Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0012237

Physical Location & Seq

Genomic Coordinates Reverse (-)

61145333 .. 61149996

Gene Structure 4664 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00126070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1902 bp

ATGGGCATCTTCTACTACCATAGAATGACATGCGCTCAAACATTGATCAAAACGACGTCGAAGATAGCAGCCTTTGCAAGGTTGGGTCACATCAACCATGCCCGCCAACTGTTCGACGAAATGCCTCACAGAGACTCCATTGCTTGGAACTCAATGCTCACCGCCTACACCCAACTGGGCTTCCACCACCAAGCTCTCTCTCTTCTCCGCAGCATGAGAATCTCCAACACCCGGCCCGATCACTTCACCTTCACTGCTACACTAAGCGCCTGTGCCGGCGCATGTAACCTTCAATGTGGAACCAAATTACACTGTTTACTCACTGTTTTGGGTTACCAGTCTTACTTGCCGGTCAACAATGCGCTTATTGATATGTATGGCAAGTGTTTGGAGCCTTGCAGTGCTACTAGAGTGTTTGAAGAGATGAAACTTAGGAATGAAGTAACTTGGTGTTCTTTGTTATTTGCTTACACAAACTCCGGACTGTTTGACGCCGCGCGTCAAGTGTTTTGTGTAATGCCTAGAAGGGTGGAGAGAGCTTGGAATGTTATGATTGTGGGTTATGCACGAAACGGGGAAGTGGAGATGTGTTTGGGGTTGTTGAAAGAGATGAAAGAGAGTTTGTGCCGGCCAGATCAGTGGACTTTCAGTGCTCTTATGAATGCTTGCGCAGAGGCGTTGGAATTTCGGTGTGGTTGCGTGCTGCATGCTTTCATCATTAAAAGTGGTTGGAGCTCTTCTGCGGAGGTGAAGAACTCGGTTTTGAGTTTTTATGCTGAATTAGGTTGCCTGGGCAATGCGGTGAAGGTGTTTGAGTCCGGTGGAACTCTAACACAGGTGTCCTGGAATGCGATGATTGATACCTACATGAAACTGGGAAATACCCATGAAGCACTTCGTGTGTTTCAGCTATCCCCTGAACAGAATATTGTCTCATGGACATCTATGATCTCAGGGTATGCAAGAAATGGACGTGGGGAAGAAGCTGCAATGTTCTTTGTTGATATGTTGAGAACTGGACTCGAACCAGATGATTTCAGTTTTGCTGCCGTCCTTCATGCATGTTCAAACTTAGCATTACTTGGACGCGGGGAAATGTTTCATGGTTGCATAATTCACTATGGTTTCCATGCATATGCGTTTATTGGGAACGGCTTGGTTAACATGTATGCTAAATGCGGGGATTTGAAAGGGTCCATCCGTGCATTCCGTGATATATTGCACAAGGATCTGGTATCTTGGAATGCGATGTTGTTTGCATTTGGATTACATGGAAAAGCTATCGAAACTCTACAATTTTTTGAACAAATGGTGGTAAATGGTGTCAAACCAGATAATGTTACCTTTATCGGCTTGTTGATGGCTTGCAGCCACTCGGGATTGATAGGAGAAAGTCGTGCACTTTTTGAAACAATGCAGACAATTTATGGGCTCTCTCCTGACAAATATCATGTGGCATGCATGGTGGATATGCTTGGAAGAGGTGGCTACTTAGCTGAAGCTAAGGAACTGTCTGATAAGTATTGTTCAGTATATAGTGCTAAGATCAGCTCGCGTGAAGCTCTGCTTGGAGCATGTTCTGCACATGGGGAGTTGGGATTTGGAAAATATTTGGGGGAAATGCTGAAAATAACAGAACCACATAATGAGACGAGCTATGTGTTATTGTCAAATTTGTACTGTGCAAGTGGGCAATGGAAGGAAGCTGAAATGGTTAGGAAGAGAATGGCAGATCAAGGGGTGAAGAAAATGCCTGGATGTAGTTGGATAGAAGTGAGAAACAAGGTAATGGCTTTTGTTGCAGGGAAGAATTCTGATCCATTTATGGATGACGTGTATAATATACTACAGTACATTGATTTTGAAATCAGGAATCCATACTTTGTTGATATTAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

