AT3G53370

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014464
Physical Location & Seq
Reverse (-)
19787852 .. 19788907
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53370.2

Sequence Viewer

Length: 231 bp
ATGGACGGCGAAGATTTTGCCGGAAAGGCGGCTGCTGAAGCCAAGGGATTGAACCCGGGATTAATCGTGCTGCTTGTTGTTGGAGGTCCGCTTCTTGTGTTCCTAATCGCCAACTACGTGCTTTACGTTTATGCTCAGAAGAACCTACCTCCAAGGAAGAAGAAGCCCGTTTCCAAAAAGAAGCTCAAGCGGGAGAAGCTAAAGCAAGGAGTCCCTGTCCCTGGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

76

Amino Acids

8.21

Weight (kDa)

9.94

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1FA PF04689 6 - 38 9.2e-16 DNA binding protein S1FA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 89, 190
AcuI CTGAAG 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 184, 199
AluI AGCT 2 cut(s) 184, 199
Ama87I CYCGRG 1 cut(s) 55
ApeKI GCWGC 2 cut(s) 32, 70
AseI ATTAAT 1 cut(s) 62
AspS9I GGNCC 1 cut(s) 86
AsuC2I CCSGG 2 cut(s) 56, 57
AvaI CYCGRG 1 cut(s) 55
AvaII GGWCC 1 cut(s) 86
BbvI GCAGC 2 cut(s) 19, 57
BceAI ACGGC 1 cut(s) 22
BcgI CGANNNNNNTGC 1 cut(s) 33
BciT130I CCWGG 1 cut(s) 222
BcnI CCSGG 2 cut(s) 56, 57
BglI GCCNNNNNGGC 1 cut(s) 26
BisI GCNGC 3 cut(s) 30, 33, 71
BlsI GCNGC 3 cut(s) 31, 34, 72
Bme1390I CCNGG 3 cut(s) 56, 57, 222
Bme18I GGWCC 1 cut(s) 86
BmeT110I CYCGRG 1 cut(s) 55
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 3 cut(s) 56, 57, 222
BpuEI CTTGAG 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 56, 57
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 4 cut(s) 42, 55, 152, 220
BsaXI ACNNNNNCTCC 2 cut(s) 201, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 4 cut(s) 42, 55, 152, 220
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 149
BseXI GCAGC 2 cut(s) 19, 57
BsiHKCI CYCGRG 1 cut(s) 55
BsiSI CCGG 2 cut(s) 21, 56
BslFI GGGAC 2 cut(s) 197, 203
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 2 cut(s) 197, 203
BsoBI CYCGRG 1 cut(s) 55
BspACI CCGC 3 cut(s) 29, 89, 190
BspCNI CTCAG 1 cut(s) 148
BssECI CCNNGG 4 cut(s) 42, 55, 152, 220
BssT1I CCWWGG 2 cut(s) 42, 152
Bst2UI CCWGG 1 cut(s) 222
BstBAI YACGTR 1 cut(s) 118
BstDEI CTNAG 1 cut(s) 135
BstMWI GCNNNNNNNGC 3 cut(s) 26, 38, 196
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 3 cut(s) 54, 55, 220
BstV1I GCAGC 2 cut(s) 19, 57
Cfr13I GGNCC 1 cut(s) 86
Cfr9I CCCGGG 1 cut(s) 55
CviJI RGCY 5 cut(s) 32, 41, 166, 184, 199
CviKI_1 RGCY 5 cut(s) 32, 41, 166, 184, 199
DdeI CTNAG 1 cut(s) 135
Eco130I CCWWGG 2 cut(s) 42, 152
Eco47I GGWCC 1 cut(s) 86
Eco57I CTGAAG 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 220
EcoT14I CCWWGG 2 cut(s) 42, 152
ErhI CCWWGG 2 cut(s) 42, 152
FaiI YATR 1 cut(s) 132
FaqI GGGAC 2 cut(s) 197, 203
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 3 cut(s) 30, 33, 71
Fsp4HI GCNGC 3 cut(s) 30, 33, 71
GluI GCNGC 3 cut(s) 30, 33, 71
HapII CCGG 2 cut(s) 21, 56
HinfI GANTC 1 cut(s) 210
HpaII CCGG 2 cut(s) 21, 56
Hpy188I TCNGA 1 cut(s) 138
HpyCH4IV ACGT 2 cut(s) 117, 126
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 38, 196
HpyF3I CTNAG 1 cut(s) 135
HpySE526I ACGT 2 cut(s) 117, 126
LpnPI CCDG 3 cut(s) 34, 69, 207
Lsp1109I GCAGC 2 cut(s) 19, 57
MaeII ACGT 2 cut(s) 117, 126
MboII GAAGA 4 cut(s) 23, 151, 169, 172
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 61
MnlI CCTC 2 cut(s) 77, 159
MseI TTAA 1 cut(s) 62
MspI CCGG 2 cut(s) 21, 56
MspR9I CCNGG 3 cut(s) 56, 57, 222
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 26, 38, 196
NciI CCSGG 2 cut(s) 56, 57
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 123
PkrI GCNGC 3 cut(s) 31, 34, 72
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Ppu21I YACGTR 1 cut(s) 118
PshBI ATTAAT 1 cut(s) 62
Psp6I CCWGG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 220
PspPI GGNCC 1 cut(s) 86
SaqAI TTAA 1 cut(s) 62
SatI GCNGC 3 cut(s) 30, 33, 71
Sau96I GGNCC 1 cut(s) 86
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 3 cut(s) 56, 57, 222
SetI ASST 7 cut(s) 88, 120, 129, 147, 151, 186, 201
SinI GGWCC 1 cut(s) 86
SmaI CCCGGG 1 cut(s) 57
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SsiI CCGC 3 cut(s) 29, 89, 190
StyD4I CCNGG 3 cut(s) 54, 55, 220
StyI CCWWGG 2 cut(s) 42, 152
TaiI ACGT 2 cut(s) 120, 129
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 62
Tru9I TTAA 1 cut(s) 62
TseI GCWGC 2 cut(s) 32, 70
TspMI CCCGGG 1 cut(s) 55
VpaK11BI GGWCC 1 cut(s) 86
VspI ATTAAT 1 cut(s) 62
XmaI CCCGGG 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.