Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0012237

Physical Location & Seq

Genomic Coordinates Reverse (-)

20592243 .. 20594816

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0215300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGGGTATGGCCTTTGGTTTCCCCAAGCATTTCAATTTGCTTGCAACCTTGGAAATTATAACACCAACCCACCTCAAGTCCTTGACATCTCTTGCCCATAACACAAGCCACACAGAGGCCTCAAACTTTTACTCTTCTCTGATTCAACAATGCACACAGACAAAGTCCCTAAGAGGCTTGGGAATAGTTCAGACCCATATGATCAAATCCGGGTACATACAACTCACTATAGCCAATAAGCTCATTGATGGGTGTTTGAAATGTGGTAGCTTACATAATGCACGTAAGGTGTTCGACGAATTGCCTGAGAGACATGTAGTCATCTGGAATGCCATGATTTCTTCATACATTGGCCACAAGAAGAGTAAGGAGGCTATTGGGTTGTATGGGAAGATGGTCTTTGATGGAGTTTTGCCGGATGAGTACACGTTTTCGAGTGTTTTCAAGGCTTTTTCGGGTCTGGGTCTTGTATATGAAGCGCGGAGGGCTCATGGGTTGTCAGTGGTTTTGGGTCTGGAGGTGGCAAATGTGTTTGTTGGTAGTGCTCTTGTTGATATGTATGCAAAGTTTGGTAGAATGGGGGATGCAAGGTTGGTGTCGAATCGTGTTGGGGAGAAAGATGTTGTTTTGTTTACGGCGCTGATTGTTGGTTACTCTCAGCATGGTGATGATGGTGAAGCTCTTGAGGTTTTTGGGGACATGATCAACCAAGGAGTTAAGGCTAATGAGTATACTTTTGCTAGCATCTTGATCACTTGTGGGAACTTGGAGGATTTAACTCATGGTAAGTTGGTCCATGGTCTTGTTGTCAAATCTGGTTGTGAAGCTGCTGTGGCGTCACAGACTTCACTTCTAACAATGTATGCTAGGTGTGGATTGATTGATGATTCTCTGAGGATTTTTAAAAGGTTTCAGCATCCAAACCTGGTAACTTGGACGTCTCTTATCGTGGCTCTTGTTCGAAATGGTAGAGAAGAGTTGGCTTTGACAAAGTTTAGAAAGATGATTCGTGATTCAGTAGTTCCGAATTCTTTTACTTTATCTAGTGTTCTTCAGGCATGCTCAAGCCTTGCTATGATGGATGAAGGACAGCAAATTCATGCCACGGTCACAAAATTTGGATTGGATAGACACATATATGCTGGTGCTGCTCTCATTAACTTGTATGGGAAATGCGGAAATACAGAGATGGCAAGGTCAGTTCTTGATGCCTTGATTGAAATTGATTTGGTCTCCATGAATTCCATGATATATAGCTATGCGCAGAATGGATTTGGACATGAAGCACTTCAGCTTTTTGATGGGATGAAAGACTTAAGACTTGAACCAAACGATGTAACAATTTTGAGTGTTCTCTTGGCATGCAATAATTCAGGATTGGTGCAACAAGGCTGCCAAATTTTTTCTACCATTAGGAGTAATCACAATATTGAGTTGACAAGGGATCACTATGCTTGTATGGTTGATTTGCTGGGGCGTGCTGGAAGACTTGAAGATGCCGAAATGTTGATAAAAGAAGTCAAAAATCCAGATTTAGTATTATGGAGGGCACTGCTAAGTGCATGTAAACTTCATGGACAGGTTGAGATGGCAGAAAGAGCTCTAAAGAAAGTGCTTGAACTTGCTCCAGGAGACGGAGGATCTCATGTCCTGTTGACAAATCTTTATGCTTCAACTGGTAATTGGAGTCAAGTTATTGATATGAAAAGTACAATGAGGGAGATGAAATTCCAGAAGAACCCGGCAATGAGTTGGGTTGATGTGGACAGGGAGGTTCACACTTTCATGGCTGGAGATTTGTCCCATCCAAGATCTAGAGAGATAAATGAAACCTTAGAGAAATTGTTTGAGGAGGTGCAAATATTGGGTTATGTTCCTGATACAAGATTTGTGTTACAGGATTTGGATGAGGAGAAGAAGAAGAGGTCTTTGTACTATCACAGTGAAAAGCTAGCCATTGCCTTTGCTCTATTAGTGAGTAGTAAAAAGAATACCATCATCAGGATATTCAAGAACCTTAAAGTTTGTGGGGACTGTCATTCCTGGATAAAATTTGTCACCAGAGTTATTGGGAGAGAAATAATTGCTCGGGACGCCAAAAGATTTCATCATTTTAAGGACGGGTGTTGTTCCTGTGGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