633

Amino Acids

70.84

Weight (kDa)

7.01

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	45 - 92	1.5e-08	PPR repeat family
PPR_2	PF13041	180 - 224	4.5e-12	PPR repeat family
PPR	PF01535	180 - 207	1.9e-07	PPR repeat
PPR_2	PF13041	309 - 356	6.1e-12	PPR repeat family
PPR	PF01535	311 - 340	9.4e-08	PPR repeat
PPR_2	PF13041	410 - 457	1.4e-07	PPR repeat family
E_motif	PF20431	532 - 591	6.3e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36980 AT2G36980 AT2G36980
fragaria_vesca	FvH4_1g23230 FvH4_1g23230
malus_domestica	MD15G1335400.v1.1
prunus_persica	Prupe.6G167400_v2.0.a1
pyrus_communis	pycom15g29000
rosa_chinensis	RchiOBHm_Chr2g0118001
rosa_laevigata	RLG00000018386
rosa_multiflora	Rmu_sc0000948.1_g000020
rosa_roxburghii	Rroxscaffold_2G00126070
rosa_rugosa	Rorug02G0215300
rosa_samantha	Rh2AG271900 Rh2BG284000 Rh2CG325400 Rh2DG280300 Rh2DG298100
rosa_wichuraiana	Rw2G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	59
Acc16I	TGCGCA	1 cut(s)	670
AccB7I	CCANNNNNTGG	1 cut(s)	144
AccII	CGCG	4 cut(s)	497, 499, 1089, 1555
AccIII	TCCGGA	1 cut(s)	479
AciI	CCGC	8 cut(s)	103, 162, 208, 495, 743, 800, 1089, 1179
AclWI	GGATC	2 cut(s)	1236, 1811
AcoI	YGGCCR	1 cut(s)	629
AcsI	RAATTY	3 cut(s)	683, 1672, 1810
AcuI	CTGAAG	1 cut(s)	1518
AcyI	GRCGYC	2 cut(s)	56, 492
AdeI	CACNNNGTG	1 cut(s)	899
AfaI	GTAC	2 cut(s)	1679, 1853
AfiI	CCNNNNNNNGG	3 cut(s)	78, 144, 231
AflIII	ACRYGT	2 cut(s)	1164, 1833
AgsI	TTSAA	8 cut(s)	293, 419, 604, 1068, 1189, 1304, 1409, 1865
AjiI	CACGTC	2 cut(s)	974, 1834
AjnI	CCWGG	3 cut(s)	789, 842, 1753
AjuI	GAANNNNNNNTTGG	2 cut(s)	1551, 1583
Alw21I	GWGCWC	3 cut(s)	655, 737, 1402
Alw26I	GTCTC	3 cut(s)	126, 937, 1643
Alw44I	GTGCAC	1 cut(s)	1398
AlwI	GGATC	2 cut(s)	1236, 1811
Ama87I	CYCGRG	1 cut(s)	1375
Aor13HI	TCCGGA	1 cut(s)	479
AoxI	GGCC	2 cut(s)	233, 629
ApaLI	GTGCAC	1 cut(s)	1398
ApeKI	GCWGC	6 cut(s)	68, 210, 703, 986, 1046, 1368
ApoI	RAATTY	3 cut(s)	683, 1672, 1810
AseI	ATTAAT	1 cut(s)	1893
Asp700I	GAANNNNTTC	2 cut(s)	894, 1098
AspLEI	GCGC	6 cut(s)	35, 269, 281, 364, 499, 671
AspS9I	GGNCC	2 cut(s)	234, 1194
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	5 cut(s)	151, 238, 760, 814, 1753
AvaI	CYCGRG	1 cut(s)	1375
