Rorug03G0099800

DNA binding protein S1FA

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014464
Physical Location & Seq
Reverse (-)
7830848 .. 7831316
469 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0099800.1

Sequence Viewer

Length: 354 bp
ATGGCTAGCTCTAACGCTATGAAGCTTGCTTTGGTTGCTCTCTTGTGCGTGGTGGTTGCTTTGCCCATAGCCCAAGCCATCACATGCGGCCAAGTGGCGAGCAATGTTGCACCTTGCACAACCTACGTGAAGAGTGGCGGCGCTGTCCCTGCCACTTGCTGCAACGGAGTTAGAAACCTTAACGCCATGGCCAAGACCACCTCTGACCGCCAGGCCGTCTGCAATTGCCTCAAACAGGTTGCCGGTGCCATCAAAGGACTCAACCCTAACCTTGCAGCTGGGCTTCCCGGCAAGTGTGGAGTTAGCGTTCCCTTCAAGATCAGCACCTCCACCAACTGCGCCACGGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
S1FA

Protein Analysis

117

Amino Acids

11.67

Weight (kDa)

9.37

Isoelectric Point (pI)

21.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 19 - 105 1.8e-06 Probable lipid transfer
Tryp_alpha_amyl PF00234 29 - 113 1.8e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014464)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37120 AT3G09735 AT3G53370 AT3G53370
fragaria_vesca FvH4_6g15550
malus_domestica MD04G1102100.v1.1 MD12G1121800.v1.1
prunus_persica Prupe.6G239600_v2.0.a1
pyrus_communis pycom04g09740 pycom12g12090
rosa_chinensis RchiOBHm_Chr3g0469111
rosa_multiflora Rmu_sc0000302.1_g000015 Rmu_sc0007933.1_g000019
rosa_roxburghii Rroxscaffold_6G00412200
rosa_rugosa Rorug03G0099800
rosa_samantha Rh3AG148800
rosa_wichuraiana Rw3G014040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AciI CCGC 3 cut(s) 87, 138, 208
AcoI YGGCCR 2 cut(s) 88, 189
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 1 cut(s) 316
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 14, 46
AloI GAACNNNNNNTCC 2 cut(s) 291, 323
AluBI AGCT 3 cut(s) 9, 25, 278
AluI AGCT 3 cut(s) 9, 25, 278
AoxI GGCC 3 cut(s) 88, 189, 213
ApeKI GCWGC 2 cut(s) 159, 275
AspLEI GCGC 2 cut(s) 143, 341
AsuC2I CCSGG 1 cut(s) 288
AsuNHI GCTAGC 1 cut(s) 5
BalI TGGCCA 1 cut(s) 191
BanI GGYRCC 1 cut(s) 245
BbvI GCAGC 2 cut(s) 146, 287
BccI CCATC 2 cut(s) 86, 257
BceAI ACGGC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 212
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 144
BisI GCNGC 4 cut(s) 88, 139, 160, 276
BlsI GCNGC 4 cut(s) 89, 140, 161, 277
Bme1390I CCNGG 2 cut(s) 212, 288
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 2 cut(s) 212, 288
BmtI GCTAGC 1 cut(s) 9
BpuMI CCSGG 1 cut(s) 288
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 2 cut(s) 186, 342
BsaXI ACNNNNNCTCC 2 cut(s) 291, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse118I RCCGGY 1 cut(s) 242
Bse3DI GCAATG 1 cut(s) 109
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 186, 342
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 146, 287
BseYI CCCAGC 1 cut(s) 278
BshFI GGCC 3 cut(s) 90, 191, 215
BshNI GGYRCC 1 cut(s) 245
BsiSI CCGG 2 cut(s) 243, 288
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 235
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 3 cut(s) 90, 191, 215
Bsp143I GATC 1 cut(s) 318
Bsp19I CCATGG 1 cut(s) 186
BspACI CCGC 3 cut(s) 87, 138, 208
BspANI GGCC 3 cut(s) 90, 191, 215
BspLI GGNNCC 1 cut(s) 247
BspOI GCTAGC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 242
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 186, 342
BssMI GATC 1 cut(s) 318
BssT1I CCWWGG 1 cut(s) 186
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 346
Bst6I CTCTTC 1 cut(s) 125
