Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011693

Physical Location & Seq

Genomic Coordinates Forward (+)

15769086 .. 15770805

Gene Structure 1720 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGTTTTCTCCTCCATCCAAGCCTATCTTGATTCATCCAACTGGCAACAGGCTCCTCCGAGCAATTATAATCATGACGGAACAGGCGCCTCAGCAAATGGAGGTCATGTTCTTCGTCCTCAGCTGCAGCCACAGCAGCAGCCACAGCAGCAGCCGCATCCTAATGGGAGCGGGGGCGGAGGTGGAGGTGGAGGCGGCTCGATCCGAGCAGGATCAATGGTGGACAGAGCAAGACAAGCAAACGTAGCCTTGCCAGAAGCAGCACTGAAATGTCCGAGATGCGAATCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCACTCAACCACGCCACTTCTGCAAGACCTGCCGGAGATACTGGACACGTGGCGGAGCTCTCCGCAACGTCCCAGTCGGCGGTGGCTGCCGGAGAAACAGGCGTACCAAAAGCAACAGCAACAACAACAATAACAGCACTGCTACTAGCAATAACACCAGTTTCTCCTCCGGGAATGCATCCACCATCAGCACGATTCTCTCCTCCCACTATGGAGGAAACCAAGAGAGTATCTTAAGCCAGATTTTGTCTCCGGCGAGGCTAATGAATCCTACTTACAATCATCTCGGAGATCTCACAAGTAATACAAAAACAGACAACAACATGAGCTTGTTGAACTATGGAGGATTGAGTCAAGACTTGAGGTCAATCCACATGGGAGCTTCTGGTGGCTCGCTTATGAGCTGTGTTGATGAATGGAGATCGGCGTCTTATCATCAGCAGTCAAGTATGGGCGGTGGGAACTTGGAGGATTCTTCTAATCCTAATCCATCCGCAAATGGGTTTTACTCTTTTGAGTCGCCGAGGATAACTTCAGCGTCAATCTCTTCTGCTTTAGCATCGCAGTTTTCTTCGGTTAAAGTTGAAGATAATCCTTACAAATGGGTTAATGTCAATGGTAATTGCTCTTCCTGGAATGATCTTTCTGCTTTCGGCTCTTCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-Dof

Protein Analysis

330

Amino Acids

35.33

Weight (kDa)

9.26

Isoelectric Point (pI)

