Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012237

Physical Location & Seq

Genomic Coordinates Forward (+)

25589473 .. 25591356

Gene Structure 1884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g29000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1884 bp

ATGATATGCACTCAAAATTTGTTTCATACAACGTCAAAGATAGTAGCCCTTGCAAGATCTGGCCGAATAACATGTGCTCGCAAAATTTTCAACGAAATGCCTTTCAGAGACTCTATTGCTTGGAATGCAATGCTTACTAGCTATACTCAACTGGATTTTCATAACGAATCTCTCTCGCTTTTCCAGTGCATGAGAATCTCTGACACTAGGCCAGATCACTTTACCCTCACTGCAACTTTAAGTGCGTGTGCTGGTGCATATGAGCTTCAGTGTGGAACCCAAATTCACACGCTAGTTACTGTTTTGGGTTACCGGTCTTACTTGCCGGTTAATAATGCGCTTATTGATATGTATGGGAAGTGTTCGAATCCCTTGAGTGCTAGGAAAGTTTTTGAAGAAATGAAACATAGGAATGAGGTGTCTTGGTGTTCGTTTTTATTTGCACAGACAAACTCTGCTCAGTTCGACGTTGCCCATGAAGTGTTTTCTATGATGCCAAAAAGGGTTGAGATAGCTTGGAATATTATGATTGCCGGTTATGCACGAAATGGAGAAGTGGAGTCTTGTTTGACTTTGTTGAAAGAGATGACAGAGAGTATGCGTCAGCCAGATCAATGGACTTTCAGTGCTCTCATGAATGCTTGTGCTGAAGCATTAGAATTTTGGTGTGGTTGCATGGTACATGCTCTTGTCATTAAAAGTGGTTGGAGCTCTGCTGCAGAGGTCAAGAACTCGGTTTTAAGTTTTTATGCTGAAGTAGGCTGCCATGAAAATGCAAGAAAGATTTTTGAATCCATTGGAACTCTAACACAAGTGTCCTGGAATGCCATGATTGATACCTACATGAAACTGGGGAATACTCACGAAGCACTTCTTGTATTTCAGCGGGCCCCTGAAAAGAATATTGTTTCCTGGACATCTATGATCGCTGGATTTGCAAAAAATGGACCTGGAGAAGAAGCTGGTAGCTTCTTTGTGGATATGGTGAGAAGTGGAGTGCAACCAGATGACTTCACATTTGGAGCTGTCCTTCATGCATGTTCAAGCTTGGCAGTACTTGGACATGGTAAGATGGTCCATGGTTGCATACTTCGATACGGCTTCCATGCTTATGTCTTTATTGGGAATGGCTTAGTTAACATGTATGCTAAATGTGGGGATTTAGAAGGGTCAGTCCGTATATTCCGTAATATTCCTGACAAGGATCTAGTATCTTGGAATGCTATGTTATTTGCATTTGGATTGCATGGGCAAGCTATCCAAGCTGTACAGGTTTTTGAAGAGATGGTGGAAAACGGAGTAAAACCGGATAATGTGACCTTCATTGGCCTGCTGATGAGTTGCAGCCATGCTGGGCTTATAGAGGAAAGTCATGTGCTTTTTGAAACAATGAGATCAGTTTATGGCCTTTCCCCCGAAATGGATCATGTGACATGCATGGTGGATATGCTTGGCAGAGGTGGTTACTTAGCGGAAGCAAAAGAACTGGTAGATAAGTACTCGGAAGTAGGTGGTGGTGAGACCAGCTCATGGGAAGCTCTGCTCGGGGCATGTTCTGCGCAGGGGGACATAGGATTTGGAAAAAGTTTGGGCGAAAGTCTGAAGATACTAGAGCCGCATAAAGAGGCGAGTTATGTGTCACTATCAAATTTGTATTGTGCGAGCGGGCAATGGAAGGAAGCAGAAATGGTTAGGAAGATGATGGTTGATCAAGGGGTGAAGAAAATGCCCGGTTGTAGTTGGATACAAGTGAGAAACAAGGTAAAGGCTTTTGTAGCCGGGAAGCATTCGTATTCGTGTATGAACGATGAGTTATGTAATGTATTAACTTTGATTGATTTTGAAATGAGGAATCCATGCTGCTGTGTAGGTGTTCAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