716

Amino Acids

79.78

Weight (kDa)

7.83

Isoelectric Point (pI)

33.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	105 - 151	6.6e-12	PPR repeat family
PPR_2	PF13041	206 - 251	1.7e-08	PPR repeat family
PPR_3	PF13812	206 - 255	8.9e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	307 - 355	3.5e-08	PPR repeat family
PPR_2	PF13041	409 - 454	3.1e-07	PPR repeat family
PPR	PF01535	411 - 439	5.4e-06	PPR repeat
E_motif	PF20431	525 - 587	4.2e-14	E motif
Eplus_motif	PF20430	592 - 617	5.3e-08	E+ motif
DYW_deaminase	PF14432	623 - 716	7.9e-39	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36980 AT2G36980 AT2G36980
fragaria_vesca	FvH4_1g23230 FvH4_1g23230
malus_domestica	MD15G1335400.v1.1
prunus_persica	Prupe.6G167400_v2.0.a1
pyrus_communis	pycom15g29000
rosa_chinensis	RchiOBHm_Chr2g0118001
rosa_laevigata	RLG00000018386
rosa_multiflora	Rmu_sc0000948.1_g000020
rosa_roxburghii	Rroxscaffold_2G00126070
rosa_rugosa	Rorug02G0215300
rosa_samantha	Rh2AG271900 Rh2BG284000 Rh2CG325400 Rh2DG280300 Rh2DG298100
rosa_wichuraiana	Rw2G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	59
AatII	GACGTC	1 cut(s)	941
Acc16I	TGCGCA	1 cut(s)	1263
AccI	GTMKAC	1 cut(s)	731
AccII	CGCG	1 cut(s)	481
AciI	CCGC	2 cut(s)	481, 1176
AclWI	GGATC	2 cut(s)	1452, 1648
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	7 cut(s)	1027, 1095, 1115, 1240, 1398, 1727, 2051
AcuI	CTGAAG	2 cut(s)	1037, 1274
AcyI	GRCGYC	3 cut(s)	836, 938, 2094
AfaI	GTAC	4 cut(s)	215, 425, 1711, 1934
AfiI	CCNNNNNNNGG	3 cut(s)	115, 1634, 2001
AflII	CTTAAG	1 cut(s)	1315
AflIII	ACRYGT	2 cut(s)	313, 426
AhdI	GACNNNNNGTC	1 cut(s)	317
AjnI	CCWGG	3 cut(s)	924, 1627, 2042
AluBI	AGCT	8 cut(s)	241, 270, 680, 827, 1257, 1294, 1601, 1951
AluI	AGCT	8 cut(s)	241, 270, 680, 827, 1257, 1294, 1601, 1951
Alw21I	GWGCWC	2 cut(s)	547, 1603
Alw26I	GTCTC	5 cut(s)	304, 945, 1237, 1626, 2133
AlwI	GGATC	2 cut(s)	1452, 1648
Ama87I	CYCGRG	1 cut(s)	2088
AoxI	GGCC	3 cut(s)	9, 117, 352
ApeKI	GCWGC	3 cut(s)	827, 1148, 1392
ApoI	RAATTY	7 cut(s)	1027, 1095, 1115, 1240, 1398, 1727, 2051
Asp700I	GAANNNNTTC	1 cut(s)	1287