56.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zn_ribbon_Dof	PF02701	88 - 143	2.9e-32	Dof domain, zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011693)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37590
fragaria_vesca	FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica	MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica	Prupe.6G079500_v2.0.a1
pyrus_communis	pycom03g07900 pycom11g09190
rosa_chinensis	RchiOBHm_Chr5g0063971
rosa_laevigata	RLG00000035695
rosa_roxburghii	Rroxscaffold_1G00016830
rosa_rugosa	Rorug05G0361400 Rorug05G0361400
rosa_samantha	Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana	Rw5G039460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	69
Acc36I	ACCTGC	1 cut(s)	362
AccB1I	GGYRCC	1 cut(s)	86
AccBSI	CCGCTC	1 cut(s)	171
AciI	CCGC	9 cut(s)	155, 171, 177, 195, 378, 388, 405, 780, 819
AclWI	GGATC	2 cut(s)	196, 220
AcuI	CTGAAG	1 cut(s)	843
AcvI	CACGTG	1 cut(s)	374
AcyI	GRCGYC	2 cut(s)	87, 752
AfaI	GTAC	1 cut(s)	430
AfiI	CCNNNNNNNGG	2 cut(s)	404, 825
AflII	CTTAAG	1 cut(s)	559
AflIII	ACRYGT	1 cut(s)	371
AgsI	TTSAA	3 cut(s)	313, 661, 911
AhdI	GACNNNNNGTC	1 cut(s)	688
AjnI	CCWGG	1 cut(s)	956
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	5 cut(s)	124, 383, 654, 707, 729
AluI	AGCT	5 cut(s)	124, 383, 654, 707, 729
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	1 cut(s)	579
AlwI	GGATC	2 cut(s)	196, 220
ApeKI	GCWGC	8 cut(s)	124, 127, 136, 139, 148, 151, 260, 411
AspLEI	GCGC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	496
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BanI	GGYRCC	1 cut(s)	86
BanII	GRGCYC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	937, 969
BbrPI	CACGTG	1 cut(s)	374
Bbv12I	GWGCWC	1 cut(s)	385
BbvCI	CCTCAGC	2 cut(s)	91, 120
BbvI	GCAGC	8 cut(s)	111, 139, 148, 151, 160, 163, 272, 398
BccI	CCATC	3 cut(s)	23, 518, 823
BciT130I	CCWGG	1 cut(s)	958
BcnI	CCSGG	1 cut(s)	496
BcoDI	GTCTC	1 cut(s)	579
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	2 cut(s)	125, 319
BfoI	RGCGCY	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	559
BfuAI	ACCTGC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	616
Bme1390I	CCNGG	2 cut(s)	496, 958
BmeRI	GACNNNNNGTC	1 cut(s)	688
BmiI	GGNNCC	2 cut(s)	54, 88
BmrFI	CCNGG	2 cut(s)	496, 958
BmrI	ACTGGG	1 cut(s)	392
BmsI	GCATC	4 cut(s)	166, 269, 512, 893
BmuI	ACTGGG	1 cut(s)	392
Bpu10I	CCTNAGC	2 cut(s)	91, 120
BpuEI	CTTGAG	1 cut(s)	706
BpuMI	CCSGG	1 cut(s)	496
BsaAI	YACGTR	1 cut(s)	374
BsaBI	GATNNNNATC	1 cut(s)	283
BsaHI	GRCGYC	2 cut(s)	87, 752
BsaJI	CCNNGG	1 cut(s)	848
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 825
Bse1I	ACTGG	4 cut(s)	47, 371, 398, 483
Bse8I	GATNNNNATC	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	958
BseDI	CCNNGG	1 cut(s)	848
BseGI	GGATG	5 cut(s)	15, 35, 157, 503, 815
BseJI	GATNNNNATC	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	404, 825
BseMII	CTCAG	2 cut(s)	105, 134
BseNI	ACTGG	4 cut(s)	47, 371, 398, 483
BseRI	GAGGAG	3 cut(s)	45, 481, 517
BseXI	GCAGC	8 cut(s)	111, 139, 148, 151, 160, 163, 272, 398
BshNI	GGYRCC	1 cut(s)	86
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	4 cut(s)	358, 415, 495, 578
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	2 cut(s)	404, 825
