AT2G36980

PPR repeat

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
15530814 .. 15533265
2452 bp
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UTR
Exon/CDS
Intron
AT2G36980.1

Sequence Viewer

Length: 1878 bp
ATGTCTGTTTTGGTTCGTCTTACTTCAAAGATTGCGTCTTTGGCAAAATCAGGTCGCATAGCAAGTGCCCGTCAGGTGTTCGACGGAATGCCTGAGCTAGATACTGTGGCGTGGAACACCATGTTGACGAGCTATTCTCGTTTGGGTTTACATCAGGAAGCTATAGCTCTGTTCACCCAGTTGAGATTCTCCGACGCTAAGCCTGATGATTATTCGTTTACAGCAATCTTGAGCACTTGTGCGAGTCTAGGGAATGTTAAATTCGGAAGAAAGATTCAGTCTTTAGTTATTCGGTCTGGGTTTTGTGCTTCTTTGCCGGTTAATAATTCGCTTATTGACATGTATGGTAAGTGCTCTGATACTCTTAGCGCAAACAAAGTGTTTCGAGATATGTGCTGTGATAGTAGAAATGAAGTAACTTGGTGCTCACTTTTGTTTGCCTACATGAATGCTGAACAGTTTGAAGCTGCACTTGATGTTTTTGTTGAAATGCCGAAAAGGGTGGCATTTGCTTGGAATATAATGATCTCAGGGCATGCTCACTGTGGAAAGCTTGAATCTTGTTTAAGTTTATTCAAAGAGATGCTGGAAAGTGAGTTCAAACCGGATTGTTATACGTTTAGTTCTTTGATGAATGCTTGTTCTGCTGATTCATCAAACGTGGTTTATGGACGGATGGTACATGCTGTTATGTTGAAGAATGGATGGTCTTCTGCGGTTGAGGCAAAAAATTCTGTGTTAAGTTTCTACACGAAATTAGGCAGCAGAGATGATGCCATGAGAGAGCTTGAGTCTATTGAAGTTCTGACGCAGGTATCCTGGAATTCTATTATTGACGCGTGTATGAAAATTGGAGAAACAGAGAAAGCTCTTGAGGTGTTTCATCTAGCCCCTGAGAAAAATATCGTTACTTGGACTACTATGATTACAGGATATGGTAGGAATGGAGATGGTGAGCAAGCACTGAGATTTTTTGTCGAAATGATGAAATCTGGAGTGGATTCAGATCATTTTGCATATGGTGCAGTTCTTCATGCATGTTCAGGTTTAGCCCTTTTAGGACATGGAAAAATGATCCATGGTTGTCTGATTCATTGTGGGTTTCAAGGTTATGCTTATGTTGGTAACGCGTTGGTTAATTTGTATGCAAAGTGTGGAGATATTAAAGAGGCAGACCGTGCGTTTGGTGATATAGCTAACAAGGATTTGGTATCTTGGAACACAATGCTTTTTGCATTTGGTGTCCACGGGTTAGCAGATCAAGCTTTAAAGCTCTATGACAATATGATAGCATCAGGGATTAAACCAGACAATGTGACATTCATTGGATTGCTGACAACTTGCAGTCATTCAGGCCTTGTAGAGGAAGGTTGCATGATTTTCGAATCCATGGTTAAAGATTATAGAATCCCATTGGAAGTAGATCATGTAACATGTATGATAGATATGTTTGGAAGAGGTGGACATTTAGCAGAAGCAAAAGACTTGGCGACAACTTACAGTTCACTTGTCACCGACTCTAGTAATAATAGTTCATGGGAAACTCTTTTAGGTGCTTGTTCTACACATTGGCATACAGAATTAGGTAGAGAAGTTAGCAAAGTTCTAAAGATAGCAGAACCAAGTGAAGAGATGAGTTTTGTTCTGTTATCCAACTTGTACTGCTCGACTGGGCGGTGGAAGGAAGGCGAAGATGTGAGGAGAGAAATGGTCGAGCGAGGCATGAAAAAAACTCCGGGATGTAGCTGGATCGAAGTAGGAAACCAGGTTTCTACTTTTGTAGTCGGTGACTCTTCACACCCGCGCTTGGAGGAGCTTTCTGAAACTCTAAACTGCCTTCAACATGAAATGAGAAACCCAGAGACGTTTGGACCTTGA

Protein Analysis

625

Amino Acids

69.1

Weight (kDa)

