Rroxscaffold_6G00412200

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014464
Physical Location & Seq
Forward (+)
34839950 .. 34841696
1747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00412200.1

Sequence Viewer

Length: 315 bp
ATGGCGGACGATTTCTCGGAAAAGGTCCCCCCTCTTTCGACGCCGCGGATGAGAGTGAGTTTGGATTTCGTCCCTGGCATGCCTGAGTTCTTCCTTTCAGCTGATTTGTTGGTTATGCAGGGGACAAAAGGGTTCAACCCTGGATTGATTGTGTTGCTTGTTGTTGTTGGGTTACTGGTGACTTTTCTTGTTGGAAACTATGCACTGTATGTGTATGCTCAGAGAACCATTCCTCCGAAAAAGAAGAAGCCGGTGTCCAAGAAGAAGCTGAAGAAGGAGAGGCTGAAGCAAGGCGTCTCTGCTCCAGGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

104

Amino Acids

11.48

Weight (kDa)

9.94

Isoelectric Point (pI)

21.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1FA PF04689 42 - 104 4.7e-37 DNA binding protein S1FA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 46
AciI CCGC 3 cut(s) 5, 44, 46
AcuI CTGAAG 2 cut(s) 290, 305
AcyI GRCGYC 2 cut(s) 41, 294
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 3 cut(s) 73, 139, 304
AloI GAACNNNNNNTCC 2 cut(s) 217, 249
AluBI AGCT 2 cut(s) 101, 268
AluI AGCT 2 cut(s) 101, 268
Alw26I GTCTC 1 cut(s) 301
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 25
BciT130I CCWGG 3 cut(s) 75, 141, 306
BcoDI GTCTC 1 cut(s) 301
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 3 cut(s) 75, 141, 306
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 3 cut(s) 75, 141, 306
BpmI CTGGAG 1 cut(s) 288
BsaHI GRCGYC 2 cut(s) 41, 294
BsaJI CCNNGG 4 cut(s) 44, 73, 139, 305
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 180
BseBI CCWGG 3 cut(s) 75, 141, 306
BseDI CCNNGG 4 cut(s) 44, 73, 139, 305
BseGI GGATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 75, 233
BseNI ACTGG 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 3 cut(s) 11, 56, 136
BsmAI GTCTC 1 cut(s) 301
BsmBI CGTCTC 1 cut(s) 301
BsmFI GGGAC 3 cut(s) 11, 56, 136
BspACI CCGC 3 cut(s) 5, 44, 46
BspCNI CTCAG 2 cut(s) 76, 232
BspFNI CGCG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 4 cut(s) 44, 73, 139, 305
BssNI GRCGYC 2 cut(s) 41, 294
Bst2UI CCWGG 3 cut(s) 75, 141, 306
Bst4CI ACNGT 1 cut(s) 207
BstACI GRCGYC 2 cut(s) 41, 294
BstC8I GCNNGC 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 84, 219
BstDSI CCRYGG 1 cut(s) 44
BstF5I GGATG 1 cut(s) 54
BstFNI CGCG 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 301
BstNI CCWGG 3 cut(s) 75, 141, 306
BstNSI RCATGY 1 cut(s) 82
BstSCI CCNGG 3 cut(s) 73, 139, 304
BstUI CGCG 1 cut(s) 46
BtgI CCRYGG 1 cut(s) 44
BtsCI GGATG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 25
Cfr42I CCGCGG 1 cut(s) 47
CseI GACGC 2 cut(s) 49, 283
CviAII CATG 1 cut(s) 79
CviJI RGCY 4 cut(s) 101, 250, 268, 283
CviKI_1 RGCY 4 cut(s) 101, 250, 268, 283
DdeI CTNAG 2 cut(s) 84, 219
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 290, 305
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 73, 139, 304
Esp3I CGTCTC 1 cut(s) 301
FaeI CATG 1 cut(s) 82
FaiI YATR 5 cut(s) 80, 116, 201, 210, 216
FaqI GGGAC 3 cut(s) 11, 56, 136
FatI CATG 1 cut(s) 78
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 1 cut(s) 61
Fsp4HI GCNGC 1 cut(s) 44
GluI GCNGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 288
HapII CCGG 1 cut(s) 251
HgaI GACGC 2 cut(s) 49, 283
Hin1I GRCGYC 2 cut(s) 41, 294
Hin1II CATG 1 cut(s) 82
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 19, 222, 237
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 118, 203
HpyF3I CTNAG 2 cut(s) 84, 219
Hsp92I GRCGYC 2 cut(s) 41, 294
Hsp92II CATG 1 cut(s) 82
KspI CCGCGG 1 cut(s) 47
LmnI GCTCC 1 cut(s) 307
LpnPI CCDG 9 cut(s) 60, 87, 96, 104, 126, 153, 161, 264, 291
MaeIII GTNAC 2 cut(s) 171, 178
MboII GAAGA 4 cut(s) 82, 256, 274, 283
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 3 cut(s) 42, 243, 273
MspA1I CMGCKG 2 cut(s) 46, 101
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 3 cut(s) 75, 141, 306
MvaI CCWGG 3 cut(s) 75, 141, 306
MvnI CGCG 1 cut(s) 46
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 1 cut(s) 82
PaeI GCATGC 1 cut(s) 82
PkrI GCNGC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 3 cut(s) 73, 139, 304
PspGI CCWGG 3 cut(s) 73, 139, 304
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 101
SacII CCGCGG 1 cut(s) 47
SatI GCNGC 1 cut(s) 44
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 75, 141, 306
SetI ASST 3 cut(s) 27, 103, 270
Sfr303I CCGCGG 1 cut(s) 47
SgrBI CCGCGG 1 cut(s) 47
SinI GGWCC 1 cut(s) 25
SphI GCATGC 1 cut(s) 82
SsiI CCGC 3 cut(s) 5, 44, 46
StyD4I CCNGG 3 cut(s) 73, 139, 304
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 1 cut(s) 38
TauI GCSGC 1 cut(s) 46
TscAI CASTG 1 cut(s) 210
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 25
XceI RCATGY 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.