 1 cut(s) 318
BsiHKCI CYCGRG 1 cut(s) 226
BsiSI CCGG 2 cut(s) 164, 227
BslFI GGGAC 2 cut(s) 209, 243
BslI CCNNNNNNNGG 1 cut(s) 163
BsmFI GGGAC 2 cut(s) 209, 243
BsnI GGCC 3 cut(s) 59, 210, 271
BsoBI CYCGRG 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 318
Bsp143I GATC 1 cut(s) 376
BspANI GGCC 3 cut(s) 59, 210, 271
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 2 cut(s) 147, 357
BspLI GGNNCC 1 cut(s) 300
BsrDI GCAATG 1 cut(s) 189
BsrI ACTGG 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 50, 226
BssMI GATC 1 cut(s) 376
BssT1I CCWWGG 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 1 cut(s) 213
BstF5I GGATG 1 cut(s) 346
BstKTI GATC 1 cut(s) 379
BstMBI GATC 1 cut(s) 376
BstMWI GCNNNNNNNGC 3 cut(s) 188, 216, 322
BstSCI CCNGG 3 cut(s) 162, 225, 226
BstV1I GCAGC 2 cut(s) 215, 334
BsuRI GGCC 3 cut(s) 59, 210, 271
BtrI CACGTC 1 cut(s) 46
BtsCI GGATG 1 cut(s) 346
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 208
CaiI CAGNNNCTG 1 cut(s) 212
CciI TCATGA 2 cut(s) 147, 357
Cfr13I GGNCC 2 cut(s) 57, 209
Cfr9I CCCGGG 1 cut(s) 226
CviAII CATG 3 cut(s) 148, 337, 358
CviJI RGCY 6 cut(s) 59, 191, 210, 271, 316, 325
CviKI_1 RGCY 6 cut(s) 59, 191, 210, 271, 316, 325
DdeI CTNAG 1 cut(s) 213
DpnI GATC 1 cut(s) 378
DpnII GATC 1 cut(s) 376
Ecl136II GAGCTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 318
Eco53kI GAGCTC 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 226
EcoICRI GAGCTC 1 cut(s) 316
EcoO109I RGGNCCY 2 cut(s) 57, 209
EcoT14I CCWWGG 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 318
ErhI CCWWGG 1 cut(s) 50
FaeI CATG 3 cut(s) 151, 340, 361
FaiI YATR 8 cut(s) 77, 135, 149, 194, 268, 338, 359, 374
FaqI GGGAC 2 cut(s) 209, 243
FatI CATG 3 cut(s) 147, 336, 357
Fnu4HI GCNGC 2 cut(s) 204, 323
FokI GGATG 1 cut(s) 353
FriOI GRGCYC 1 cut(s) 318
Fsp4HI GCNGC 2 cut(s) 204, 323
FspBI CTAG 1 cut(s) 382
GluI GCNGC 2 cut(s) 204, 323
HaeIII GGCC 3 cut(s) 59, 210, 271
HapII CCGG 2 cut(s) 164, 227
Hin1II CATG 3 cut(s) 151, 340, 361
HincII GTYRAC 1 cut(s) 283
HindII GTYRAC 1 cut(s) 283
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 2 cut(s) 164, 227
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 283
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 2 cut(s) 148, 358
Hpy8I GTNNAC 1 cut(s) 283
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 216, 322
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 1 cut(s) 45
Hsp92II CATG 3 cut(s) 151, 340, 361
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 1 cut(s) 376
LpnPI CCDG 7 cut(s) 111, 128, 177, 192, 225, 240, 315
Lsp1109I GCAGC 2 cut(s) 215, 334
LweI GCATC 1 cut(s) 334
MaeI CTAG 1 cut(s) 382
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 2 cut(s) 235, 249
MalI GATC 1 cut(s) 378
MboI GATC 1 cut(s) 376
MboII GAAGA 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 318
MluCI AATT 3 cut(s) 84, 130, 290
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 5 cut(s) 8, 11, 14, 48, 70
MseI TTAA 1 cut(s) 282
MspI CCGG 2 cut(s) 164, 227
MspR9I CCNGG 3 cut(s) 164, 227, 228
MwoI GCNNNNNNNGC 3 cut(s) 188, 216, 322
NciI CCSGG 3 cut(s) 164, 227, 228
NdeII GATC 1 cut(s) 376
NlaIII CATG 3 cut(s) 151, 340, 361
NlaIV GGNNCC 1 cut(s) 300
PagI TCATGA 2 cut(s) 147, 357
PkrI GCNGC 2 cut(s) 205, 324
Psp124BI GAGCTC 1 cut(s) 318
PspN4I GGNNCC 1 cut(s) 300
PspPI GGNCC 2 cut(s) 57, 209
PstNI CAGNNNCTG 1 cut(s) 212
SacI GAGCTC 1 cut(s) 318
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 204, 323
Sau3AI GATC 1 cut(s) 376
Sau96I GGNCC 2 cut(s) 57, 209
ScrFI CCNGG 3 cut(s) 164, 227, 228
SduI GDGCHC 1 cut(s) 318
SetI ASST 6 cut(s) 25, 48, 244, 267, 318, 327
SfaNI GCATC 1 cut(s) 334
SmaI CCCGGG 1 cut(s) 228
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 3 cut(s) 84, 130, 290
SspMI CTAG 1 cut(s) 382
SstI GAGCTC 1 cut(s) 318
StyD4I CCNGG 3 cut(s) 162, 225, 226
StyI CCWWGG 1 cut(s) 50
TaiI ACGT 1 cut(s) 48
TasI AATT 3 cut(s) 84, 130, 290
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 39
TseI GCWGC 2 cut(s) 203, 322
TspDTI ATGAA 4 cut(s) 164, 325, 361, 374
TspMI CCCGGG 1 cut(s) 226
TspRI CASTG 1 cut(s) 39
XapI RAATTY 2 cut(s) 84, 290
XmaI CCCGGG 1 cut(s) 226
XspI CTAG 1 cut(s) 382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.