BsmAI	GTCTC	1 cut(s)	579
BsmFI	GGGAC	1 cut(s)	380
BsmI	GAATGC	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	385
Bsp143I	GATC	5 cut(s)	201, 212, 616, 746, 964
BspACI	CCGC	9 cut(s)	155, 171, 177, 195, 378, 388, 405, 780, 819
BspCNI	CTCAG	2 cut(s)	104, 133
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	2 cut(s)	54, 88
BspMAI	CTGCAG	1 cut(s)	129
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	2 cut(s)	196, 220
BspQI	GCTCTTC	2 cut(s)	958, 988
BspT107I	GGYRCC	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	559
BsrBI	CCGCTC	1 cut(s)	171
BsrI	ACTGG	4 cut(s)	47, 371, 398, 483
BssECI	CCNNGG	1 cut(s)	848
BssMI	GATC	5 cut(s)	201, 212, 616, 746, 964
BssNI	GRCGYC	2 cut(s)	87, 752
Bst2UI	CCWGG	1 cut(s)	958
Bst6I	CTCTTC	3 cut(s)	877, 958, 988
BstACI	GRCGYC	2 cut(s)	87, 752
BstAFI	CTTAAG	1 cut(s)	559
BstAPI	GCANNNNNTGC	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	374
BstC8I	GCNNGC	1 cut(s)	719
BstDEI	CTNAG	2 cut(s)	91, 120
BstF5I	GGATG	5 cut(s)	15, 35, 157, 503, 815
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	5 cut(s)	204, 215, 619, 749, 967
BstMAI	GTCTC	1 cut(s)	579
BstMBI	GATC	5 cut(s)	201, 212, 616, 746, 964
BstNI	CCWGG	1 cut(s)	958
BstSCI	CCNGG	2 cut(s)	494, 956
BstSFI	CTRYAG	2 cut(s)	125, 319
BstV1I	GCAGC	8 cut(s)	111, 139, 148, 151, 160, 163, 272, 398
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BtgZI	GCGATG	1 cut(s)	870
BtsCI	GGATG	5 cut(s)	15, 35, 157, 503, 815
BtsI	GCAGTG	1 cut(s)	462
BtsIMutI	CAGTG	2 cut(s)	263, 462
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	719
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	89
CseI	GACGC	2 cut(s)	741, 852
Csp6I	GTAC	1 cut(s)	429
CviAII	CATG	4 cut(s)	74, 107, 649, 700
CviQI	GTAC	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	91, 120
DinI	GGCGCC	1 cut(s)	88
DpnI	GATC	5 cut(s)	203, 214, 618, 748, 966
DpnII	GATC	5 cut(s)	201, 212, 616, 746, 964
DriI	GACNNNNNGTC	1 cut(s)	688
Eam1104I	CTCTTC	3 cut(s)	877, 958, 988
Eam1105I	GACNNNNNGTC	1 cut(s)	688
EarI	CTCTTC	3 cut(s)	877, 958, 988
EciI	GGCGGA	2 cut(s)	192, 393
Ecl136II	GAGCTC	1 cut(s)	383
Eco24I	GRGCYC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	843
Eco72I	CACGTG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	956
EcoT22I	ATGCAT	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	385
EgeI	GGCGCC	1 cut(s)	88
EheI	GGCGCC	1 cut(s)	88
FaeI	CATG	4 cut(s)	77, 110, 652, 703
FaiI	YATR	9 cut(s)	69, 75, 108, 537, 650, 666, 701, 725, 776
FalI	AAGNNNNNCTT	2 cut(s)	12, 44
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	4 cut(s)	73, 106, 648, 699
FauI	CCCGC	1 cut(s)	164
FokI	GGATG	5 cut(s)	2, 22, 144, 490, 802
FriOI	GRGCYC	1 cut(s)	385
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	1 cut(s)	88
HaeII	RGCGCY	1 cut(s)	90
HapII	CCGG	4 cut(s)	358, 415, 495, 578
HgaI	GACGC	2 cut(s)	741, 852
HhaI	GCGC	1 cut(s)	89
Hin1I	GRCGYC	2 cut(s)	87, 752
Hin1II	CATG	4 cut(s)	77, 110, 652, 703
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	7 cut(s)	32, 284, 520, 592, 676, 797, 842
HpaII	CCGG	4 cut(s)	358, 415, 495, 578
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188I	TCNGA	4 cut(s)	60, 206, 276, 614
Hpy188III	TCNNGA	3 cut(s)	29, 74, 680
Hpy8I	GTNNAC	1 cut(s)	223