628

Amino Acids

69.55

Weight (kDa)

5.9

Isoelectric Point (pI)

33.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	171 - 216	2.1e-11	PPR repeat family
PPR	PF01535	172 - 198	5e-07	PPR repeat
PPR_2	PF13041	300 - 348	8.5e-12	PPR repeat family
PPR	PF01535	303 - 333	7.6e-07	PPR repeat
PPR_2	PF13041	402 - 448	1.8e-09	PPR repeat family
PPR	PF01535	404 - 434	5e-06	PPR repeat
E_motif	PF20431	532 - 583	1.3e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36980 AT2G36980 AT2G36980
fragaria_vesca	FvH4_1g23230 FvH4_1g23230
malus_domestica	MD15G1335400.v1.1
prunus_persica	Prupe.6G167400_v2.0.a1
pyrus_communis	pycom15g29000
rosa_chinensis	RchiOBHm_Chr2g0118001
rosa_laevigata	RLG00000018386
rosa_multiflora	Rmu_sc0000948.1_g000020
rosa_roxburghii	Rroxscaffold_2G00126070
rosa_rugosa	Rorug02G0215300
rosa_samantha	Rh2AG271900 Rh2BG284000 Rh2CG325400 Rh2DG280300 Rh2DG298100
rosa_wichuraiana	Rw2G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1560
AccB7I	CCANNNNNTGG	1 cut(s)	1530
AccBSI	CCGCTC	1 cut(s)	1665
AciI	CCGC	4 cut(s)	886, 1472, 1616, 1665
AclWI	GGATC	2 cut(s)	1212, 1431
AcoI	YGGCCR	1 cut(s)	61
AcsI	RAATTY	6 cut(s)	16, 84, 282, 659, 1648, 1878
AcuI	CTGAAG	4 cut(s)	251, 669, 774, 1622
AfaI	GTAC	4 cut(s)	681, 1056, 1269, 1499
AfiI	CCNNNNNNNGG	2 cut(s)	1420, 1530
AflIII	ACRYGT	2 cut(s)	71, 1140
AgeI	ACCGGT	1 cut(s)	312
AgsI	TTSAA	9 cut(s)	91, 395, 580, 791, 1044, 1280, 1385, 1844, 1877
AjnI	CCWGG	3 cut(s)	818, 911, 949
Alw21I	GWGCWC	3 cut(s)	79, 631, 713
Alw26I	GTCTC	2 cut(s)	102, 1514
AlwI	GGATC	2 cut(s)	1212, 1431
Ama87I	CYCGRG	1 cut(s)	1544
AoxI	GGCC	5 cut(s)	61, 209, 888, 1327, 1405
ApaI	GGGCCC	1 cut(s)	892
ApeKI	GCWGC	4 cut(s)	716, 762, 1344, 1860
ApoI	RAATTY	6 cut(s)	16, 84, 282, 659, 1648, 1878
ArsI	GACNNNNNNTTYG	4 cut(s)	1001, 1033, 1559, 1591
AsiGI	ACCGGT	1 cut(s)	312
Asp700I	GAANNNNTTC	1 cut(s)	870
AspLEI	GCGC	2 cut(s)	340, 1561
AspS9I	GGNCC	4 cut(s)	888, 889, 947, 1075
AsuC2I	CCSGG	2 cut(s)	1731, 1780
AsuHPI	GGTGA	3 cut(s)	997, 1529, 1729
AsuII	TTCGAA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	1544
AvaII	GGWCC	2 cut(s)	947, 1075
