MD04G1102100.v1.1

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014464
Physical Location & Seq
Forward (+)
18873205 .. 18876355
3151 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1102100.v1.1.491

Sequence Viewer

Length: 231 bp
ATGGCTGACCAGTTCGAGGACAAGGTCCCTCCTTCGGATGCAAAAGGGTTGAACCCTGGAATGATAGTGTTGATTGTTGTTGTTGGGCTGCTGATGATTTTCCTGGTAGGAAACTACGCGCTTTACGTGTACGCTCAGAGAACTCTTCCCCCGAAGAAGAAGAAGCCAGTGTCTAAGAAGAAGCTGAAAAAGGAGAGGCTGAAGCAAGGCGTCTCTGCTCCAGGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

77

Amino Acids

8.38

Weight (kDa)

9.94

Isoelectric Point (pI)

23.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1FA PF04689 13 - 76 4.9e-39 DNA binding protein S1FA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 221
AcyI GRCGYC 1 cut(s) 210
AfaI GTAC 1 cut(s) 131
AfiI CCNNNNNNNGG 2 cut(s) 16, 34
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 3 cut(s) 55, 102, 220
AluBI AGCT 1 cut(s) 184
AluI AGCT 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 217
ApeKI GCWGC 1 cut(s) 88
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 25
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 75
BciT130I CCWGG 3 cut(s) 57, 104, 222
BcoDI GTCTC 1 cut(s) 217
BisI GCNGC 1 cut(s) 89
BlsI GCNGC 1 cut(s) 90
Bme1390I CCNGG 3 cut(s) 57, 104, 222
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 3 cut(s) 57, 104, 222
BmsI GCATC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 34
Bse1I ACTGG 2 cut(s) 10, 167
BseBI CCWGG 3 cut(s) 57, 104, 222
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 16, 34
BseMII CTCAG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 10, 167
BseXI GCAGC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 16, 34
BsmAI GTCTC 1 cut(s) 217
BsmBI CGTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 11
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 1 cut(s) 27
BsrI ACTGG 2 cut(s) 10, 167
BssECI CCNNGG 1 cut(s) 55
BssNI GRCGYC 1 cut(s) 210
Bst2UI CCWGG 3 cut(s) 57, 104, 222
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 210
BstBAI YACGTR 1 cut(s) 127
BstDEI CTNAG 2 cut(s) 135, 174
BstF5I GGATG 1 cut(s) 43
BstFNI CGCG 1 cut(s) 119
BstHHI GCGC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 217
BstNI CCWGG 3 cut(s) 57, 104, 222
BstSCI CCNGG 3 cut(s) 55, 102, 220
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 75
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 174
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 25
CseI GACGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 130
CviJI RGCY 5 cut(s) 5, 88, 166, 184, 199
CviKI_1 RGCY 5 cut(s) 5, 88, 166, 184, 199
CviQI GTAC 1 cut(s) 130
DdeI CTNAG 2 cut(s) 135, 174
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 3 cut(s) 55, 102, 220
Esp3I CGTCTC 1 cut(s) 217
FaqI GGGAC 1 cut(s) 11
Fnu4HI GCNGC 1 cut(s) 89
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 89
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 89
GsuI CTGGAG 1 cut(s) 204
HgaI GACGC 1 cut(s) 199
HhaI GCGC 1 cut(s) 121
Hin1I GRCGYC 1 cut(s) 210
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
Hpy166II GTNNAC 1 cut(s) 130
Hpy188I TCNGA 2 cut(s) 37, 138
Hpy8I GTNNAC 1 cut(s) 130
HpyAV CCTTC 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 135, 174
HpySE526I ACGT 1 cut(s) 126
Hsp92I GRCGYC 1 cut(s) 210
HspAI GCGC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 7 cut(s) 23, 42, 69, 89, 116, 180, 207
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 28
MaeII ACGT 1 cut(s) 126
MboII GAAGA 5 cut(s) 137, 166, 169, 172, 190
MnlI CCTC 3 cut(s) 10, 39, 189
MspR9I CCNGG 3 cut(s) 57, 104, 222
MvaI CCWGG 3 cut(s) 57, 104, 222
MvnI CGCG 1 cut(s) 119
NlaIV GGNNCC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 23
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 1 cut(s) 90
Ppu21I YACGTR 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 25
Psp5II RGGWCCY 1 cut(s) 25
Psp6I CCWGG 3 cut(s) 55, 102, 220
PspGI CCWGG 3 cut(s) 55, 102, 220
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 25
PspPPI RGGWCCY 1 cut(s) 25
PsyI GACNNNGTC 1 cut(s) 23
RsaI GTAC 1 cut(s) 131
RsaNI GTAC 1 cut(s) 130
SatI GCNGC 1 cut(s) 89
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 3 cut(s) 57, 104, 222
SetI ASST 3 cut(s) 27, 129, 186
SfaNI GCATC 1 cut(s) 28
SinI GGWCC 1 cut(s) 25
StyD4I CCNGG 3 cut(s) 55, 102, 220
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 15
TscAI CASTG 1 cut(s) 174
TseI GCWGC 1 cut(s) 88
TspRI CASTG 1 cut(s) 174
Tth111I GACNNNGTC 1 cut(s) 23
VpaK11BI GGWCC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.