AspLEI	GCGC	3 cut(s)	481, 640, 1264
AspS9I	GGNCC	1 cut(s)	793
AsuC2I	CCSGG	2 cut(s)	211, 1742
AsuHPI	GGTGA	3 cut(s)	677, 686, 2050
AsuII	TTCGAA	1 cut(s)	961
AsuNHI	GCTAGC	2 cut(s)	740, 1951
AvaI	CYCGRG	1 cut(s)	2088
AvaII	GGWCC	1 cut(s)	793
BaeGI	GKGCMC	1 cut(s)	1552
BalI	TGGCCA	1 cut(s)	354
BanII	GRGCYC	2 cut(s)	490, 1603
BbsI	GAAGAC	1 cut(s)	1492
Bbv12I	GWGCWC	2 cut(s)	547, 1603
BbvI	GCAGC	3 cut(s)	814, 1135, 1379
BceAI	ACGGC	1 cut(s)	651
BciT130I	CCWGG	3 cut(s)	926, 1629, 2044
BclI	TGATCA	3 cut(s)	201, 702, 750
BcnI	CCSGG	2 cut(s)	211, 1742
BcoDI	GTCTC	5 cut(s)	304, 945, 1237, 1626, 2133
BfaI	CTAG	5 cut(s)	741, 867, 1044, 1815, 1952
BfmI	CTRYAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	641
BfrI	CTTAAG	1 cut(s)	1315
BglII	AGATCT	1 cut(s)	1811
BisI	GCNGC	3 cut(s)	828, 1149, 1393
BlsI	GCNGC	3 cut(s)	829, 1150, 1394
Bme1390I	CCNGG	5 cut(s)	211, 926, 1629, 1742, 2044
Bme18I	GGWCC	1 cut(s)	793
BmeRI	GACNNNNNGTC	1 cut(s)	317
BmeT110I	CYCGRG	1 cut(s)	2088
BmgT120I	GGNCC	1 cut(s)	793
BmrFI	CCNGG	5 cut(s)	211, 926, 1629, 1742, 2044
BmsI	GCATC	5 cut(s)	574, 753, 925, 1198, 1486
BmtI	GCTAGC	2 cut(s)	744, 1955
BpiI	GAAGAC	1 cut(s)	1492
BpmI	CTGGAG	3 cut(s)	536, 1611, 1812
Bpu14I	TTCGAA	1 cut(s)	961
BpuEI	CTTGAG	3 cut(s)	59, 704, 1048
BpuMI	CCSGG	2 cut(s)	211, 1742
BsaAI	YACGTR	1 cut(s)	284
BsaHI	GRCGYC	3 cut(s)	836, 938, 2094
BsaI	GGTCTC	1 cut(s)	1237
BsaJI	CCNNGG	4 cut(s)	48, 709, 796, 1104
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 1634, 2001
Bse1I	ACTGG	1 cut(s)	1681
Bse3DI	GCAATG	2 cut(s)	1752, 1956
BseBI	CCWGG	3 cut(s)	926, 1629, 2044
BseDI	CCNNGG	4 cut(s)	48, 709, 796, 1104
BseGI	GGATG	7 cut(s)	424, 589, 916, 1087, 1311, 1804, 1912
BseLI	CCNNNNNNNGG	3 cut(s)	115, 1634, 2001
BseMI	GCAATG	2 cut(s)	1752, 1956
BseMII	CTCAG	3 cut(s)	297, 671, 884
BseNI	ACTGG	1 cut(s)	1681
BseRI	GAGGAG	2 cut(s)	1865, 1925
BseSI	GKGCMC	1 cut(s)	1552
BseXI	GCAGC	3 cut(s)	814, 1135, 1379
BseYI	CCCAGC	1 cut(s)	1471
Bsh1236I	CGCG	1 cut(s)	481
BshFI	GGCC	3 cut(s)	11, 119, 354
BsiHKAI	GWGCWC	2 cut(s)	547, 1603
BsiHKCI	CYCGRG	1 cut(s)	2088
BsiSI	CCGG	3 cut(s)	210, 416, 1742
BslFI	GGGAC	5 cut(s)	151, 710, 1786, 2045, 2105
BslI	CCNNNNNNNGG	3 cut(s)	115, 1634, 2001
BsmAI	GTCTC	5 cut(s)	304, 945, 1237, 1626, 2133