BaeGI	GKGCMC	1 cut(s)	892
BanII	GRGCYC	2 cut(s)	713, 892
Bbv12I	GWGCWC	3 cut(s)	79, 631, 713
BbvI	GCAGC	4 cut(s)	703, 749, 1356, 1847
BccI	CCATC	3 cut(s)	1066, 1279, 1696
BceAI	ACGGC	1 cut(s)	1114
BciT130I	CCWGG	3 cut(s)	820, 913, 951
BciVI	GTATCC	1 cut(s)	1737
BclI	TGATCA	1 cut(s)	1708
BcnI	CCSGG	2 cut(s)	1731, 1780
BcoDI	GTCTC	2 cut(s)	102, 1514
BfaI	CTAG	6 cut(s)	138, 207, 293, 381, 1208, 1610
BfmI	CTRYAG	1 cut(s)	717
BfuI	GTATCC	1 cut(s)	1737
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	5 cut(s)	717, 763, 1345, 1616, 1861
BlsI	GCNGC	5 cut(s)	718, 764, 1346, 1617, 1862
BmcAI	AGTACT	2 cut(s)	1056, 1499
Bme1390I	CCNGG	5 cut(s)	820, 913, 951, 1731, 1780
Bme18I	GGWCC	2 cut(s)	947, 1075
BmeT110I	CYCGRG	1 cut(s)	1544
BmgT120I	GGNCC	4 cut(s)	888, 889, 947, 1075
BmiI	GGNNCC	3 cut(s)	277, 890, 891
BmrFI	CCNGG	5 cut(s)	820, 913, 951, 1731, 1780
BmrI	ACTGGG	1 cut(s)	860
BmsI	GCATC	1 cut(s)	483
BmuI	ACTGGG	1 cut(s)	860
BplI	GAGNNNNNCTC	2 cut(s)	1511, 1543
BpmI	CTGGAG	1 cut(s)	972
Bpu14I	TTCGAA	1 cut(s)	365
BpuEI	CTTGAG	1 cut(s)	394
BpuMI	CCSGG	2 cut(s)	1731, 1780
BsaI	GGTCTC	1 cut(s)	1514
BsaJI	CCNNGG	1 cut(s)	1078
BsaWI	WCCGGW	2 cut(s)	312, 1306
Bsc4I	CCNNNNNNNGG	2 cut(s)	1420, 1530
Bse118I	RCCGGY	3 cut(s)	312, 325, 533
Bse1I	ACTGG	4 cut(s)	156, 184, 855, 1491
Bse3DI	GCAATG	2 cut(s)	135, 1676
BseBI	CCWGG	3 cut(s)	820, 913, 951
BseDI	CCNNGG	1 cut(s)	1078
BseLI	CCNNNNNNNGG	2 cut(s)	1420, 1530
BseMI	GCAATG	2 cut(s)	135, 1676
BseMII	CTCAG	1 cut(s)	473
BseNI	ACTGG	4 cut(s)	156, 184, 855, 1491
BseSI	GKGCMC	1 cut(s)	892
BseXI	GCAGC	4 cut(s)	703, 749, 1356, 1847
BseYI	CCCAGC	1 cut(s)	1352
BshFI	GGCC	5 cut(s)	63, 211, 890, 1329, 1407
BshTI	ACCGGT	1 cut(s)	312
BsiHKAI	GWGCWC	3 cut(s)	79, 631, 713
BsiHKCI	CYCGRG	1 cut(s)	1544
BsiSI	CCGG	6 cut(s)	313, 326, 534, 1307, 1731, 1779
BslFI	GGGAC	1 cut(s)	1580
BslI	CCNNNNNNNGG	2 cut(s)	1420, 1530
BsmAI	GTCTC	2 cut(s)	102, 1514
BsmFI	GGGAC	1 cut(s)	1580
BsmI	GAATGC	5 cut(s)	130, 643, 829, 1225, 1786
BsnI	GGCC	5 cut(s)	63, 211, 890, 1329, 1407
Bso31I	GGTCTC	1 cut(s)	1514
BsoBI	CYCGRG	1 cut(s)	1544
Bsp119I	TTCGAA	1 cut(s)	365
Bsp120I	GGGCCC	1 cut(s)	888