AvaII	GGWCC	1 cut(s)	1194
BaeGI	GKGCMC	1 cut(s)	1402
BanII	GRGCYC	2 cut(s)	737, 1434
Bbv12I	GWGCWC	3 cut(s)	655, 737, 1402
BbvI	GCAGC	6 cut(s)	80, 222, 690, 973, 1033, 1380
BccI	CCATC	2 cut(s)	1205, 1354
BceAI	ACGGC	2 cut(s)	1034, 1168
BciT130I	CCWGG	3 cut(s)	791, 844, 1755
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	126, 937, 1643
BfaI	CTAG	2 cut(s)	408, 522
BfmI	CTRYAG	1 cut(s)	1847
BfoI	RGCGCY	1 cut(s)	270
BisI	GCNGC	7 cut(s)	69, 211, 495, 704, 987, 1047, 1369
BlsI	GCNGC	7 cut(s)	70, 212, 496, 705, 988, 1048, 1370
Bme1390I	CCNGG	4 cut(s)	232, 791, 844, 1755
Bme18I	GGWCC	1 cut(s)	1194
BmeT110I	CYCGRG	1 cut(s)	1375
BmgBI	CACGTC	2 cut(s)	974, 1834
BmgT120I	GGNCC	2 cut(s)	234, 1194
BmiI	GGNNCC	3 cut(s)	301, 393, 1195
BmrFI	CCNGG	4 cut(s)	232, 791, 844, 1755
BmrI	ACTGGG	2 cut(s)	185, 884
BmsI	GCATC	1 cut(s)	15
BmuI	ACTGGG	2 cut(s)	185, 884
Bpu10I	CCTNAGC	1 cut(s)	1503
BpuMI	CCSGG	1 cut(s)	232
BsaHI	GRCGYC	2 cut(s)	56, 492
BsaJI	CCNNGG	1 cut(s)	790
BsaWI	WCCGGW	2 cut(s)	479, 818
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 461, 491
Bsc4I	CCNNNNNNNGG	3 cut(s)	78, 144, 231
Bse118I	RCCGGY	3 cut(s)	275, 349, 627
Bse1I	ACTGG	4 cut(s)	180, 337, 879, 1021
Bse3DI	GCAATG	4 cut(s)	138, 802, 996, 1700
BseAI	TCCGGA	1 cut(s)	479
BseBI	CCWGG	3 cut(s)	791, 844, 1755
BseDI	CCNNGG	1 cut(s)	790
BseGI	GGATG	3 cut(s)	1197, 1763, 1834
BseLI	CCNNNNNNNGG	3 cut(s)	78, 144, 231
BseMI	GCAATG	4 cut(s)	138, 802, 996, 1700
BseMII	CTCAG	1 cut(s)	966
BseNI	ACTGG	4 cut(s)	180, 337, 879, 1021
BseSI	GKGCMC	1 cut(s)	1402
BseXI	GCAGC	6 cut(s)	80, 222, 690, 973, 1033, 1380
BsgI	GTGCAG	1 cut(s)	1566
Bsh1236I	CGCG	4 cut(s)	497, 499, 1089, 1555
BshFI	GGCC	2 cut(s)	235, 631
BsiHKAI	GWGCWC	3 cut(s)	655, 737, 1402
BsiHKCI	CYCGRG	1 cut(s)	1375
BsiSI	CCGG	6 cut(s)	232, 276, 350, 480, 628, 819
BslI	CCNNNNNNNGG	3 cut(s)	78, 144, 231
BsmAI	GTCTC	3 cut(s)	126, 937, 1643
BsmBI	CGTCTC	1 cut(s)	1643
BsmI	GAATGC	4 cut(s)	667, 853, 1205, 1249
BsnI	GGCC	2 cut(s)	235, 631
BsoBI	CYCGRG	1 cut(s)	1375
Bsp1286I	GDGCHC	4 cut(s)	655, 737, 1402, 1434
Bsp13I	TCCGGA	1 cut(s)	479
Bsp143I	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
BspACI	CCGC	8 cut(s)	103, 162, 208, 495, 743, 800, 1089, 1179