5.5

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 34 - 81 2.7e-09 PPR repeat family
PPR_2 PF13041 170 - 215 3.2e-13 PPR repeat family
PPR PF01535 171 - 198 6.9e-08 PPR repeat
PPR_2 PF13041 300 - 347 2e-12 PPR repeat family
PPR_1 PF12854 301 - 328 9.2e-06 PPR repeat
PPR PF01535 303 - 333 4.6e-09 PPR repeat
PPR_2 PF13041 402 - 449 3e-10 PPR repeat family
E_motif PF20431 525 - 585 5.4e-16 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012237)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 802
AccII CGCG 3 cut(s) 839, 1130, 1804
AciI CCGC 3 cut(s) 716, 1675, 1802
AclWI GGATC 2 cut(s) 1069, 1757
AcsI RAATTY 3 cut(s) 260, 730, 823
AfaI GTAC 2 cut(s) 681, 1661
AfiI CCNNNNNNNGG 2 cut(s) 1363, 1807
AflIII ACRYGT 4 cut(s) 339, 837, 1128, 1433
AjnI CCWGG 2 cut(s) 818, 1764
AloI GAACNNNNNNTCC 2 cut(s) 581, 613
Alw21I GWGCWC 3 cut(s) 236, 356, 428
Alw26I GTCTC 1 cut(s) 1856
AlwI GGATC 2 cut(s) 1069, 1757
AoxI GGCC 1 cut(s) 1354
ApeKI GCWGC 2 cut(s) 467, 762
ApoI RAATTY 3 cut(s) 260, 730, 823
ArsI GACNNNNNNTTYG 4 cut(s) 20, 52, 1166, 1198
AspLEI GCGC 2 cut(s) 371, 1806
AspS9I GGNCC 1 cut(s) 1871
AsuC2I CCSGG 1 cut(s) 1737
AsuHPI GGTGA 5 cut(s) 166, 965, 1199, 1504, 1799
AsuII TTCGAA 1 cut(s) 1383
AvaII GGWCC 1 cut(s) 1871
BaeGI GKGCMC 1 cut(s) 70
BaeI ACNNNNGTAYC 2 cut(s) 798, 831
BbsI GAAGAC 1 cut(s) 702
Bbv12I GWGCWC 3 cut(s) 236, 356, 428
BbvI GCAGC 2 cut(s) 454, 774
BccI CCATC 3 cut(s) 670, 699, 944
BcgI CGANNNNNNTGC 4 cut(s) 375, 409, 1363, 1397
BciT130I CCWGG 2 cut(s) 820, 1766
BciVI GTATCC 1 cut(s) 826
BcnI CCSGG 1 cut(s) 1737
BcoDI GTCTC 1 cut(s) 1856
BfaI CTAG 4 cut(s) 98, 248, 887, 1521
BfmI CTRYAG 1 cut(s) 162
BfuAI ACCTGC 1 cut(s) 802
BfuI GTATCC 1 cut(s) 826
BisI GCNGC 2 cut(s) 468, 763
BlpI GCTNAGC 1 cut(s) 198
BlsI GCNGC 2 cut(s) 469, 764
Bme1390I CCNGG 3 cut(s) 820, 1737, 1766
Bme18I GGWCC 1 cut(s) 1871
BmgT120I GGNCC 1 cut(s) 1871
BmrFI CCNGG 3 cut(s) 820, 1737, 1766
BmrI ACTGGG 2 cut(s) 172, 1680
BmsI GCATC 3 cut(s) 573, 763, 1301
BmuI ACTGGG 2 cut(s) 172, 1680
BpiI GAAGAC 1 cut(s) 702
BplI GAGNNNNNCTC 2 cut(s) 121, 153
BpmI CTGGAG 1 cut(s) 1014
Bpu10I CCTNAGC 1 cut(s) 93
Bpu1102I GCTNAGC 1 cut(s) 198
Bpu14I TTCGAA 1 cut(s) 1383
BpuEI CTTGAG 3 cut(s) 250, 809, 893
BpuMI CCSGG 1 cut(s) 1737
BsaBI GATNNNNATC 1 cut(s) 1005
BsaJI CCNNGG 3 cut(s) 1078, 1246, 1389
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 2 cut(s) 1363, 1807
Bse118I RCCGGY 1 cut(s) 316
Bse1I ACTGG 2 cut(s) 178, 1675
Bse8I GATNNNNATC 1 cut(s) 1005
BseBI CCWGG 2 cut(s) 820, 1766
BseDI CCNNGG 3 cut(s) 1078, 1246, 1389
BseGI GGATG 3 cut(s) 681, 710, 1745
BseJI GATNNNNATC 1 cut(s) 1005
BseLI CCNNNNNNNGG 2 cut(s) 1363, 1807