Bsp1286I	GDGCHC	4 cut(s)	79, 631, 713, 892
Bsp1407I	TGTACA	1 cut(s)	1267
Bsp143I	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
Bsp19I	CCATGG	1 cut(s)	1078
BspACI	CCGC	4 cut(s)	886, 1472, 1616, 1665
BspANI	GGCC	5 cut(s)	63, 211, 890, 1329, 1407
BspCNI	CTCAG	1 cut(s)	472
BspHI	TCATGA	1 cut(s)	633
BspLI	GGNNCC	3 cut(s)	277, 890, 891
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	2 cut(s)	1212, 1431
BspT104I	TTCGAA	1 cut(s)	365
BspTNI	GGTCTC	1 cut(s)	1514
BsrBI	CCGCTC	1 cut(s)	1665
BsrDI	GCAATG	2 cut(s)	135, 1676
BsrFI	RCCGGY	3 cut(s)	312, 325, 533
BsrGI	TGTACA	1 cut(s)	1267
BsrI	ACTGG	4 cut(s)	156, 184, 855, 1491
BssAI	RCCGGY	3 cut(s)	312, 325, 533
BssECI	CCNNGG	1 cut(s)	1078
BssMI	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
BssT1I	CCWWGG	1 cut(s)	1078
Bst2UI	CCWGG	3 cut(s)	820, 913, 951
Bst4CI	ACNGT	1 cut(s)	301
Bst6I	CTCTTC	1 cut(s)	1275
BstAPI	GCANNNNNTGC	1 cut(s)	1556
BstAUI	TGTACA	1 cut(s)	1267
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	6 cut(s)	79, 888, 1254, 1331, 1663, 1667
BstDEI	CTNAG	3 cut(s)	459, 1132, 1468
BstDSI	CCRYGG	1 cut(s)	1078
BstEII	GGTNACC	1 cut(s)	308
BstHHI	GCGC	2 cut(s)	340, 1561
BstKTI	GATC	8 cut(s)	59, 217, 613, 927, 1207, 1397, 1426, 1711
BstMAI	GTCTC	2 cut(s)	102, 1514
BstMBI	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 539, 935, 1262, 1556, 1775
BstNI	CCWGG	3 cut(s)	820, 913, 951
BstNSI	RCATGY	6 cut(s)	75, 686, 1041, 1144, 1437, 1554
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	5 cut(s)	818, 911, 949, 1729, 1778
BstSFI	CTRYAG	1 cut(s)	717
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	4 cut(s)	703, 749, 1356, 1847
BstX2I	RGATCY	2 cut(s)	56, 1204
BstXI	CCANNNNNNTGG	1 cut(s)	615
BstYI	RGATCY	2 cut(s)	56, 1204
BsuI	GTATCC	1 cut(s)	1737
BsuRI	GGCC	5 cut(s)	63, 211, 890, 1329, 1407
BtgI	CCRYGG	1 cut(s)	1078
BtsI	GCAGTG	1 cut(s)	228
BtsIMutI	CAGTG	4 cut(s)	191, 228, 275, 631
Cac8I	GCNNGC	6 cut(s)	79, 888, 1254, 1331, 1663, 1667
CciI	TCATGA	1 cut(s)	633
CfoI	GCGC	2 cut(s)	340, 1561
Cfr10I	RCCGGY	3 cut(s)	312, 325, 533
Cfr13I	GGNCC	4 cut(s)	888, 889, 947, 1075
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	4 cut(s)	680, 1055, 1268, 1498