BspANI	GGCC	2 cut(s)	235, 631
BspCNI	CTCAG	1 cut(s)	965
BspEI	TCCGGA	1 cut(s)	479
BspFNI	CGCG	4 cut(s)	497, 499, 1089, 1555
BspLI	GGNNCC	3 cut(s)	301, 393, 1195
BspPI	GGATC	2 cut(s)	1236, 1811
BspQI	GCTCTTC	1 cut(s)	742
BsrDI	GCAATG	4 cut(s)	138, 802, 996, 1700
BsrFI	RCCGGY	3 cut(s)	275, 349, 627
BsrI	ACTGG	4 cut(s)	180, 337, 879, 1021
BssAI	RCCGGY	3 cut(s)	275, 349, 627
BssECI	CCNNGG	1 cut(s)	790
BssMI	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
BssNI	GRCGYC	2 cut(s)	56, 492
Bst2UI	CCWGG	3 cut(s)	791, 844, 1755
Bst4CI	ACNGT	7 cut(s)	111, 314, 325, 486, 1512, 1682, 1851
Bst6I	CTCTTC	5 cut(s)	207, 414, 742, 1474, 1715
BstACI	GRCGYC	2 cut(s)	56, 492
BstAPI	GCANNNNNTGC	2 cut(s)	74, 1580
BstC8I	GCNNGC	9 cut(s)	103, 277, 629, 667, 701, 708, 1366, 1459, 1553
BstDEI	CTNAG	7 cut(s)	263, 431, 952, 1072, 1492, 1503, 1542
BstEII	GGTNACC	1 cut(s)	332
BstENI	CCTNNNNNAGG	1 cut(s)	76
BstF5I	GGATG	3 cut(s)	1197, 1763, 1834
BstFNI	CGCG	4 cut(s)	497, 499, 1089, 1555
BstH2I	RGCGCY	1 cut(s)	270
BstHHI	GCGC	6 cut(s)	35, 269, 281, 364, 499, 671
BstKTI	GATC	8 cut(s)	48, 241, 637, 951, 1231, 1548, 1735, 1819
BstMAI	GTCTC	3 cut(s)	126, 937, 1643
BstMBI	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 1580, 1799
BstNI	CCWGG	3 cut(s)	791, 844, 1755
BstNSI	RCATGY	7 cut(s)	33, 285, 710, 1065, 1168, 1461, 1578
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	230, 789, 842, 1753
BstSFI	CTRYAG	1 cut(s)	1847
BstSLI	GKGCMC	1 cut(s)	1402
BstUI	CGCG	4 cut(s)	497, 499, 1089, 1555
BstV1I	GCAGC	6 cut(s)	80, 222, 690, 973, 1033, 1380
BstX2I	RGATCY	1 cut(s)	1228
BstXI	CCANNNNNNTGG	1 cut(s)	639
BstYI	RGATCY	1 cut(s)	1228
BsuRI	GGCC	2 cut(s)	235, 631
BtgZI	GCGATG	2 cut(s)	866, 1262
BtrI	CACGTC	2 cut(s)	974, 1834
BtsCI	GGATG	3 cut(s)	1197, 1763, 1834
BtsI	GCAGTG	2 cut(s)	252, 406
BtsIMutI	CAGTG	6 cut(s)	252, 310, 321, 406, 644, 655
Cac8I	GCNNGC	9 cut(s)	103, 277, 629, 667, 701, 708, 1366, 1459, 1553
CfoI	GCGC	6 cut(s)	35, 269, 281, 364, 499, 671
Cfr10I	RCCGGY	3 cut(s)	275, 349, 627
Cfr13I	GGNCC	2 cut(s)	234, 1194
CseI	GACGC	3 cut(s)	488, 500, 1095
Csp6I	GTAC	2 cut(s)	1678, 1852
CviQI	GTAC	2 cut(s)	1678, 1852
DdeI	CTNAG	7 cut(s)	263, 431, 952, 1072, 1492, 1503, 1542
DpnI	GATC	8 cut(s)	47, 240, 636, 950, 1230, 1547, 1734, 1818