BsmBI	CGTCTC	2 cut(s)	945, 1626
BsmFI	GGGAC	5 cut(s)	151, 710, 1786, 2045, 2105
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	3 cut(s)	11, 119, 354
Bso31I	GGTCTC	1 cut(s)	1237
BsoBI	CYCGRG	1 cut(s)	2088
Bsp119I	TTCGAA	1 cut(s)	961
Bsp1286I	GDGCHC	4 cut(s)	490, 547, 1552, 1603
Bsp143I	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
Bsp19I	CCATGG	1 cut(s)	796
BspACI	CCGC	2 cut(s)	481, 1176
BspANI	GGCC	3 cut(s)	11, 119, 354
BspCNI	CTCAG	3 cut(s)	298, 670, 885
BspFNI	CGCG	1 cut(s)	481
BspOI	GCTAGC	2 cut(s)	744, 1955
BspPI	GGATC	2 cut(s)	1452, 1648
BspT104I	TTCGAA	1 cut(s)	961
BspTI	CTTAAG	1 cut(s)	1315
BspTNI	GGTCTC	1 cut(s)	1237
BsrDI	GCAATG	2 cut(s)	1752, 1956
BsrI	ACTGG	1 cut(s)	1681
BssECI	CCNNGG	4 cut(s)	48, 709, 796, 1104
BssMI	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
BssNAI	GTATAC	1 cut(s)	732
BssNI	GRCGYC	3 cut(s)	836, 938, 2094
BssT1I	CCWWGG	3 cut(s)	48, 709, 796
Bst1107I	GTATAC	1 cut(s)	732
Bst2UI	CCWGG	3 cut(s)	926, 1629, 2044
Bst4CI	ACNGT	3 cut(s)	1108, 1943, 2036
Bst6I	CTCTTC	4 cut(s)	139, 356, 969, 1916
BstACI	GRCGYC	3 cut(s)	836, 938, 2094
BstAFI	CTTAAG	1 cut(s)	1315
BstBAI	YACGTR	1 cut(s)	284
BstBI	TTCGAA	1 cut(s)	961
BstC8I	GCNNGC	6 cut(s)	42, 742, 1060, 1363, 1479, 1953
BstDEI	CTNAG	6 cut(s)	170, 306, 657, 893, 1556, 1834
BstDSI	CCRYGG	2 cut(s)	796, 1104
BstF5I	GGATG	7 cut(s)	424, 589, 916, 1087, 1311, 1804, 1912
BstFNI	CGCG	1 cut(s)	481
BstH2I	RGCGCY	1 cut(s)	641
BstHHI	GCGC	3 cut(s)	481, 640, 1264
BstKTI	GATC	6 cut(s)	204, 705, 753, 1447, 1643, 1814
BstMAI	GTCTC	5 cut(s)	304, 945, 1237, 1626, 2133
BstMBI	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
BstMWI	GCNNNNNNNGC	5 cut(s)	485, 833, 1148, 1598, 2093
BstNI	CCWGG	3 cut(s)	926, 1629, 2044
BstNSI	RCATGY	4 cut(s)	317, 1062, 1365, 1566
BstSCI	CCNGG	5 cut(s)	209, 924, 1627, 1740, 2042
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	1552
BstUI	CGCG	1 cut(s)	481
BstV1I	GCAGC	3 cut(s)	814, 1135, 1379
BstV2I	GAAGAC	1 cut(s)	1492
BstX2I	RGATCY	2 cut(s)	1640, 1811
BstYI	RGATCY	2 cut(s)	1640, 1811
BstZ17I	GTATAC	1 cut(s)	732
BsuRI	GGCC	3 cut(s)	11, 119, 354
BtgI	CCRYGG	2 cut(s)	796, 1104
BtsCI	GGATG	7 cut(s)	424, 589, 916, 1087, 1311, 1804, 1912
BtsI	GCAGTG	1 cut(s)	1550
BtsIMutI	CAGTG	3 cut(s)	507, 1550, 1948