CspAI	ACCGGT	1 cut(s)	312
CviQI	GTAC	4 cut(s)	680, 1055, 1268, 1498
DdeI	CTNAG	3 cut(s)	459, 1132, 1468
DpnI	GATC	8 cut(s)	58, 216, 612, 926, 1206, 1396, 1425, 1710
DpnII	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
EaeI	YGGCCR	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	1275
EarI	CTCTTC	1 cut(s)	1275
Ecl136II	GAGCTC	1 cut(s)	711
Eco130I	CCWWGG	1 cut(s)	1078
Eco24I	GRGCYC	2 cut(s)	713, 892
Eco31I	GGTCTC	1 cut(s)	1514
Eco47I	GGWCC	2 cut(s)	947, 1075
Eco53kI	GAGCTC	1 cut(s)	711
Eco57I	CTGAAG	4 cut(s)	251, 669, 774, 1622
Eco88I	CYCGRG	1 cut(s)	1544
Eco91I	GGTNACC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	711
EcoO109I	RGGNCCY	1 cut(s)	889
EcoO65I	GGTNACC	1 cut(s)	308
EcoRII	CCWGG	3 cut(s)	818, 911, 949
EcoT14I	CCWWGG	1 cut(s)	1078
EcoT22I	ATGCAT	2 cut(s)	1039, 1439
EcoT38I	GRGCYC	2 cut(s)	713, 892
ErhI	CCWWGG	1 cut(s)	1078
FalI	AAGNNNNNCTT	2 cut(s)	858, 890
FaqI	GGGAC	1 cut(s)	1580
FauI	CCCGC	2 cut(s)	879, 1658
FauNDI	CATATG	1 cut(s)	259
FbaI	TGATCA	1 cut(s)	1708
Fnu4HI	GCNGC	5 cut(s)	717, 763, 1345, 1616, 1861
FriOI	GRGCYC	2 cut(s)	713, 892
Fsp4HI	GCNGC	5 cut(s)	717, 763, 1345, 1616, 1861
FspBI	CTAG	6 cut(s)	138, 207, 293, 381, 1208, 1610
FspI	TGCGCA	1 cut(s)	1560
GlaI	GCGC	2 cut(s)	339, 1560
GluI	GCNGC	5 cut(s)	717, 763, 1345, 1616, 1861
GsaI	CCCAGC	1 cut(s)	1356
GsuI	CTGGAG	1 cut(s)	972
HaeIII	GGCC	5 cut(s)	63, 211, 890, 1329, 1407
HapII	CCGG	6 cut(s)	313, 326, 534, 1307, 1731, 1779
HgaI	GACGC	1 cut(s)	590
HhaI	GCGC	2 cut(s)	340, 1561
Hin6I	GCGC	2 cut(s)	338, 1559
HinP1I	GCGC	2 cut(s)	338, 1559
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	1 cut(s)	1045
HinfI	GANTC	7 cut(s)	110, 167, 195, 367, 560, 791, 1852
HpaI	GTTAAC	1 cut(s)	1138
HpaII	CCGG	6 cut(s)	313, 326, 534, 1307, 1731, 1779
HphI	GGTGA	3 cut(s)	997, 1529, 1729
Hpy166II	GTNNAC	1 cut(s)	1138
Hpy188I	TCNGA	4 cut(s)	107, 202, 1504, 1602
Hpy188III	TCNNGA	4 cut(s)	634, 727, 863, 1196
Hpy8I	GTNNAC	1 cut(s)	1138
Hpy99I	CGWCG	1 cut(s)	470
HpyAV	CCTTC	4 cut(s)	1040, 1160, 1330, 1669
HpyCH4III	ACNGT	1 cut(s)	301
HpyCH4IV	ACGT	2 cut(s)	32, 468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 539, 935, 1262, 1556, 1775