HpyCH4IV	ACGT	3 cut(s)	243, 373, 393
HpyCH4V	TGCA	3 cut(s)	127, 348, 503
HpyF3I	CTNAG	2 cut(s)	91, 120
HpySE526I	ACGT	3 cut(s)	243, 373, 393
Hsp92I	GRCGYC	2 cut(s)	87, 752
Hsp92II	CATG	4 cut(s)	77, 110, 652, 703
HspAI	GCGC	1 cut(s)	87
KasI	GGCGCC	1 cut(s)	86
Kzo9I	GATC	5 cut(s)	201, 212, 616, 746, 964
LguI	GCTCTTC	2 cut(s)	958, 988
LmnI	GCTCC	4 cut(s)	58, 168, 380, 704
Lsp1109I	GCAGC	8 cut(s)	111, 139, 148, 151, 160, 163, 272, 398
LweI	GCATC	4 cut(s)	166, 269, 512, 893
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	3 cut(s)	243, 373, 393
MalI	GATC	5 cut(s)	203, 214, 618, 748, 966
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	5 cut(s)	201, 212, 616, 746, 964
MboII	GAAGA	7 cut(s)	104, 792, 864, 888, 923, 945, 975
MflI	RGATCY	1 cut(s)	616
MhlI	GDGCHC	1 cut(s)	385
MluCI	AATT	2 cut(s)	64, 946
Mly113I	GGCGCC	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	685, 851
MmeI	TCCRAC	1 cut(s)	63
Mph1103I	ATGCAT	1 cut(s)	505
MseI	TTAA	3 cut(s)	560, 903, 933
MslI	CAYNNNNRTG	2 cut(s)	162, 268
MspA1I	CMGCKG	1 cut(s)	124
MspCI	CTTAAG	1 cut(s)	559
MspI	CCGG	4 cut(s)	358, 415, 495, 578
MspR9I	CCNGG	2 cut(s)	496, 958
Mva1269I	GAATGC	1 cut(s)	505
MvaI	CCWGG	1 cut(s)	958
NarI	GGCGCC	1 cut(s)	87
NciI	CCSGG	1 cut(s)	496
NdeII	GATC	5 cut(s)	201, 212, 616, 746, 964
NlaIII	CATG	4 cut(s)	77, 110, 652, 703
NlaIV	GGNNCC	2 cut(s)	54, 88
NmeAIII	GCCGAG	1 cut(s)	873
NsiI	ATGCAT	1 cut(s)	505
PagI	TCATGA	1 cut(s)	73
PciSI	GCTCTTC	2 cut(s)	958, 988
PctI	GAATGC	1 cut(s)	505
PfeI	GAWTC	5 cut(s)	32, 284, 520, 592, 797
PfoI	TCCNGGA	2 cut(s)	494, 956
PleI	GAGTC	2 cut(s)	684, 850
PluTI	GGCGCC	1 cut(s)	90
PmaCI	CACGTG	1 cut(s)	374
PmlI	CACGTG	1 cut(s)	374
PpsI	GAGTC	2 cut(s)	684, 850
Ppu21I	YACGTR	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	385
Psp6I	CCWGG	1 cut(s)	956
PspCI	CACGTG	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	956
PspN4I	GGNNCC	2 cut(s)	54, 88
PstI	CTGCAG	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	1 cut(s)	124
RsaI	GTAC	1 cut(s)	430
RsaNI	GTAC	1 cut(s)	429
RseI	CAYNNNNRTG	2 cut(s)	162, 268
SacI	GAGCTC	1 cut(s)	385
SapI	GCTCTTC	2 cut(s)	958, 988
SaqAI	TTAA	3 cut(s)	560, 903, 933
Sau3AI	GATC	5 cut(s)	201, 212, 616, 746, 964
SchI	GAGTC	2 cut(s)	685, 851
ScrFI	CCNGG	2 cut(s)	496, 958
SduI	GDGCHC	1 cut(s)	385
SfaNI	GCATC	4 cut(s)	166, 269, 512, 893
SfcI	CTRYAG	2 cut(s)	125, 319
SfoI	GGCGCC	1 cut(s)	88
SmiMI	CAYNNNNRTG	2 cut(s)	162, 268
SmlI	CTYRAG	2 cut(s)	559, 685
SmoI	CTYRAG	2 cut(s)	559, 685
Sse9I	AATT	2 cut(s)	64, 946
SsiI	CCGC	9 cut(s)	155, 171, 177, 195, 378, 388, 405, 780, 819
SspDI	GGCGCC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	471
SstI	GAGCTC	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	494, 956
TaiI	ACGT	3 cut(s)	246, 376, 396
TaqI	TCGA	1 cut(s)	200
TasI	AATT	2 cut(s)	64, 946
TauI	GCSGC	2 cut(s)	157, 198
TfiI	GAWTC	5 cut(s)	32, 284, 520, 592, 797
Tru1I	TTAA	3 cut(s)	560, 903, 933
Tru9I	TTAA	3 cut(s)	560, 903, 933
TscAI	CASTG	2 cut(s)	270, 469
TseI	GCWGC	8 cut(s)	124, 127, 136, 139, 148, 151, 260, 411
TspDTI	ATGAA	3 cut(s)	24, 605, 753
TspGWI	ACGGA	1 cut(s)	93
TspRI	CASTG	2 cut(s)	270, 469
Vha464I	CTTAAG	1 cut(s)	559
XspI	CTAG	1 cut(s)	471
Zsp2I	ATGCAT	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.