Cac8I	GCNNGC	6 cut(s)	42, 742, 1060, 1363, 1479, 1953
CfoI	GCGC	3 cut(s)	481, 640, 1264
Cfr13I	GGNCC	1 cut(s)	793
CseI	GACGC	2 cut(s)	825, 2102
CsiI	ACCWGGT	1 cut(s)	924
Csp6I	GTAC	4 cut(s)	214, 424, 1710, 1933
CviQI	GTAC	4 cut(s)	214, 424, 1710, 1933
DdeI	CTNAG	6 cut(s)	170, 306, 657, 893, 1556, 1834
DpnI	GATC	6 cut(s)	203, 704, 752, 1446, 1642, 1813
DpnII	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
DraI	TTTAAA	1 cut(s)	904
DriI	GACNNNNNGTC	1 cut(s)	317
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	4 cut(s)	139, 356, 969, 1916
Eam1105I	GACNNNNNGTC	1 cut(s)	317
EarI	CTCTTC	4 cut(s)	139, 356, 969, 1916
Ecl136II	GAGCTC	1 cut(s)	1601
Eco130I	CCWWGG	3 cut(s)	48, 709, 796
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	2 cut(s)	490, 1603
Eco31I	GGTCTC	1 cut(s)	1237
Eco47I	GGWCC	1 cut(s)	793
Eco53kI	GAGCTC	1 cut(s)	1601
Eco57I	CTGAAG	2 cut(s)	1037, 1274
Eco88I	CYCGRG	1 cut(s)	2088
EcoICRI	GAGCTC	1 cut(s)	1601
EcoRI	GAATTC	2 cut(s)	1027, 1240
EcoRII	CCWGG	3 cut(s)	924, 1627, 2042
EcoT14I	CCWWGG	3 cut(s)	48, 709, 796
EcoT38I	GRGCYC	2 cut(s)	490, 1603
ErhI	CCWWGG	3 cut(s)	48, 709, 796
Esp3I	CGTCTC	2 cut(s)	945, 1626
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	5 cut(s)	151, 710, 1786, 2045, 2105
FauNDI	CATATG	1 cut(s)	198
FbaI	TGATCA	3 cut(s)	201, 702, 750
FblI	GTMKAC	1 cut(s)	731
Fnu4HI	GCNGC	3 cut(s)	828, 1149, 1393
FokI	GGATG	7 cut(s)	431, 596, 903, 1094, 1318, 1791, 1919
FriOI	GRGCYC	2 cut(s)	490, 1603
Fsp4HI	GCNGC	3 cut(s)	828, 1149, 1393
FspBI	CTAG	5 cut(s)	741, 867, 1044, 1815, 1952
FspI	TGCGCA	1 cut(s)	1263
GlaI	GCGC	3 cut(s)	480, 639, 1263
GluI	GCNGC	3 cut(s)	828, 1149, 1393
GsaI	CCCAGC	1 cut(s)	1475
GsuI	CTGGAG	3 cut(s)	536, 1611, 1812
HaeII	RGCGCY	1 cut(s)	641
HaeIII	GGCC	3 cut(s)	11, 119, 354
HapII	CCGG	3 cut(s)	210, 416, 1742
HgaI	GACGC	2 cut(s)	825, 2102
HhaI	GCGC	3 cut(s)	481, 640, 1264
Hin1I	GRCGYC	3 cut(s)	836, 938, 2094
Hin6I	GCGC	3 cut(s)	479, 638, 1262
HinP1I	GCGC	3 cut(s)	479, 638, 1262
HincII	GTYRAC	2 cut(s)	1437, 1656
HindII	GTYRAC	2 cut(s)	1437, 1656
HinfI	GANTC	6 cut(s)	142, 601, 887, 1006, 1013, 1687
HpaII	CCGG	3 cut(s)	210, 416, 1742
HphI	GGTGA	3 cut(s)	677, 686, 2050
Hpy166II	GTNNAC	8 cut(s)	426, 633, 732, 1437, 1568, 1656, 1765, 1777
Hpy188I	TCNGA	4 cut(s)	141, 192, 894, 1026
