AT2G37120

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014464
Physical Location & Seq
Reverse (-)
15593964 .. 15594961
998 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G37120.1

Sequence Viewer

Length: 231 bp
ATGAGCAGTGATGGTTCCGCCGGAAAGGCGGTTGTTGAAGCCAAAGGATTGAACCCTGGATTGATAGTGCTGCTTGTTATTGGAGGTCTGCTTGTGACATTTCTCATAGCCAATTACGTTATGTACATGTATGCTCAGAAGAATCTACCTCCAAGGAAGAAGAAGCCTCTTTCCAAAAAGAAGCTCAAGCGTGAGAAGCTGAAGCAGGGAGTCCCTGTGCCCGGCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

76

Amino Acids

8.22

Weight (kDa)

10.17

Isoelectric Point (pI)

44.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1FA PF04689 13 - 76 8.3e-38 DNA binding protein S1FA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 18, 29
AcuI CTGAAG 1 cut(s) 221
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 2 cut(s) 38, 52
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 2 cut(s) 184, 199
AluI AGCT 2 cut(s) 184, 199
ApeKI GCWGC 1 cut(s) 70
AsuC2I CCSGG 1 cut(s) 222
BaeGI GKGCMC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 57
BccI CCATC 1 cut(s) 5
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 222
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
Bme1390I CCNGG 2 cut(s) 57, 222
BmiI GGNNCC 1 cut(s) 16
BmrFI CCNGG 2 cut(s) 57, 222
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 55, 152
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 55, 152
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 1 cut(s) 57
BsiSI CCGG 2 cut(s) 21, 222
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 197
Bsp1286I GDGCHC 1 cut(s) 222
Bsp1407I TGTACA 1 cut(s) 123
BspACI CCGC 2 cut(s) 18, 29
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 16
BsrGI TGTACA 1 cut(s) 123
BssECI CCNNGG 2 cut(s) 55, 152
BssT1I CCWWGG 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 57
BstAUI TGTACA 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 135
BstMWI GCNNNNNNNGC 2 cut(s) 26, 196
BstNI CCWGG 1 cut(s) 57
BstNSI RCATGY 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 55, 220
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 13
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 127
CviJI RGCY 5 cut(s) 41, 110, 166, 184, 199
CviKI_1 RGCY 5 cut(s) 41, 110, 166, 184, 199
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 135
EciI GGCGGA 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 55
EcoT14I CCWWGG 1 cut(s) 152
ErhI CCWWGG 1 cut(s) 152
FaeI CATG 1 cut(s) 130
FaiI YATR 4 cut(s) 107, 122, 128, 132
FaqI GGGAC 1 cut(s) 197
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 71
Fsp4HI GCNGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 71
HapII CCGG 2 cut(s) 21, 222
Hin1II CATG 1 cut(s) 130
HinfI GANTC 2 cut(s) 142, 210
HpaII CCGG 2 cut(s) 21, 222
Hpy188I TCNGA 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 117
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 196
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 1 cut(s) 130
LpnPI CCDG 4 cut(s) 34, 42, 69, 191
Lsp1109I GCAGC 1 cut(s) 57
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 1 cut(s) 94
MboII GAAGA 3 cut(s) 151, 169, 172
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 219
MnlI CCTC 3 cut(s) 77, 159, 177
MspI CCGG 2 cut(s) 21, 222
MspR9I CCNGG 2 cut(s) 57, 222
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 26, 196
NciI CCSGG 1 cut(s) 222
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 16
NmuCI GTSAC 1 cut(s) 94
NspI RCATGY 1 cut(s) 130
PciI ACATGT 1 cut(s) 126
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
PscI ACATGT 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 16
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 71
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 2 cut(s) 57, 222
SduI GDGCHC 1 cut(s) 222
SetI ASST 5 cut(s) 88, 120, 151, 186, 201
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 112
SsiI CCGC 2 cut(s) 18, 29
StyD4I CCNGG 2 cut(s) 55, 220
StyI CCWWGG 1 cut(s) 152
TaiI ACGT 1 cut(s) 120
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 142
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 94
TseI GCWGC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 94
TspRI CASTG 1 cut(s) 13
XceI RCATGY 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.