AT3G09735

DNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014464
Physical Location & Seq
Reverse (-)
2986398 .. 2987990
1593 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G09735.1

Sequence Viewer

Length: 222 bp
ATGGCCGCAGAATTTGATGGAAAAATCGAAAGCAAAGGGCTAAACCCGGGACTGATCGTCCTTCTTGTAATAGGAGGGTTGCTACTGACATTCCTTGTAGGAAACTTCATCCTTTACACATACGCACAGAAGAATTTACCTCCGAGGAAGAAGAAACCCGTTTCTAAGAAGAAGATGAAGAAAGAGAAGATGAAGCAAGGCGTCCAAGTTCCTGGCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

73

Amino Acids

8.07

Weight (kDa)

10.06

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S1FA PF04689 9 - 73 2.1e-40 DNA binding protein S1FA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 11, 133
AcyI GRCGYC 1 cut(s) 201
AhdI GACNNNNNGTC 1 cut(s) 56
AjnI CCWGG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 11, 133
AsuC2I CCSGG 2 cut(s) 47, 48
AvaI CYCGRG 1 cut(s) 46
BccI CCATC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 213
BcnI CCSGG 2 cut(s) 47, 48
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 3 cut(s) 47, 48, 213
BmeRI GACNNNNNGTC 1 cut(s) 56
BmeT110I CYCGRG 1 cut(s) 46
BmrFI CCNGG 3 cut(s) 47, 48, 213
BpuMI CCSGG 2 cut(s) 47, 48
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 46, 143
BseBI CCWGG 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 46, 143
BseGI GGATG 1 cut(s) 108
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 1 cut(s) 47
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 46
Bsp143I GATC 1 cut(s) 54
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BssECI CCNNGG 2 cut(s) 46, 143
BssMI GATC 1 cut(s) 54
BssNI GRCGYC 1 cut(s) 201
Bst2UI CCWGG 1 cut(s) 213
BstACI GRCGYC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 108
BstKTI GATC 1 cut(s) 57
BstMBI GATC 1 cut(s) 54
BstNI CCWGG 1 cut(s) 213
BstSCI CCNGG 3 cut(s) 45, 46, 211
BstXI CCANNNNNNTGG 1 cut(s) 212
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 108
Cfr9I CCCGGG 1 cut(s) 46
CseI GACGC 1 cut(s) 190
CviJI RGCY 2 cut(s) 5, 40
CviKI_1 RGCY 2 cut(s) 5, 40
DdeI CTNAG 1 cut(s) 165
DpnI GATC 1 cut(s) 56
DpnII GATC 1 cut(s) 54
DriI GACNNNNNGTC 1 cut(s) 56
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 56
Eco88I CYCGRG 1 cut(s) 46
EcoRII CCWGG 1 cut(s) 211
FaiI YATR 1 cut(s) 121
FaqI GGGAC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 47
HgaI GACGC 1 cut(s) 190
Hin1I GRCGYC 1 cut(s) 201
HpaII CCGG 1 cut(s) 47
Hpy188I TCNGA 1 cut(s) 144
HpyAV CCTTC 1 cut(s) 71
HpyF3I CTNAG 1 cut(s) 165
Hsp92I GRCGYC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 54
LpnPI CCDG 2 cut(s) 60, 198
MalI GATC 1 cut(s) 56
MboI GATC 1 cut(s) 54
MboII GAAGA 7 cut(s) 142, 160, 163, 181, 184, 190, 199
MluCI AATT 2 cut(s) 11, 133
MnlI CCTC 3 cut(s) 68, 138, 150
MspI CCGG 1 cut(s) 47
MspR9I CCNGG 3 cut(s) 47, 48, 213
MvaI CCWGG 1 cut(s) 213
NciI CCSGG 2 cut(s) 47, 48
NdeII GATC 1 cut(s) 54
PkrI GCNGC 1 cut(s) 7
Psp6I CCWGG 1 cut(s) 211
PspGI CCWGG 1 cut(s) 211
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 1 cut(s) 54
ScrFI CCNGG 3 cut(s) 47, 48, 213
SetI ASST 1 cut(s) 142
SgeI CNNG 9 cut(s) 58, 59, 60, 77, 107, 156, 170, 209, 218
SmaI CCCGGG 1 cut(s) 48
Sse9I AATT 2 cut(s) 11, 133
SsiI CCGC 1 cut(s) 6
StyD4I CCNGG 3 cut(s) 45, 46, 211
TaqI TCGA 1 cut(s) 27
TasI AATT 2 cut(s) 11, 133
TauI GCSGC 1 cut(s) 8
TspDTI ATGAA 3 cut(s) 97, 191, 206
TspMI CCCGGG 1 cut(s) 46
XapI RAATTY 2 cut(s) 11, 133
XmaI CCCGGG 1 cut(s) 46
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.