Hpy8I	GTNNAC	8 cut(s)	426, 633, 732, 1437, 1568, 1656, 1765, 1777
Hpy99I	CGWCG	1 cut(s)	299
HpyAV	CCTTC	1 cut(s)	1079
HpyCH4III	ACNGT	3 cut(s)	1108, 1943, 2036
HpyCH4IV	ACGT	3 cut(s)	283, 428, 938
HpyCH4V	TGCA	9 cut(s)	44, 153, 281, 563, 587, 1365, 1384, 1562, 1858
HpyF10VI	GCNNNNNNNGC	5 cut(s)	485, 833, 1148, 1598, 2093
HpyF3I	CTNAG	6 cut(s)	170, 306, 657, 893, 1556, 1834
HpySE526I	ACGT	3 cut(s)	283, 428, 938
Hsp92I	GRCGYC	3 cut(s)	836, 938, 2094
HspAI	GCGC	3 cut(s)	479, 638, 1262
Ksp22I	TGATCA	3 cut(s)	201, 702, 750
Kzo9I	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
LmnI	GCTCC	1 cut(s)	1630
Lsp1109I	GCAGC	3 cut(s)	814, 1135, 1379
LweI	GCATC	5 cut(s)	574, 753, 925, 1198, 1486
MabI	ACCWGGT	1 cut(s)	924
MaeI	CTAG	5 cut(s)	741, 867, 1044, 1815, 1952
MaeII	ACGT	3 cut(s)	283, 428, 938
MaeIII	GTNAC	7 cut(s)	650, 837, 928, 1108, 1336, 1893, 2056
MalI	GATC	6 cut(s)	203, 704, 752, 1446, 1642, 1813
MboI	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
MflI	RGATCY	2 cut(s)	1640, 1811
MhlI	GDGCHC	4 cut(s)	490, 547, 1552, 1603
MlsI	TGGCCA	1 cut(s)	354
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	1 cut(s)	1696
Mox20I	TGGCCA	1 cut(s)	354
MroXI	GAANNNNTTC	1 cut(s)	1287
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	7 cut(s)	717, 776, 903, 1158, 1316, 2019, 2115
MslI	CAYNNNNRTG	3 cut(s)	666, 1137, 1784
Msp20I	TGGCCA	1 cut(s)	354
MspCI	CTTAAG	1 cut(s)	1315
MspI	CCGG	3 cut(s)	210, 416, 1742
MspR9I	CCNGG	5 cut(s)	211, 926, 1629, 1742, 2044
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	3 cut(s)	926, 1629, 2044
MvnI	CGCG	1 cut(s)	481
MwoI	GCNNNNNNNGC	5 cut(s)	485, 833, 1148, 1598, 2093
NciI	CCSGG	2 cut(s)	211, 1742
NcoI	CCATGG	1 cut(s)	796
NdeI	CATATG	1 cut(s)	198
NdeII	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
NheI	GCTAGC	2 cut(s)	740, 1951
NmuCI	GTSAC	3 cut(s)	837, 1108, 2056
NsbI	TGCGCA	1 cut(s)	1263
NspI	RCATGY	4 cut(s)	317, 1062, 1365, 1566
NspV	TTCGAA	1 cut(s)	961
PaeI	GCATGC	2 cut(s)	1062, 1365
PceI	AGGCCT	1 cut(s)	119
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	1287
PfeI	GAWTC	5 cut(s)	142, 601, 887, 1006, 1013
PflFI	GACNNNGTC	1 cut(s)	163
PfoI	TCCNGGA	2 cut(s)	1627, 2042
PkrI	GCNGC	3 cut(s)	829, 1150, 1394
PleI	GAGTC	1 cut(s)	1695
PpsI	GAGTC	1 cut(s)	1695