BseMII CTCAG 4 cut(s) 84, 543, 885, 956
BseNI ACTGG 2 cut(s) 178, 1675
BseRI GAGGAG 2 cut(s) 1714, 1826
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 2 cut(s) 454, 774
BsgI GTGCAG 2 cut(s) 453, 1044
Bsh1236I CGCG 3 cut(s) 839, 1130, 1804
BshFI GGCC 1 cut(s) 1356
BsiHKAI GWGCWC 3 cut(s) 236, 356, 428
BsiSI CCGG 3 cut(s) 317, 605, 1736
BslI CCNNNNNNNGG 2 cut(s) 1363, 1807
BsmAI GTCTC 1 cut(s) 1856
BsmBI CGTCTC 1 cut(s) 1856
BsmI GAATGC 3 cut(s) 93, 454, 640
BsnI GGCC 1 cut(s) 1356
Bsp119I TTCGAA 1 cut(s) 1383
Bsp1286I GDGCHC 4 cut(s) 70, 236, 356, 428
Bsp143I GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp19I CCATGG 2 cut(s) 1078, 1389
BspACI CCGC 3 cut(s) 716, 1675, 1802
BspANI GGCC 1 cut(s) 1356
BspCNI CTCAG 4 cut(s) 85, 542, 886, 957
BspFNI CGCG 3 cut(s) 839, 1130, 1804
BspMI ACCTGC 1 cut(s) 802
BspPI GGATC 2 cut(s) 1069, 1757
BspT104I TTCGAA 1 cut(s) 1383
BsrFI RCCGGY 1 cut(s) 316
BsrI ACTGG 2 cut(s) 178, 1675
BssAI RCCGGY 1 cut(s) 316
BssECI CCNNGG 3 cut(s) 1078, 1246, 1389
BssMI GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
BssT1I CCWWGG 2 cut(s) 1078, 1389
Bst2UI CCWGG 2 cut(s) 820, 1766
Bst4CI ACNGT 5 cut(s) 106, 459, 545, 1178, 1502
Bst6I CTCTTC 3 cut(s) 1450, 1623, 1798
BstAPI GCANNNNNTGC 2 cut(s) 1022, 1178
BstBI TTCGAA 1 cut(s) 1383
BstC8I GCNNGC 2 cut(s) 537, 960
BstDEI CTNAG 6 cut(s) 93, 198, 365, 529, 894, 965
BstDSI CCRYGG 3 cut(s) 1078, 1246, 1389
BstENI CCTNNNNNAGG 1 cut(s) 1361
BstF5I GGATG 3 cut(s) 681, 710, 1745
BstFNI CGCG 3 cut(s) 839, 1130, 1804
BstHHI GCGC 2 cut(s) 371, 1806
BstKTI GATC 6 cut(s) 528, 1009, 1077, 1261, 1426, 1752
BstMAI GTCTC 1 cut(s) 1856
BstMBI GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
BstMWI GCNNNNNNNGC 6 cut(s) 41, 644, 722, 1022, 1178, 1262
BstNI CCWGG 2 cut(s) 820, 1766
BstNSI RCATGY 5 cut(s) 343, 539, 686, 1041, 1437
BstSCI CCNGG 3 cut(s) 818, 1735, 1764
BstSFI CTRYAG 1 cut(s) 162
BstSLI GKGCMC 1 cut(s) 70
BstUI CGCG 3 cut(s) 839, 1130, 1804
BstV1I GCAGC 2 cut(s) 454, 774
BstV2I GAAGAC 1 cut(s) 702
BsuI GTATCC 1 cut(s) 826
BsuRI GGCC 1 cut(s) 1356
BtgI CCRYGG 3 cut(s) 1078, 1246, 1389
BtsCI GGATG 3 cut(s) 681, 710, 1745
BtsIMutI CAGTG 2 cut(s) 541, 962
BveI ACCTGC 1 cut(s) 802
Cac8I GCNNGC 2 cut(s) 537, 960
CfoI GCGC 2 cut(s) 371, 1806
Cfr10I RCCGGY 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 1871
CseI GACGC 4 cut(s) 24, 203, 817, 845
CsiI ACCWGGT 1 cut(s) 1764
Csp6I GTAC 2 cut(s) 680, 1660
CviQI GTAC 2 cut(s) 680, 1660
DdeI CTNAG 6 cut(s) 93, 198, 365, 529, 894, 965
DpnI GATC 6 cut(s) 527, 1008, 1076, 1260, 1425, 1751
DpnII GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
DraI TTTAAA 1 cut(s) 1269