HpyF3I	CTNAG	3 cut(s)	459, 1132, 1468
HpySE526I	ACGT	2 cut(s)	32, 468
HspAI	GCGC	2 cut(s)	338, 1559
Ksp22I	TGATCA	1 cut(s)	1708
KspAI	GTTAAC	1 cut(s)	1138
Kzo9I	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
LmnI	GCTCC	2 cut(s)	708, 1022
Lsp1109I	GCAGC	4 cut(s)	703, 749, 1356, 1847
LweI	GCATC	1 cut(s)	483
MaeI	CTAG	6 cut(s)	138, 207, 293, 381, 1208, 1610
MaeII	ACGT	2 cut(s)	32, 468
MaeIII	GTNAC	6 cut(s)	295, 308, 1315, 1429, 1463, 1638
MalI	GATC	8 cut(s)	58, 216, 612, 926, 1206, 1396, 1425, 1710
MbiI	CCGCTC	1 cut(s)	1665
MboI	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
MboII	GAAGA	6 cut(s)	407, 968, 1292, 1615, 1708, 1732
MflI	RGATCY	2 cut(s)	56, 1204
MhlI	GDGCHC	4 cut(s)	79, 631, 713, 892
MluCI	AATT	6 cut(s)	16, 84, 282, 659, 1648, 1878
MlyI	GAGTC	2 cut(s)	104, 569
MmeI	TCCRAC	2 cut(s)	686, 1721
MnlI	CCTC	7 cut(s)	236, 409, 715, 1357, 1451, 1618, 1842
Mph1103I	ATGCAT	2 cut(s)	1039, 1439
MroXI	GAANNNNTTC	1 cut(s)	870
MseI	TTAA	6 cut(s)	239, 330, 696, 740, 1137, 1826
MslI	CAYNNNNRTG	3 cut(s)	411, 771, 1110
MspA1I	CMGCKG	1 cut(s)	886
MspI	CCGG	6 cut(s)	313, 326, 534, 1307, 1731, 1779
MspR9I	CCNGG	5 cut(s)	820, 913, 951, 1731, 1780
Mva1269I	GAATGC	5 cut(s)	130, 643, 829, 1225, 1786
MvaI	CCWGG	3 cut(s)	820, 913, 951
MwoI	GCNNNNNNNGC	6 cut(s)	125, 539, 935, 1262, 1556, 1775
NciI	CCSGG	2 cut(s)	1731, 1780
NcoI	CCATGG	1 cut(s)	1078
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
NlaIV	GGNNCC	3 cut(s)	277, 890, 891
NmuCI	GTSAC	3 cut(s)	1315, 1429, 1638
NsbI	TGCGCA	1 cut(s)	1560
NsiI	ATGCAT	2 cut(s)	1039, 1439
NspI	RCATGY	6 cut(s)	75, 686, 1041, 1144, 1437, 1554
NspV	TTCGAA	1 cut(s)	365
PagI	TCATGA	1 cut(s)	633
PciI	ACATGT	2 cut(s)	71, 1140
PctI	GAATGC	5 cut(s)	130, 643, 829, 1225, 1786
PdmI	GAANNNNTTC	1 cut(s)	870
PfeI	GAWTC	5 cut(s)	167, 195, 367, 791, 1852
PflMI	CCANNNNNTGG	1 cut(s)	1530
PfoI	TCCNGGA	2 cut(s)	818, 911
PinAI	ACCGGT	1 cut(s)	312
PkrI	GCNGC	5 cut(s)	718, 764, 1346, 1617, 1862
PleI	GAGTC	2 cut(s)	104, 568
PpsI	GAGTC	2 cut(s)	104, 568
PscI	ACATGT	2 cut(s)	71, 1140
Psp124BI	GAGCTC	1 cut(s)	713
Psp6I	CCWGG	3 cut(s)	818, 911, 949
PspEI	GGTNACC	1 cut(s)	308