DpnII	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
DraIII	CACNNNGTG	1 cut(s)	899
EaeI	YGGCCR	1 cut(s)	629
Eam1104I	CTCTTC	5 cut(s)	207, 414, 742, 1474, 1715
EarI	CTCTTC	5 cut(s)	207, 414, 742, 1474, 1715
Ecl136II	GAGCTC	1 cut(s)	735
Eco24I	GRGCYC	2 cut(s)	737, 1434
Eco47I	GGWCC	1 cut(s)	1194
Eco53kI	GAGCTC	1 cut(s)	735
Eco57I	CTGAAG	1 cut(s)	1518
Eco88I	CYCGRG	1 cut(s)	1375
Eco91I	GGTNACC	1 cut(s)	332
EcoICRI	GAGCTC	1 cut(s)	735
EcoNI	CCTNNNNNAGG	1 cut(s)	76
EcoO65I	GGTNACC	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	1810
EcoRII	CCWGG	3 cut(s)	789, 842, 1753
EcoT22I	ATGCAT	3 cut(s)	1063, 1135, 1463
EcoT38I	GRGCYC	2 cut(s)	737, 1434
Esp3I	CGTCTC	1 cut(s)	1643
FalI	AAGNNNNNCTT	2 cut(s)	1551, 1583
FauI	CCCGC	3 cut(s)	110, 1082, 1172
FauNDI	CATATG	1 cut(s)	1135
FbaI	TGATCA	1 cut(s)	45
Fnu4HI	GCNGC	7 cut(s)	69, 211, 495, 704, 987, 1047, 1369
FokI	GGATG	3 cut(s)	1184, 1770, 1841
FriOI	GRGCYC	2 cut(s)	737, 1434
Fsp4HI	GCNGC	7 cut(s)	69, 211, 495, 704, 987, 1047, 1369
FspBI	CTAG	2 cut(s)	408, 522
FspI	TGCGCA	1 cut(s)	670
GlaI	GCGC	6 cut(s)	34, 268, 280, 363, 498, 670
GluI	GCNGC	7 cut(s)	69, 211, 495, 704, 987, 1047, 1369
HaeII	RGCGCY	1 cut(s)	270
HaeIII	GGCC	2 cut(s)	235, 631
HapII	CCGG	6 cut(s)	232, 276, 350, 480, 628, 819
HgaI	GACGC	3 cut(s)	488, 500, 1095
HhaI	GCGC	6 cut(s)	35, 269, 281, 364, 499, 671
Hin1I	GRCGYC	2 cut(s)	56, 492
Hin6I	GCGC	6 cut(s)	33, 267, 279, 362, 497, 669
HinP1I	GCGC	6 cut(s)	33, 267, 279, 362, 497, 669
HincII	GTYRAC	2 cut(s)	355, 1162
HindII	GTYRAC	2 cut(s)	355, 1162
HinfI	GANTC	5 cut(s)	134, 219, 815, 1020, 1873
HpaI	GTTAAC	1 cut(s)	1162
HpaII	CCGG	6 cut(s)	232, 276, 350, 480, 628, 819
HphI	GGTGA	5 cut(s)	151, 238, 760, 814, 1753
Hpy166II	GTNNAC	5 cut(s)	317, 355, 642, 1162, 1400
Hpy188I	TCNGA	2 cut(s)	1516, 1816
Hpy188III	TCNNGA	4 cut(s)	480, 1377, 1439, 1870
Hpy8I	GTNNAC	5 cut(s)	317, 355, 642, 1162, 1400
Hpy99I	CGWCG	3 cut(s)	58, 61, 119
HpyAV	CCTTC	6 cut(s)	259, 299, 519, 799, 1064, 1693
HpyCH4III	ACNGT	7 cut(s)	111, 314, 325, 486, 1512, 1682, 1851
HpyCH4IV	ACGT	3 cut(s)	56, 973, 1833
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 1580, 1799
HpyF3I	CTNAG	7 cut(s)	263, 431, 952, 1072, 1492, 1503, 1542
