Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0012237

Physical Location & Seq

Genomic Coordinates Forward (+)

29076698 .. 29079459

Gene Structure 2762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018386

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1935 bp

ATGACATGCACTCAAACATTGATCAAAACGACGTCGAAGATAGCGGCCTTTGCAAGGTTGGGTCACATCAACCATGCCCGCCAACTGTTCGACGAAATGCCTCACCGAGACTCCATTGCTTGGAACGCAATGCTCACCGCCTACACCCAACTGGGCTTCCACCACCAAGCTCTCTCTCTTCTCGGCAGCATGAGAATCTCCAACACCCGGCCCGATCACTTCACCTTCACCGCTGCACTAAGCGCCTGTGCCGGCGCATGTAACTTTCGATGTGGAACCAAATTACATTGTTTACTCACTGTTTTGGGTTACCAGTCTTACTTGCCGGTCAACAATGCGCTTATTGATATGTATGGCAAGTGCTTGGAGCCTTGCAGTGCTACTAGAGTGTTTGAAGAGATGAAACTTAGGAATGAAGTAGCTTGGTGTTCTTTGTTATTTGCATACACAAACTCCGGACTGTTTGACGCCGCGCGTGAAGTGTTTTTTGTAATGCCTAGAAGGGTGGAGAGAGCTTGGAATGTTATGATTGTGGGTTATGCACGAAACGGGGAAGTGGAGATGTGTTTGGGGTTGTTGAAAGAGATGAAAGAGGGTTTGTGCCGGCCAGATCAGTGGACTTTCAGTGCTCTGATGAATGCTTGCGCGGAGGCATTGGAATTTCGGTGTGGTTGCATGCTGCATGCTTTCATCATTAAAAGTGGTTGGAGCTCTTCTGCAGAGGTGAAGAACTCGGTTTTGAGTTTTTATGCTGAATTAGGTTGCCTGGGCAATGCTGTGAAGGTGTTTGAGTCTGGTGGAACTCTAACACAGGTGTCCTGGAATGCGATGATTGATACCTACATGAAACTGGGAAATACCCATGAAGCACTTCGTGTGTTTCAGCTATCCCCCGAACAGAATATTGTCTCATGGACATCTATGATCTCAGGGTATGCAAGAAATGGACGTGGGGAAGAAGCTGCAATGTTCTTTGTTGATATGTTGAGAACCGGACTCGAACCAGATGATTTCAGTTTTGCTGCCGTCCTTCATGCATGTTCAAACTTAGCAGTACTTGGATGCGGGGAAATGTTTCACGGTTGCATAATTCACTATGGTTTCCATGCATATGCGTTTATTGGGAACGGCTTGGTTAACATGTATGCTAAATGCGGGGATTTGAAAGGGTCCATCCGTGCATTCCGTGATATATTGCACAAGGATTTGGTATCTTGGAACGCGATGTTGTTTGCATTTGGATTACATGGAAAAGCTATCGAAACTCTACAATTTTTTGAACAAATGGTGGTAAATGGTGTCAAACCAGATAATGTTACCTTTATCGGCTTGTTGATGGCTTGCAGCCACTCTGGATTGATAGGAGAAAGTCATGCACTTTTTGAAACAATGCAGACAATTTATGGGCTCTCTCCTGACAAATATCATGTGGCATGCATGGTGGATATGCTTGGAAGAGGTGGCTACGTAGCTGAAGCTAAGGAACTGGCTGATAGGTATTGTTCGGTATATAGTGCTAAAATCAGCTCGCGTGAAGCTCTGCTTGGAGCATGTTCTGCACATGGGGAGTTGGGATTTGGAAAATATTTGGGGGAAACGCTGAAAATAACAGAACCACATAATGAGACAAGCTATGTGTTATTGTCAAATTTGTATTGTGCAAGTGGGCAATGGAAGGAAGCTGAAATGGTTAGGAAGAGAATGGCAGATCAAGGGGTGAAGAAAATGCCTGGATGTAGTTGGATAGAAGTGAGAAACAAGGTAATGGCTTTTGTTGCAGGGAAGAATTCTGATCCATTTATGGATGACGTAGCACCAAAACGGAAAGAGTTCTTTGAGAGGCTGGAAGAACAGAAAAGGGGAGAGGCAGAAAGTAAGCAGCTGCAAATGAGATCTAACGGGATGCTCGAAGGAGATCCACCACTTTCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

645

Amino Acids

71.63

Weight (kDa)

