Rh3AG148800

DNA binding protein S1FA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0014464
Physical Location & Seq
Reverse (-)
13110044 .. 13113295
3252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG148800.1

Sequence Viewer

Length: 243 bp
ATGGCGGACGACTTCTCGGACAAGGTCCCTCCCTCTTTCGACGCCGCGGGGACAAAAGGGTTCAACCCTGGATTGATTGTTTTGCTTGTTGTTGTTGGGTTACTGGTGACTTTTCTTGTTGGAAACTATGCACTTTATGTGTATGCTCAGAGAACTATTCCTCCAAAAAAGAAGAAGCCGGTGTCCAAGAAGAAGCTGAAGAAGGAGAGGCTGAAGCAAGGTGTCTCTGCTCCAGGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

80

Amino Acids

8.67

Weight (kDa)

9.94

Isoelectric Point (pI)

19.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1FA PF04689 18 - 80 1.2e-37 DNA binding protein S1FA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 47
AciI CCGC 3 cut(s) 5, 45, 47
AcuI CTGAAG 2 cut(s) 218, 233
AcyI GRCGYC 1 cut(s) 42
AgsI TTSAA 1 cut(s) 64
AjnI CCWGG 2 cut(s) 67, 232
AloI GAACNNNNNNTCC 2 cut(s) 145, 177
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw26I GTCTC 1 cut(s) 229
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 118
AvaII GGWCC 1 cut(s) 25
BciT130I CCWGG 2 cut(s) 69, 234
BcoDI GTCTC 1 cut(s) 229
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 2 cut(s) 69, 234
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 69, 234
BpmI CTGGAG 1 cut(s) 216
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 45, 67, 233
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse118I RCCGGY 1 cut(s) 178
Bse1I ACTGG 1 cut(s) 108
BseBI CCWGG 2 cut(s) 69, 234
BseDI CCNNGG 3 cut(s) 45, 67, 233
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 108
Bsh1236I CGCG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 2 cut(s) 11, 64
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 2 cut(s) 11, 64
BspACI CCGC 3 cut(s) 5, 45, 47
BspCNI CTCAG 1 cut(s) 160
BspFNI CGCG 1 cut(s) 47
BspLI GGNNCC 1 cut(s) 27
BsrFI RCCGGY 1 cut(s) 178
BsrI ACTGG 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 178
BssECI CCNNGG 3 cut(s) 45, 67, 233
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 2 cut(s) 69, 234
BstACI GRCGYC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 147
BstDSI CCRYGG 1 cut(s) 45
BstFNI CGCG 1 cut(s) 47
BstMAI GTCTC 1 cut(s) 229
BstNI CCWGG 2 cut(s) 69, 234
BstSCI CCNGG 2 cut(s) 67, 232
BstUI CGCG 1 cut(s) 47
BtgI CCRYGG 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 1 cut(s) 25
Cfr42I CCGCGG 1 cut(s) 48
CseI GACGC 1 cut(s) 50
CviJI RGCY 3 cut(s) 178, 196, 211
CviKI_1 RGCY 3 cut(s) 178, 196, 211
DdeI CTNAG 1 cut(s) 147
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 2 cut(s) 218, 233
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 2 cut(s) 67, 232
FaiI YATR 3 cut(s) 129, 138, 144
FaqI GGGAC 2 cut(s) 11, 64
FauI CCCGC 1 cut(s) 40
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
GsuI CTGGAG 1 cut(s) 216
HapII CCGG 1 cut(s) 179
HgaI GACGC 1 cut(s) 50
Hin1I GRCGYC 1 cut(s) 42
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 19, 150
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 196
HpyCH4V TGCA 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 42
KspI CCGCGG 1 cut(s) 48
LmnI GCTCC 1 cut(s) 235
LpnPI CCDG 5 cut(s) 54, 81, 89, 192, 219
MaeIII GTNAC 2 cut(s) 99, 106
MboII GAAGA 3 cut(s) 184, 202, 211
MmeI TCCRAC 1 cut(s) 100
MnlI CCTC 4 cut(s) 39, 43, 171, 201
MspA1I CMGCKG 1 cut(s) 47
MspI CCGG 1 cut(s) 179
MspR9I CCNGG 2 cut(s) 69, 234
MvaI CCWGG 2 cut(s) 69, 234
MvnI CGCG 1 cut(s) 47
NlaIV GGNNCC 1 cut(s) 27
NmuCI GTSAC 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 23
PkrI GCNGC 1 cut(s) 46
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 2 cut(s) 67, 232
PspGI CCWGG 2 cut(s) 67, 232
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 23
SacII CCGCGG 1 cut(s) 48
SatI GCNGC 1 cut(s) 45
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 69, 234
SetI ASST 3 cut(s) 27, 198, 223
Sfr303I CCGCGG 1 cut(s) 48
SgrBI CCGCGG 1 cut(s) 48
SinI GGWCC 1 cut(s) 25
SsiI CCGC 3 cut(s) 5, 45, 47
StyD4I CCNGG 2 cut(s) 67, 232
TaqI TCGA 1 cut(s) 39
TauI GCSGC 1 cut(s) 47
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.