HpySE526I	ACGT	3 cut(s)	56, 973, 1833
Hsp92I	GRCGYC	2 cut(s)	56, 492
HspAI	GCGC	6 cut(s)	33, 267, 279, 362, 497, 669
Kpn2I	TCCGGA	1 cut(s)	479
KroI	GCCGGC	2 cut(s)	275, 627
KroNI	GCCGGC	2 cut(s)	277, 629
Ksp22I	TGATCA	1 cut(s)	45
KspAI	GTTAAC	1 cut(s)	1162
Kzo9I	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
LguI	GCTCTTC	1 cut(s)	742
LmnI	GCTCC	3 cut(s)	391, 732, 1571
Lsp1109I	GCAGC	6 cut(s)	80, 222, 690, 973, 1033, 1380
LweI	GCATC	1 cut(s)	15
MaeI	CTAG	2 cut(s)	408, 522
MaeII	ACGT	3 cut(s)	56, 973, 1833
MaeIII	GTNAC	5 cut(s)	86, 284, 332, 442, 1339
MalI	GATC	8 cut(s)	47, 240, 636, 950, 1230, 1547, 1734, 1818
MboI	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
MflI	RGATCY	1 cut(s)	1228
MhlI	GDGCHC	4 cut(s)	655, 737, 1402, 1434
MluCI	AATT	9 cut(s)	305, 683, 779, 1113, 1295, 1422, 1672, 1810, 1894
MlyI	GAGTC	3 cut(s)	128, 824, 1014
MmeI	TCCRAC	4 cut(s)	249, 660, 710, 1745
MnlI	CCTC	4 cut(s)	135, 667, 739, 1475
Mph1103I	ATGCAT	3 cut(s)	1063, 1135, 1463
MroI	TCCGGA	1 cut(s)	479
MroNI	GCCGGC	2 cut(s)	275, 627
MroXI	GAANNNNTTC	2 cut(s)	894, 1098
MseI	TTAA	3 cut(s)	720, 1161, 1893
MslI	CAYNNNNRTG	1 cut(s)	1134
MspI	CCGG	6 cut(s)	232, 276, 350, 480, 628, 819
MspR9I	CCNGG	4 cut(s)	232, 791, 844, 1755
Mva1269I	GAATGC	4 cut(s)	667, 853, 1205, 1249
MvaI	CCWGG	3 cut(s)	791, 844, 1755
MvnI	CGCG	4 cut(s)	497, 499, 1089, 1555
MwoI	GCNNNNNNNGC	3 cut(s)	74, 1580, 1799
NaeI	GCCGGC	2 cut(s)	277, 629
NciI	CCSGG	1 cut(s)	232
NdeI	CATATG	1 cut(s)	1135
NdeII	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
NgoMIV	GCCGGC	2 cut(s)	275, 627
NlaIV	GGNNCC	3 cut(s)	301, 393, 1195
NmuCI	GTSAC	1 cut(s)	86
NsbI	TGCGCA	1 cut(s)	670
NsiI	ATGCAT	3 cut(s)	1063, 1135, 1463
NspI	RCATGY	7 cut(s)	33, 285, 710, 1065, 1168, 1461, 1578
PaeI	GCATGC	2 cut(s)	710, 1461
PciI	ACATGT	1 cut(s)	1164
PciSI	GCTCTTC	1 cut(s)	742
PctI	GAATGC	4 cut(s)	667, 853, 1205, 1249
PdiI	GCCGGC	2 cut(s)	277, 629
PdmI	GAANNNNTTC	2 cut(s)	894, 1098
PfeI	GAWTC	2 cut(s)	219, 1873
PflMI	CCANNNNNTGG	1 cut(s)	144
PfoI	TCCNGGA	1 cut(s)	842
PkrI	GCNGC	7 cut(s)	70, 212, 496, 705, 988, 1048, 1370
PleI	GAGTC	3 cut(s)	128, 823, 1014
PpsI	GAGTC	3 cut(s)	128, 823, 1014
PscI	ACATGT	1 cut(s)	1164
PshBI	ATTAAT	1 cut(s)	1893