6.7

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	37 - 84	4.9e-08	PPR repeat family
PPR_2	PF13041	172 - 216	9.5e-12	PPR repeat family
PPR	PF01535	172 - 198	3.3e-07	PPR repeat
PPR_2	PF13041	301 - 348	6.2e-12	PPR repeat family
PPR	PF01535	303 - 332	9.6e-08	PPR repeat
PPR_2	PF13041	402 - 449	1.5e-07	PPR repeat family
E_motif	PF20431	523 - 583	5.6e-17	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36980 AT2G36980 AT2G36980
fragaria_vesca	FvH4_1g23230 FvH4_1g23230
malus_domestica	MD15G1335400.v1.1
prunus_persica	Prupe.6G167400_v2.0.a1
pyrus_communis	pycom15g29000
rosa_chinensis	RchiOBHm_Chr2g0118001
rosa_laevigata	RLG00000018386
rosa_multiflora	Rmu_sc0000948.1_g000020
rosa_roxburghii	Rroxscaffold_2G00126070
rosa_rugosa	Rorug02G0215300
rosa_samantha	Rh2AG271900 Rh2BG284000 Rh2CG325400 Rh2DG280300 Rh2DG298100
rosa_wichuraiana	Rw2G021500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccB7I	CCANNNNNTGG	1 cut(s)	120
AccII	CGCG	5 cut(s)	473, 475, 647, 1223, 1531
AccIII	TCCGGA	1 cut(s)	455
AciI	CCGC	8 cut(s)	44, 79, 138, 231, 471, 647, 1065, 1155
AclWI	GGATC	2 cut(s)	1787, 1910
AcoI	YGGCCR	1 cut(s)	605
AcsI	RAATTY	3 cut(s)	659, 1648, 1786
AcuI	CTGAAG	1 cut(s)	1494
AcyI	GRCGYC	2 cut(s)	32, 468
AdeI	CACNNNGTG	1 cut(s)	875
AfaI	GTAC	1 cut(s)	1056
AfiI	CCNNNNNNNGG	3 cut(s)	54, 120, 207
AflIII	ACRYGT	1 cut(s)	1140
AgsI	TTSAA	7 cut(s)	395, 580, 1044, 1165, 1280, 1385, 1929
AjiI	CACGTC	1 cut(s)	950
AjnI	CCWGG	3 cut(s)	765, 818, 1729
AjuI	GAANNNNNNNTTGG	2 cut(s)	1527, 1559
Alw21I	GWGCWC	2 cut(s)	631, 713
Alw26I	GTCTC	3 cut(s)	102, 913, 1619
AlwI	GGATC	2 cut(s)	1787, 1910
Aor13HI	TCCGGA	1 cut(s)	455
AoxI	GGCC	3 cut(s)	45, 209, 605
ApeKI	GCWGC	8 cut(s)	186, 233, 679, 962, 1022, 1344, 1879, 1882
ApoI	RAATTY	3 cut(s)	659, 1648, 1786
Asp700I	GAANNNNTTC	3 cut(s)	870, 1074, 1829
AspLEI	GCGC	5 cut(s)	245, 257, 340, 475, 647
AspS9I	GGNCC	2 cut(s)	210, 1170
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	6 cut(s)	95, 127, 214, 220, 736, 1729
AvaII	GGWCC	1 cut(s)	1170
BanII	GRGCYC	2 cut(s)	713, 1410
Bbv12I	GWGCWC	2 cut(s)	631, 713
BbvI	GCAGC	8 cut(s)	198, 220, 666, 949, 1009, 1356, 1869, 1891
BccI	CCATC	2 cut(s)	1181, 1330
BceAI	ACGGC	2 cut(s)	1010, 1144
BciT130I	CCWGG	3 cut(s)	767, 820, 1731
BclI	TGATCA	1 cut(s)	21
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	102, 913, 1619
BfaI	CTAG	2 cut(s)	384, 498
BfmI	CTRYAG	1 cut(s)	717
BfoI	RGCGCY	1 cut(s)	246
BglII	AGATCT	1 cut(s)	1892
BmcAI	AGTACT	1 cut(s)	1056
Bme1390I	CCNGG	4 cut(s)	208, 767, 820, 1731
Bme18I	GGWCC	1 cut(s)	1170
BmgBI	CACGTC	1 cut(s)	950
BmgT120I	GGNCC	2 cut(s)	210, 1170