Ppu21I	YACGTR	1 cut(s)	284
PscI	ACATGT	1 cut(s)	313
PsiI	TTATAA	1 cut(s)	59
Psp124BI	GAGCTC	1 cut(s)	1603
Psp6I	CCWGG	3 cut(s)	924, 1627, 2042
PspFI	CCCAGC	1 cut(s)	1471
PspGI	CCWGG	3 cut(s)	924, 1627, 2042
PspPI	GGNCC	1 cut(s)	793
PsuI	RGATCY	2 cut(s)	1640, 1811
PsyI	GACNNNGTC	1 cut(s)	163
RsaI	GTAC	4 cut(s)	215, 425, 1711, 1934
RsaNI	GTAC	4 cut(s)	214, 424, 1710, 1933
RseI	CAYNNNNRTG	3 cut(s)	666, 1137, 1784
SacI	GAGCTC	1 cut(s)	1603
SaqAI	TTAA	7 cut(s)	717, 776, 903, 1158, 1316, 2019, 2115
SatI	GCNGC	3 cut(s)	828, 1149, 1393
Sau3AI	GATC	6 cut(s)	201, 702, 750, 1444, 1640, 1811
Sau96I	GGNCC	1 cut(s)	793
SchI	GAGTC	1 cut(s)	1696
ScrFI	CCNGG	5 cut(s)	211, 926, 1629, 1742, 2044
SduI	GDGCHC	4 cut(s)	490, 547, 1552, 1603
SexAI	ACCWGGT	1 cut(s)	924
SfaNI	GCATC	5 cut(s)	574, 753, 925, 1198, 1486
SfcI	CTRYAG	1 cut(s)	228
SfuI	TTCGAA	1 cut(s)	961
SinI	GGWCC	1 cut(s)	793
SmiMI	CAYNNNNRTG	3 cut(s)	666, 1137, 1784
SmlI	CTYRAG	4 cut(s)	74, 683, 1063, 1315
SmoI	CTYRAG	4 cut(s)	74, 683, 1063, 1315
SphI	GCATGC	2 cut(s)	1062, 1365
SseBI	AGGCCT	1 cut(s)	119
SsiI	CCGC	2 cut(s)	481, 1176
SspI	AATATT	2 cut(s)	1429, 1863
SspMI	CTAG	5 cut(s)	741, 867, 1044, 1815, 1952
SstI	GAGCTC	1 cut(s)	1603
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	5 cut(s)	209, 924, 1627, 1740, 2042
StyI	CCWWGG	3 cut(s)	48, 709, 796
TaaI	ACNGT	3 cut(s)	1108, 1943, 2036
TaiI	ACGT	3 cut(s)	286, 431, 941
TaqI	TCGA	4 cut(s)	294, 434, 599, 961
TatI	WGTACW	3 cut(s)	423, 1709, 1932
TfiI	GAWTC	5 cut(s)	142, 601, 887, 1006, 1013
Tru1I	TTAA	7 cut(s)	717, 776, 903, 1158, 1316, 2019, 2115
Tru9I	TTAA	7 cut(s)	717, 776, 903, 1158, 1316, 2019, 2115
TscAI	CASTG	3 cut(s)	507, 1557, 1948
TseFI	GTSAC	3 cut(s)	837, 1108, 2056
TseI	GCWGC	3 cut(s)	827, 1148, 1392
Tsp45I	GTSAC	3 cut(s)	837, 1108, 2056
TspGWI	ACGGA	1 cut(s)	1650
TspRI	CASTG	3 cut(s)	507, 1557, 1948
Tth111I	GACNNNGTC	1 cut(s)	163
Vha464I	CTTAAG	1 cut(s)	1315
VpaK11BI	GGWCC	1 cut(s)	793
XapI	RAATTY	7 cut(s)	1027, 1095, 1115, 1240, 1398, 1727, 2051
XbaI	TCTAGA	1 cut(s)	1814
XceI	RCATGY	4 cut(s)	317, 1062, 1365, 1566
XmiI	GTMKAC	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	1287
XspI	CTAG	5 cut(s)	741, 867, 1044, 1815, 1952
ZraI	GACGTC	1 cut(s)	939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.