MD12G1121800.v1.1

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0014464
Physical Location & Seq
Forward (+)
19565681 .. 19568129
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1121800.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGCTGACCAGTTCGAGGACAAGGTCCCTCCTTCGGATGCAAAAGGGTTTAACCCTGGATTGATAGTGTTGATTGTTGTTGTTGGGCTGCTGCTGCTTTTCTTGGTTGGAAACTATGCGCTTTACGTGTATGCTCAGAGAACTCTTCCCCCGAAGAAGAAGAAGCCAGTGTCTAAGAAGAAGCTGAAAAAGGAGAGGCTGAAGCAAGGCGTCTCTGCTCCGGGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

9.94

Isoelectric Point (pI)

23.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1FA PF04689 13 - 76 2.8e-39 DNA binding protein S1FA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 16, 34
AflIII ACRYGT 1 cut(s) 126
AjnI CCWGG 1 cut(s) 55
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 217
ApeKI GCWGC 3 cut(s) 88, 91, 94
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 222
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 3 cut(s) 75, 78, 81
BciT130I CCWGG 1 cut(s) 57
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 217
BisI GCNGC 3 cut(s) 89, 92, 95
BlsI GCNGC 3 cut(s) 90, 93, 96
Bme1390I CCNGG 2 cut(s) 57, 222
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 2 cut(s) 57, 222
BmsI GCATC 1 cut(s) 28
BpuMI CCSGG 1 cut(s) 222
BsaAI YACGTR 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 34
Bse1I ACTGG 2 cut(s) 10, 167
BseBI CCWGG 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 16, 34
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 10, 167
BseXI GCAGC 3 cut(s) 75, 78, 81
BsiSI CCGG 1 cut(s) 221
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 16, 34
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 27
BsrI ACTGG 2 cut(s) 10, 167
BssECI CCNNGG 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 135, 174
BstF5I GGATG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 55, 220
BstV1I GCAGC 3 cut(s) 75, 78, 81
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 174
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 199
CviJI RGCY 5 cut(s) 5, 88, 166, 184, 199
CviKI_1 RGCY 5 cut(s) 5, 88, 166, 184, 199
DdeI CTNAG 2 cut(s) 135, 174
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 217
FaiI YATR 2 cut(s) 117, 132
FaqI GGGAC 1 cut(s) 11
Fnu4HI GCNGC 3 cut(s) 89, 92, 95
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 3 cut(s) 89, 92, 95
GlaI GCGC 1 cut(s) 120
GluI GCNGC 3 cut(s) 89, 92, 95
HapII CCGG 1 cut(s) 221
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HpaII CCGG 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 37, 138
HpyAV CCTTC 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 2 cut(s) 135, 174
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 4 cut(s) 23, 42, 69, 180
Lsp1109I GCAGC 3 cut(s) 75, 78, 81
LweI GCATC 1 cut(s) 28
MaeII ACGT 1 cut(s) 126
MboII GAAGA 5 cut(s) 137, 166, 169, 172, 190
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 3 cut(s) 10, 39, 189
MseI TTAA 1 cut(s) 51
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 2 cut(s) 57, 222
MvaI CCWGG 1 cut(s) 57
MwoI GCNNNNNNNGC 1 cut(s) 94
NciI CCSGG 1 cut(s) 222
NlaIV GGNNCC 1 cut(s) 27
PflFI GACNNNGTC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 3 cut(s) 90, 93, 96
Ppu21I YACGTR 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 23
SaqAI TTAA 1 cut(s) 51
SatI GCNGC 3 cut(s) 89, 92, 95
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 57, 222
SetI ASST 3 cut(s) 27, 129, 186
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 25
StyD4I CCNGG 2 cut(s) 55, 220
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 15
Tru1I TTAA 1 cut(s) 51
Tru9I TTAA 1 cut(s) 51
TscAI CASTG 1 cut(s) 174
TseI GCWGC 3 cut(s) 88, 91, 94
TspRI CASTG 1 cut(s) 174
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.