BmiI	GGNNCC	3 cut(s)	277, 369, 1171
BmrFI	CCNGG	4 cut(s)	208, 767, 820, 1731
BmrI	ACTGGG	2 cut(s)	161, 860
BmsI	GCATC	2 cut(s)	1052, 1893
BmuI	ACTGGG	2 cut(s)	161, 860
Bpu10I	CCTNAGC	1 cut(s)	1479
BpuMI	CCSGG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	1468
BsaHI	GRCGYC	2 cut(s)	32, 468
BsaJI	CCNNGG	1 cut(s)	766
BsaWI	WCCGGW	2 cut(s)	455, 992
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 437, 467
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 120, 207
Bse118I	RCCGGY	3 cut(s)	251, 325, 603
Bse1I	ACTGG	4 cut(s)	156, 313, 855, 1491
Bse3DI	GCAATG	5 cut(s)	114, 135, 778, 972, 1676
BseAI	TCCGGA	1 cut(s)	455
BseBI	CCWGG	3 cut(s)	767, 820, 1731
BseDI	CCNNGG	1 cut(s)	766
BseGI	GGATG	5 cut(s)	1067, 1173, 1739, 1810, 1908
BseLI	CCNNNNNNNGG	3 cut(s)	54, 120, 207
BseMI	GCAATG	5 cut(s)	114, 135, 778, 972, 1676
BseMII	CTCAG	1 cut(s)	942
BseNI	ACTGG	4 cut(s)	156, 313, 855, 1491
BseXI	GCAGC	8 cut(s)	198, 220, 666, 949, 1009, 1356, 1869, 1891
BsgI	GTGCAG	2 cut(s)	219, 1542
Bsh1236I	CGCG	5 cut(s)	473, 475, 647, 1223, 1531
BshFI	GGCC	3 cut(s)	47, 211, 607
BsiHKAI	GWGCWC	2 cut(s)	631, 713
BsiSI	CCGG	6 cut(s)	208, 252, 326, 456, 604, 993
BslI	CCNNNNNNNGG	3 cut(s)	54, 120, 207
BsmAI	GTCTC	3 cut(s)	102, 913, 1619
BsmI	GAATGC	3 cut(s)	643, 829, 1181
BsnI	GGCC	3 cut(s)	47, 211, 607
Bsp1286I	GDGCHC	3 cut(s)	631, 713, 1410
Bsp13I	TCCGGA	1 cut(s)	455
Bsp143I	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
BspACI	CCGC	8 cut(s)	44, 79, 138, 231, 471, 647, 1065, 1155
BspANI	GGCC	3 cut(s)	47, 211, 607
BspCNI	CTCAG	1 cut(s)	941
BspEI	TCCGGA	1 cut(s)	455
BspFNI	CGCG	5 cut(s)	473, 475, 647, 1223, 1531
BspLI	GGNNCC	3 cut(s)	277, 369, 1171
BspMAI	CTGCAG	1 cut(s)	721
BspPI	GGATC	2 cut(s)	1787, 1910
BspQI	GCTCTTC	1 cut(s)	718
BsrDI	GCAATG	5 cut(s)	114, 135, 778, 972, 1676
BsrFI	RCCGGY	3 cut(s)	251, 325, 603
BsrI	ACTGG	4 cut(s)	156, 313, 855, 1491
BssAI	RCCGGY	3 cut(s)	251, 325, 603
BssECI	CCNNGG	1 cut(s)	766
BssMI	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
BssNI	GRCGYC	2 cut(s)	32, 468
Bst2UI	CCWGG	3 cut(s)	767, 820, 1731
Bst4CI	ACNGT	4 cut(s)	87, 301, 462, 1082
Bst6I	CTCTTC	5 cut(s)	183, 390, 718, 1450, 1691
BstACI	GRCGYC	2 cut(s)	32, 468
BstAPI	GCANNNNNTGC	1 cut(s)	1556
BstBAI	YACGTR	1 cut(s)	1468
BstC8I	GCNNGC	9 cut(s)	79, 253, 605, 643, 677, 684, 1342, 1435, 1529
BstDEI	CTNAG	5 cut(s)	239, 407, 928, 1048, 1479
BstEII	GGTNACC	1 cut(s)	308
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	5 cut(s)	1067, 1173, 1739, 1810, 1908
BstFNI	CGCG	5 cut(s)	473, 475, 647, 1223, 1531