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 3 cut(s) 7, 27, 100
BstDSI CCRYGG 2 cut(s) 186, 342
BstENI CCTNNNNNAGG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 341
BstKTI GATC 1 cut(s) 321
BstMBI GATC 1 cut(s) 318
BstMWI GCNNNNNNNGC 2 cut(s) 35, 149
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 87
BstSCI CCNGG 2 cut(s) 210, 286
BstV1I GCAGC 2 cut(s) 146, 287
BsuRI GGCC 3 cut(s) 90, 191, 215
BtgI CCRYGG 2 cut(s) 186, 342
Cac8I GCNNGC 3 cut(s) 7, 27, 100
CfoI GCGC 2 cut(s) 143, 341
Cfr10I RCCGGY 1 cut(s) 242
CviAII CATG 2 cut(s) 84, 187
DpnI GATC 1 cut(s) 320
DpnII GATC 1 cut(s) 318
EaeI YGGCCR 2 cut(s) 88, 189
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco130I CCWWGG 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 2 cut(s) 87, 190
FaiI YATR 4 cut(s) 20, 68, 85, 188
FaqI GGGAC 1 cut(s) 131
FatI CATG 2 cut(s) 83, 186
Fnu4HI GCNGC 4 cut(s) 88, 139, 160, 276
Fsp4HI GCNGC 4 cut(s) 88, 139, 160, 276
FspBI CTAG 1 cut(s) 6
GlaI GCGC 2 cut(s) 142, 340
GluI GCNGC 4 cut(s) 88, 139, 160, 276
GsaI CCCAGC 1 cut(s) 282
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 3 cut(s) 90, 191, 215
HapII CCGG 2 cut(s) 243, 288
HhaI GCGC 2 cut(s) 143, 341
Hin1II CATG 2 cut(s) 87, 190
Hin6I GCGC 2 cut(s) 141, 339
HinP1I GCGC 2 cut(s) 141, 339
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 1 cut(s) 258
HpaII CCGG 2 cut(s) 243, 288
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 322
HpyCH4III ACNGT 1 cut(s) 346
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 5 cut(s) 110, 117, 162, 222, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 149
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 2 cut(s) 87, 190
HspAI GCGC 2 cut(s) 141, 339
Kzo9I GATC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 162, 197, 221, 224, 256, 264, 301
Lsp1109I GCAGC 2 cut(s) 146, 287
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 126
MalI GATC 1 cut(s) 320
MboI GATC 1 cut(s) 318
MboII GAAGA 1 cut(s) 142
MfeI CAATTG 1 cut(s) 223
MlsI TGGCCA 1 cut(s) 191
MluCI AATT 1 cut(s) 223
MluNI TGGCCA 1 cut(s) 191
MlyI GAGTC 1 cut(s) 252
MnlI CCTC 3 cut(s) 211, 239, 337
Mox20I TGGCCA 1 cut(s) 191
MscI TGGCCA 1 cut(s) 191
MseI TTAA 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 191
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 243, 288
MspR9I CCNGG 2 cut(s) 212, 288
MunI CAATTG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 2 cut(s) 35, 149
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 186
NdeII GATC 1 cut(s) 318
NheI GCTAGC 1 cut(s) 5
NlaIII CATG 2 cut(s) 87, 190
NlaIV GGNNCC 1 cut(s) 247
NspI RCATGY 1 cut(s) 87
PkrI GCNGC 4 cut(s) 89, 140, 161, 277
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 247
PvuII CAGCTG 1 cut(s) 278
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 4 cut(s) 88, 139, 160, 276
Sau3AI GATC 1 cut(s) 318
SchI GAGTC 1 cut(s) 252
ScrFI CCNGG 2 cut(s) 212, 288
Sse9I AATT 1 cut(s) 223
SsiI CCGC 3 cut(s) 87, 138, 208
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 2 cut(s) 210, 286
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 346
TaiI ACGT 1 cut(s) 129
TasI AATT 1 cut(s) 223
TauI GCSGC 2 cut(s) 90, 141
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TseI GCWGC 2 cut(s) 159, 275
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 180
XagI CCTNNNNNAGG 1 cut(s) 233
XceI RCATGY 1 cut(s) 87
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.