Eam1104I CTCTTC 3 cut(s) 1450, 1623, 1798
EarI CTCTTC 3 cut(s) 1450, 1623, 1798
Eco130I CCWWGG 2 cut(s) 1078, 1389
Eco147I AGGCCT 1 cut(s) 1356
Eco47I GGWCC 1 cut(s) 1871
EcoNI CCTNNNNNAGG 1 cut(s) 1361
EcoRI GAATTC 1 cut(s) 823
EcoRII CCWGG 2 cut(s) 818, 1764
EcoT14I CCWWGG 2 cut(s) 1078, 1389
EcoT22I ATGCAT 1 cut(s) 1039
ErhI CCWWGG 2 cut(s) 1078, 1389
Esp3I CGTCTC 1 cut(s) 1856
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FauI CCCGC 1 cut(s) 1809
FauNDI CATATG 1 cut(s) 1018
Fnu4HI GCNGC 2 cut(s) 468, 763
FokI GGATG 3 cut(s) 688, 717, 1752
Fsp4HI GCNGC 2 cut(s) 468, 763
FspBI CTAG 4 cut(s) 98, 248, 887, 1521
GlaI GCGC 2 cut(s) 370, 1805
GluI GCNGC 2 cut(s) 468, 763
GsuI CTGGAG 1 cut(s) 1014
HaeIII GGCC 1 cut(s) 1356
HapII CCGG 3 cut(s) 317, 605, 1736
HgaI GACGC 4 cut(s) 24, 203, 817, 845
HhaI GCGC 2 cut(s) 371, 1806
Hin6I GCGC 2 cut(s) 369, 1804
HinP1I GCGC 2 cut(s) 369, 1804
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 2 cut(s) 551, 1263
HpaII CCGG 3 cut(s) 317, 605, 1736
HphI GGTGA 5 cut(s) 166, 965, 1199, 1504, 1799
Hpy166II GTNNAC 7 cut(s) 126, 149, 174, 219, 1246, 1463, 1505
Hpy188I TCNGA 7 cut(s) 193, 266, 358, 807, 1006, 1089, 1822
Hpy188III TCNNGA 5 cut(s) 155, 229, 386, 872, 993
Hpy8I GTNNAC 7 cut(s) 126, 149, 174, 219, 1246, 1463, 1505
Hpy99I CGWCG 2 cut(s) 86, 197
HpyAV CCTTC 4 cut(s) 1361, 1675, 1679, 1847
HpyCH4III ACNGT 5 cut(s) 106, 459, 545, 1178, 1502
HpyCH4IV ACGT 3 cut(s) 617, 660, 1865
HpyCH4V TGCA 8 cut(s) 470, 1016, 1025, 1037, 1148, 1235, 1344, 1374
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 644, 722, 1022, 1178, 1262
HpyF3I CTNAG 6 cut(s) 93, 198, 365, 529, 894, 965
HpySE526I ACGT 3 cut(s) 617, 660, 1865
HspAI GCGC 2 cut(s) 369, 1804
Kzo9I GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
LmnI GCTCC 1 cut(s) 1813
Lsp1109I GCAGC 2 cut(s) 454, 774
LweI GCATC 3 cut(s) 573, 763, 1301
MabI ACCWGGT 1 cut(s) 1764
MaeI CTAG 4 cut(s) 98, 248, 887, 1521
MaeII ACGT 3 cut(s) 617, 660, 1865
MaeIII GTNAC 7 cut(s) 415, 907, 1124, 1315, 1429, 1510, 1787
MalI GATC 6 cut(s) 527, 1008, 1076, 1260, 1425, 1751
MboI GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
MboII GAAGA 8 cut(s) 279, 702, 709, 1022, 1467, 1640, 1703, 1785
MhlI GDGCHC 4 cut(s) 70, 236, 356, 428
MluCI AATT 8 cut(s) 260, 325, 730, 755, 823, 849, 1138, 1580
MluI ACGCGT 2 cut(s) 837, 1128
MlyI GAGTC 4 cut(s) 253, 800, 1511, 1784
MmeI TCCRAC 2 cut(s) 216, 1677
MnlI CCTC 8 cut(s) 715, 868, 1162, 1357, 1451, 1692, 1712, 1804
Mph1103I ATGCAT 1 cut(s) 1039
MseI TTAA 9 cut(s) 258, 321, 566, 740, 1137, 1164, 1268, 1302, 1395
MspI CCGG 3 cut(s) 317, 605, 1736
MspR9I CCNGG 3 cut(s) 820, 1737, 1766
Mva1269I GAATGC 3 cut(s) 93, 454, 640