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	5 cut(s)	245, 257, 340, 475, 647
BstKTI	GATC	8 cut(s)	24, 217, 613, 927, 1711, 1795, 1895, 1918
BstMAI	GTCTC	3 cut(s)	102, 913, 1619
BstMBI	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 125, 242, 1556, 1775
BstNI	CCWGG	3 cut(s)	767, 820, 1731
BstNSI	RCATGY	8 cut(s)	9, 261, 679, 686, 1041, 1144, 1437, 1554
BstPI	GGTNACC	1 cut(s)	308
BstSCI	CCNGG	4 cut(s)	206, 765, 818, 1729
BstSFI	CTRYAG	1 cut(s)	717
BstSNI	TACGTA	1 cut(s)	1468
BstUI	CGCG	5 cut(s)	473, 475, 647, 1223, 1531
BstV1I	GCAGC	8 cut(s)	198, 220, 666, 949, 1009, 1356, 1869, 1891
BstX2I	RGATCY	2 cut(s)	1892, 1915
BstXI	CCANNNNNNTGG	1 cut(s)	615
BstYI	RGATCY	2 cut(s)	1892, 1915
BsuRI	GGCC	3 cut(s)	47, 211, 607
BtgZI	GCGATG	2 cut(s)	842, 1238
BtrI	CACGTC	1 cut(s)	950
BtsCI	GGATG	5 cut(s)	1067, 1173, 1739, 1810, 1908
BtsI	GCAGTG	1 cut(s)	382
BtsIMutI	CAGTG	4 cut(s)	297, 382, 620, 631
Cac8I	GCNNGC	9 cut(s)	79, 253, 605, 643, 677, 684, 1342, 1435, 1529
CfoI	GCGC	5 cut(s)	245, 257, 340, 475, 647
Cfr10I	RCCGGY	3 cut(s)	251, 325, 603
Cfr13I	GGNCC	2 cut(s)	210, 1170
CseI	GACGC	1 cut(s)	476
Csp6I	GTAC	1 cut(s)	1055
CviQI	GTAC	1 cut(s)	1055
DdeI	CTNAG	5 cut(s)	239, 407, 928, 1048, 1479
DpnI	GATC	8 cut(s)	23, 216, 612, 926, 1710, 1794, 1894, 1917
DpnII	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
DraIII	CACNNNGTG	1 cut(s)	875
EaeI	YGGCCR	1 cut(s)	605
Eam1104I	CTCTTC	5 cut(s)	183, 390, 718, 1450, 1691
EarI	CTCTTC	5 cut(s)	183, 390, 718, 1450, 1691
Ecl136II	GAGCTC	1 cut(s)	711
Eco105I	TACGTA	1 cut(s)	1468
Eco24I	GRGCYC	2 cut(s)	713, 1410
Eco47I	GGWCC	1 cut(s)	1170
Eco53kI	GAGCTC	1 cut(s)	711
Eco57I	CTGAAG	1 cut(s)	1494
Eco91I	GGTNACC	1 cut(s)	308
EcoICRI	GAGCTC	1 cut(s)	711
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoO65I	GGTNACC	1 cut(s)	308
EcoRI	GAATTC	1 cut(s)	1786
EcoRII	CCWGG	3 cut(s)	765, 818, 1729
EcoT22I	ATGCAT	3 cut(s)	1039, 1111, 1439
EcoT38I	GRGCYC	2 cut(s)	713, 1410
FalI	AAGNNNNNCTT	2 cut(s)	1527, 1559
FauI	CCCGC	3 cut(s)	86, 1058, 1148
FauNDI	CATATG	1 cut(s)	1111
FbaI	TGATCA	1 cut(s)	21
FokI	GGATG	5 cut(s)	1074, 1160, 1746, 1817, 1915
FriOI	GRGCYC	2 cut(s)	713, 1410
FspBI	CTAG	2 cut(s)	384, 498
GlaI	GCGC	5 cut(s)	244, 256, 339, 474, 646
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	3 cut(s)	47, 211, 607
HapII	CCGG	6 cut(s)	208, 252, 326, 456, 604, 993
HgaI	GACGC	1 cut(s)	476
HhaI	GCGC	5 cut(s)	245, 257, 340, 475, 647
Hin1I	GRCGYC	2 cut(s)	32, 468
Hin6I	GCGC	5 cut(s)	243, 255, 338, 473, 645
HinP1I	GCGC	5 cut(s)	243, 255, 338, 473, 645
HincII	GTYRAC	2 cut(s)	331, 1138
HindII	GTYRAC	2 cut(s)	331, 1138