PspFI	CCCAGC	1 cut(s)	1352
PspGI	CCWGG	3 cut(s)	818, 911, 949
PspN4I	GGNNCC	3 cut(s)	277, 890, 891
PspOMI	GGGCCC	1 cut(s)	888
PspPI	GGNCC	4 cut(s)	888, 889, 947, 1075
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	2 cut(s)	56, 1204
RsaI	GTAC	4 cut(s)	681, 1056, 1269, 1499
RsaNI	GTAC	4 cut(s)	680, 1055, 1268, 1498
RseI	CAYNNNNRTG	3 cut(s)	411, 771, 1110
SacI	GAGCTC	1 cut(s)	713
SaqAI	TTAA	6 cut(s)	239, 330, 696, 740, 1137, 1826
SatI	GCNGC	5 cut(s)	717, 763, 1345, 1616, 1861
Sau3AI	GATC	8 cut(s)	56, 214, 610, 924, 1204, 1394, 1423, 1708
Sau96I	GGNCC	4 cut(s)	888, 889, 947, 1075
ScaI	AGTACT	2 cut(s)	1056, 1499
SchI	GAGTC	2 cut(s)	104, 569
ScrFI	CCNGG	5 cut(s)	820, 913, 951, 1731, 1780
SduI	GDGCHC	4 cut(s)	79, 631, 713, 892
SfaNI	GCATC	1 cut(s)	483
SfcI	CTRYAG	1 cut(s)	717
SfuI	TTCGAA	1 cut(s)	365
SinI	GGWCC	2 cut(s)	947, 1075
SmiMI	CAYNNNNRTG	3 cut(s)	411, 771, 1110
SmlI	CTYRAG	1 cut(s)	373
SmoI	CTYRAG	1 cut(s)	373
Sse9I	AATT	6 cut(s)	16, 84, 282, 659, 1648, 1878
SsiI	CCGC	4 cut(s)	886, 1472, 1616, 1665
SspI	AATATT	3 cut(s)	523, 904, 1192
SspMI	CTAG	6 cut(s)	138, 207, 293, 381, 1208, 1610
SstI	GAGCTC	1 cut(s)	713
StyD4I	CCNGG	5 cut(s)	818, 911, 949, 1729, 1778
StyI	CCWWGG	1 cut(s)	1078
TaaI	ACNGT	1 cut(s)	301
TaiI	ACGT	2 cut(s)	35, 471
TaqI	TCGA	3 cut(s)	365, 465, 1093
TasI	AATT	6 cut(s)	16, 84, 282, 659, 1648, 1878
TatI	WGTACW	3 cut(s)	1054, 1267, 1497
TauI	GCSGC	1 cut(s)	1618
TfiI	GAWTC	5 cut(s)	167, 195, 367, 791, 1852
Tru1I	TTAA	6 cut(s)	239, 330, 696, 740, 1137, 1826
Tru9I	TTAA	6 cut(s)	239, 330, 696, 740, 1137, 1826
TscAI	CASTG	4 cut(s)	191, 235, 275, 631
TseFI	GTSAC	3 cut(s)	1315, 1429, 1638
TseI	GCWGC	4 cut(s)	716, 762, 1344, 1860
Tsp45I	GTSAC	3 cut(s)	1315, 1429, 1638
TspGWI	ACGGA	3 cut(s)	1166, 1175, 1311
TspRI	CASTG	4 cut(s)	191, 235, 275, 631
Van91I	CCANNNNNTGG	1 cut(s)	1530
VpaK11BI	GGWCC	2 cut(s)	947, 1075
XapI	RAATTY	6 cut(s)	16, 84, 282, 659, 1648, 1878
XceI	RCATGY	6 cut(s)	75, 686, 1041, 1144, 1437, 1554
XmnI	GAANNNNTTC	1 cut(s)	870
XspI	CTAG	6 cut(s)	138, 207, 293, 381, 1208, 1610
ZrmI	AGTACT	2 cut(s)	1056, 1499
Zsp2I	ATGCAT	2 cut(s)	1039, 1439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.