MvaI CCWGG 2 cut(s) 820, 1766
MvnI CGCG 3 cut(s) 839, 1130, 1804
MwoI GCNNNNNNNGC 6 cut(s) 41, 644, 722, 1022, 1178, 1262
NciI CCSGG 1 cut(s) 1737
NcoI CCATGG 2 cut(s) 1078, 1389
NdeI CATATG 1 cut(s) 1018
NdeII GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
NmuCI GTSAC 3 cut(s) 1315, 1510, 1787
NsiI ATGCAT 1 cut(s) 1039
NspI RCATGY 5 cut(s) 343, 539, 686, 1041, 1437
NspV TTCGAA 1 cut(s) 1383
PaeI GCATGC 1 cut(s) 539
PceI AGGCCT 1 cut(s) 1356
PciI ACATGT 2 cut(s) 339, 1433
PctI GAATGC 3 cut(s) 93, 454, 640
PfeI GAWTC 8 cut(s) 186, 274, 557, 650, 1001, 1090, 1385, 1407
PfoI TCCNGGA 2 cut(s) 818, 1735
PkrI GCNGC 2 cut(s) 469, 764
PleI GAGTC 4 cut(s) 252, 799, 1511, 1784
PpsI GAGTC 4 cut(s) 252, 799, 1511, 1784
PscI ACATGT 2 cut(s) 339, 1433
Psp6I CCWGG 2 cut(s) 818, 1764
PspGI CCWGG 2 cut(s) 818, 1764
PspPI GGNCC 1 cut(s) 1871
PsrI GAACNNNNNNTAC 2 cut(s) 1516, 1548
RsaI GTAC 2 cut(s) 681, 1661
RsaNI GTAC 2 cut(s) 680, 1660
SaqAI TTAA 9 cut(s) 258, 321, 566, 740, 1137, 1164, 1268, 1302, 1395
SatI GCNGC 2 cut(s) 468, 763
Sau3AI GATC 6 cut(s) 525, 1006, 1074, 1258, 1423, 1749
Sau96I GGNCC 1 cut(s) 1871
SchI GAGTC 4 cut(s) 253, 800, 1511, 1784
ScrFI CCNGG 3 cut(s) 820, 1737, 1766
SduI GDGCHC 4 cut(s) 70, 236, 356, 428
SexAI ACCWGGT 1 cut(s) 1764
SfaNI GCATC 3 cut(s) 573, 763, 1301
SfcI CTRYAG 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 1383
SinI GGWCC 1 cut(s) 1871
SmlI CTYRAG 3 cut(s) 229, 788, 872
SmoI CTYRAG 3 cut(s) 229, 788, 872
SphI GCATGC 1 cut(s) 539
Sse9I AATT 8 cut(s) 260, 325, 730, 755, 823, 849, 1138, 1580
SseBI AGGCCT 1 cut(s) 1356
SsiI CCGC 3 cut(s) 716, 1675, 1802
SspMI CTAG 4 cut(s) 98, 248, 887, 1521
StuI AGGCCT 1 cut(s) 1356
StyD4I CCNGG 3 cut(s) 818, 1735, 1764
StyI CCWWGG 2 cut(s) 1078, 1389
TaaI ACNGT 5 cut(s) 106, 459, 545, 1178, 1502
TaiI ACGT 3 cut(s) 620, 663, 1868
TaqI TCGA 7 cut(s) 81, 385, 978, 1383, 1667, 1713, 1752
TaqII GACCGA 1 cut(s) 282
TasI AATT 8 cut(s) 260, 325, 730, 755, 823, 849, 1138, 1580
TatI WGTACW 1 cut(s) 1659
TfiI GAWTC 8 cut(s) 186, 274, 557, 650, 1001, 1090, 1385, 1407
Tru1I TTAA 9 cut(s) 258, 321, 566, 740, 1137, 1164, 1268, 1302, 1395
Tru9I TTAA 9 cut(s) 258, 321, 566, 740, 1137, 1164, 1268, 1302, 1395
TscAI CASTG 2 cut(s) 548, 969
TseFI GTSAC 3 cut(s) 1315, 1510, 1787
TseI GCWGC 2 cut(s) 467, 762
Tsp45I GTSAC 3 cut(s) 1315, 1510, 1787
TspGWI ACGGA 2 cut(s) 99, 688
TspRI CASTG 2 cut(s) 548, 969
VpaK11BI GGWCC 1 cut(s) 1871
XagI CCTNNNNNAGG 1 cut(s) 1361
XapI RAATTY 3 cut(s) 260, 730, 823
XceI RCATGY 5 cut(s) 343, 539, 686, 1041, 1437
XspI CTAG 4 cut(s) 98, 248, 887, 1521
Zsp2I ATGCAT 1 cut(s) 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.