HinfI	GANTC	4 cut(s)	110, 195, 791, 996
HpaI	GTTAAC	1 cut(s)	1138
HpaII	CCGG	6 cut(s)	208, 252, 326, 456, 604, 993
HphI	GGTGA	6 cut(s)	95, 127, 214, 220, 736, 1729
Hpy166II	GTNNAC	4 cut(s)	293, 331, 618, 1138
Hpy188I	TCNGA	2 cut(s)	633, 1792
Hpy188III	TCNNGA	3 cut(s)	456, 1353, 1415
Hpy8I	GTNNAC	4 cut(s)	293, 331, 618, 1138
Hpy99I	CGWCG	3 cut(s)	34, 37, 95
HpyAV	CCTTC	6 cut(s)	235, 495, 775, 1040, 1669, 1904
HpyCH4III	ACNGT	4 cut(s)	87, 301, 462, 1082
HpyCH4IV	ACGT	4 cut(s)	32, 949, 1467, 1809
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 125, 242, 1556, 1775
HpyF3I	CTNAG	5 cut(s)	239, 407, 928, 1048, 1479
HpySE526I	ACGT	4 cut(s)	32, 949, 1467, 1809
Hsp92I	GRCGYC	2 cut(s)	32, 468
HspAI	GCGC	5 cut(s)	243, 255, 338, 473, 645
Kpn2I	TCCGGA	1 cut(s)	455
KroI	GCCGGC	2 cut(s)	251, 603
KroNI	GCCGGC	2 cut(s)	253, 605
Ksp22I	TGATCA	1 cut(s)	21
KspAI	GTTAAC	1 cut(s)	1138
Kzo9I	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
LguI	GCTCTTC	1 cut(s)	718
LmnI	GCTCC	3 cut(s)	367, 708, 1547
Lsp1109I	GCAGC	8 cut(s)	198, 220, 666, 949, 1009, 1356, 1869, 1891
LweI	GCATC	2 cut(s)	1052, 1893
MaeI	CTAG	2 cut(s)	384, 498
MaeII	ACGT	4 cut(s)	32, 949, 1467, 1809
MaeIII	GTNAC	4 cut(s)	62, 260, 308, 1315
MalI	GATC	8 cut(s)	23, 216, 612, 926, 1710, 1794, 1894, 1917
MboI	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
MflI	RGATCY	2 cut(s)	1892, 1915
MhlI	GDGCHC	3 cut(s)	631, 713, 1410
MluCI	AATT	9 cut(s)	281, 659, 755, 1089, 1271, 1398, 1648, 1786, 1930
MlyI	GAGTC	3 cut(s)	104, 800, 990
MmeI	TCCRAC	3 cut(s)	225, 686, 1721
MnlI	CCTC	7 cut(s)	111, 586, 643, 715, 1451, 1833, 1858
Mph1103I	ATGCAT	3 cut(s)	1039, 1111, 1439
MroI	TCCGGA	1 cut(s)	455
MroNI	GCCGGC	2 cut(s)	251, 603
MroXI	GAANNNNTTC	3 cut(s)	870, 1074, 1829
MseI	TTAA	3 cut(s)	696, 1137, 1933
MslI	CAYNNNNRTG	1 cut(s)	1110
MspA1I	CMGCKG	2 cut(s)	233, 1882
MspI	CCGG	6 cut(s)	208, 252, 326, 456, 604, 993
MspR9I	CCNGG	4 cut(s)	208, 767, 820, 1731
Mva1269I	GAATGC	3 cut(s)	643, 829, 1181
MvaI	CCWGG	3 cut(s)	767, 820, 1731
MvnI	CGCG	5 cut(s)	473, 475, 647, 1223, 1531
MwoI	GCNNNNNNNGC	5 cut(s)	50, 125, 242, 1556, 1775
NaeI	GCCGGC	2 cut(s)	253, 605
NciI	CCSGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	1111
NdeII	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
NgoMIV	GCCGGC	2 cut(s)	251, 603
NlaIV	GGNNCC	3 cut(s)	277, 369, 1171
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	62
NsiI	ATGCAT	3 cut(s)	1039, 1111, 1439
NspI	RCATGY	8 cut(s)	9, 261, 679, 686, 1041, 1144, 1437, 1554
PaeI	GCATGC	3 cut(s)	679, 686, 1437
PciI	ACATGT	1 cut(s)	1140
PciSI	GCTCTTC	1 cut(s)	718