Psp124BI	GAGCTC	1 cut(s)	737
Psp6I	CCWGG	3 cut(s)	789, 842, 1753
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	3 cut(s)	789, 842, 1753
PspN4I	GGNNCC	3 cut(s)	301, 393, 1195
PspPI	GGNCC	2 cut(s)	234, 1194
PsuI	RGATCY	1 cut(s)	1228
RsaI	GTAC	2 cut(s)	1679, 1853
RsaNI	GTAC	2 cut(s)	1678, 1852
RseI	CAYNNNNRTG	1 cut(s)	1134
SacI	GAGCTC	1 cut(s)	737
SapI	GCTCTTC	1 cut(s)	742
SaqAI	TTAA	3 cut(s)	720, 1161, 1893
SatI	GCNGC	7 cut(s)	69, 211, 495, 704, 987, 1047, 1369
Sau3AI	GATC	8 cut(s)	45, 238, 634, 948, 1228, 1545, 1732, 1816
Sau96I	GGNCC	2 cut(s)	234, 1194
SchI	GAGTC	3 cut(s)	128, 824, 1014
ScrFI	CCNGG	4 cut(s)	232, 791, 844, 1755
SduI	GDGCHC	4 cut(s)	655, 737, 1402, 1434
SfaNI	GCATC	1 cut(s)	15
SfcI	CTRYAG	1 cut(s)	1847
SinI	GGWCC	1 cut(s)	1194
SmiMI	CAYNNNNRTG	1 cut(s)	1134
SphI	GCATGC	2 cut(s)	710, 1461
Sse9I	AATT	9 cut(s)	305, 683, 779, 1113, 1295, 1422, 1672, 1810, 1894
SsiI	CCGC	8 cut(s)	103, 162, 208, 495, 743, 800, 1089, 1179
SspI	AATATT	2 cut(s)	928, 1610
SspMI	CTAG	2 cut(s)	408, 522
SstI	GAGCTC	1 cut(s)	737
StyD4I	CCNGG	4 cut(s)	230, 789, 842, 1753
TaaI	ACNGT	7 cut(s)	111, 314, 325, 486, 1512, 1682, 1851
TaiI	ACGT	3 cut(s)	59, 976, 1836
TaqI	TCGA	4 cut(s)	59, 114, 1023, 1284
TasI	AATT	9 cut(s)	305, 683, 779, 1113, 1295, 1422, 1672, 1810, 1894
TatI	WGTACW	2 cut(s)	1677, 1851
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	219, 1873
Tru1I	TTAA	3 cut(s)	720, 1161, 1893
Tru9I	TTAA	3 cut(s)	720, 1161, 1893
TscAI	CASTG	6 cut(s)	259, 317, 328, 406, 644, 655
TseFI	GTSAC	1 cut(s)	86
TseI	GCWGC	6 cut(s)	68, 210, 703, 986, 1046, 1368
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	9 cut(s)	440, 453, 626, 674, 703, 884, 903, 1046, 1091
TspGWI	ACGGA	2 cut(s)	1190, 1199
TspRI	CASTG	6 cut(s)	259, 317, 328, 406, 644, 655
Van91I	CCANNNNNTGG	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	1398
VpaK11BI	GGWCC	1 cut(s)	1194
VspI	ATTAAT	1 cut(s)	1893
XagI	CCTNNNNNAGG	1 cut(s)	76
XapI	RAATTY	3 cut(s)	683, 1672, 1810
XceI	RCATGY	7 cut(s)	33, 285, 710, 1065, 1168, 1461, 1578
XmnI	GAANNNNTTC	2 cut(s)	894, 1098
XspI	CTAG	2 cut(s)	408, 522
ZraI	GACGTC	1 cut(s)	57
Zsp2I	ATGCAT	3 cut(s)	1063, 1135, 1463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.