PcsI	WCGNNNNNNNCGW	1 cut(s)	1905
PctI	GAATGC	3 cut(s)	643, 829, 1181
PdiI	GCCGGC	2 cut(s)	253, 605
PdmI	GAANNNNTTC	3 cut(s)	870, 1074, 1829
PfeI	GAWTC	1 cut(s)	195
PflMI	CCANNNNNTGG	1 cut(s)	120
PfoI	TCCNGGA	1 cut(s)	818
PleI	GAGTC	3 cut(s)	104, 799, 990
PpsI	GAGTC	3 cut(s)	104, 799, 990
Ppu21I	YACGTR	1 cut(s)	1468
PscI	ACATGT	1 cut(s)	1140
Psp124BI	GAGCTC	1 cut(s)	713
Psp6I	CCWGG	3 cut(s)	765, 818, 1729
PspEI	GGTNACC	1 cut(s)	308
PspGI	CCWGG	3 cut(s)	765, 818, 1729
PspN4I	GGNNCC	3 cut(s)	277, 369, 1171
PspPI	GGNCC	2 cut(s)	210, 1170
PstI	CTGCAG	1 cut(s)	721
PsuI	RGATCY	2 cut(s)	1892, 1915
PvuII	CAGCTG	1 cut(s)	1882
RsaI	GTAC	1 cut(s)	1056
RsaNI	GTAC	1 cut(s)	1055
RseI	CAYNNNNRTG	1 cut(s)	1110
SacI	GAGCTC	1 cut(s)	713
SapI	GCTCTTC	1 cut(s)	718
SaqAI	TTAA	3 cut(s)	696, 1137, 1933
Sau3AI	GATC	8 cut(s)	21, 214, 610, 924, 1708, 1792, 1892, 1915
Sau96I	GGNCC	2 cut(s)	210, 1170
ScaI	AGTACT	1 cut(s)	1056
SchI	GAGTC	3 cut(s)	104, 800, 990
ScrFI	CCNGG	4 cut(s)	208, 767, 820, 1731
SduI	GDGCHC	3 cut(s)	631, 713, 1410
SfaNI	GCATC	2 cut(s)	1052, 1893
SfcI	CTRYAG	1 cut(s)	717
SinI	GGWCC	1 cut(s)	1170
SmiMI	CAYNNNNRTG	1 cut(s)	1110
SnaBI	TACGTA	1 cut(s)	1468
SphI	GCATGC	3 cut(s)	679, 686, 1437
Sse9I	AATT	9 cut(s)	281, 659, 755, 1089, 1271, 1398, 1648, 1786, 1930
SsiI	CCGC	8 cut(s)	44, 79, 138, 231, 471, 647, 1065, 1155
SspI	AATATT	2 cut(s)	904, 1586
SspMI	CTAG	2 cut(s)	384, 498
SstI	GAGCTC	1 cut(s)	713
StyD4I	CCNGG	4 cut(s)	206, 765, 818, 1729
TaaI	ACNGT	4 cut(s)	87, 301, 462, 1082
TaiI	ACGT	4 cut(s)	35, 952, 1470, 1812
TaqI	TCGA	6 cut(s)	35, 90, 268, 999, 1260, 1908
TasI	AATT	9 cut(s)	281, 659, 755, 1089, 1271, 1398, 1648, 1786, 1930
TatI	WGTACW	1 cut(s)	1054
TauI	GCSGC	2 cut(s)	47, 473
TfiI	GAWTC	1 cut(s)	195
Tru1I	TTAA	3 cut(s)	696, 1137, 1933
Tru9I	TTAA	3 cut(s)	696, 1137, 1933
TscAI	CASTG	4 cut(s)	304, 382, 620, 631
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	8 cut(s)	186, 233, 679, 962, 1022, 1344, 1879, 1882
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	8 cut(s)	416, 429, 602, 650, 679, 860, 879, 1022
TspGWI	ACGGA	3 cut(s)	1166, 1175, 1837
TspRI	CASTG	4 cut(s)	304, 382, 620, 631
Van91I	CCANNNNNTGG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	1170
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	3 cut(s)	659, 1648, 1786
XceI	RCATGY	8 cut(s)	9, 261, 679, 686, 1041, 1144, 1437, 1554
XmnI	GAANNNNTTC	3 cut(s)	870, 1074, 1829
XspI	CTAG	2 cut(s)	384, 498
ZraI	GACGTC	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	1056
Zsp2I	ATGCAT	3 cut(s)	1039, 1111, 1439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.