pycom11g09190

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0011693
Physical Location & Seq
Reverse (-)
7374006 .. 7375305
1300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g09190.1

Sequence Viewer

Length: 1107 bp
ATGGTTTTCTCATCTATTCCAGTTTATGTGGATCCTCCCAATTGGCACCAGCAACCAAATTATCATCCACTAGGAGGTACTACTGCTGGAAGTGAAAATCCACATGAATTTCCACCACTCCCTCCACCACCGTCACTAACTCATGTCTGTGGTGCAGGCAGTATTAGTGGTGTTGGTGGTGGCCCAGGCTCCATCAGACCCAGTTCGATGTCTGATCGAGCCCGTCTGGCAAAGATTCCACAACCAGAAACTGCGCTCAAGTGTCCTCGGTGTGAGTCCACCAACACCAAGTTTTGCTACTTCAATAACTACAGCCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGGCGCTATTGGACCCGAGGAGGTGCCCTAAGGAGCGTTCCTGTTGGAGGAGGATGTCGCCGAAACAAGAAAACTAAAAGCAACAGCAGCAGCAGCAGTCGATCCAAATCTCCAGTAGCCAGTGGCGATCATATCCAAACAGGTTCCAACTCAATTACCAACAACTCATCAAATCATATGATTGGAAATACTCCTCATCATTTGACACAACTACCACCAAGTACTCATCAATCACTACCATTTCTAGCCTCATCCATACCAAGTCTAGGTCGTTATGGAGTAGCTGGGAACATGGGATTGAACTTCAATGAGATCCAGCAGGAACAGACTGATCATCACCATCATCATATGGGGTTTCAGTTTCATCAGATTGCAGGAGGCAATAATATGAACAATTTAAGTGGTGGAATATTAGGAGGGGATCATAATAATCAGTGGCGTAATTCGAACTTGCAGCAAATTCCATTTTTGGTTGGTACCGGGTTTGAATCATCAACATCAACAGGTTTATACCCATTTCAAACGGGTGATCAAGGAGTCGATCATCAAGCAACAACTGATCCAATGGTTGGGAATAATTCTAGGGTTAATACTGAGCAGTTGCCTCCTCCAGTGAAAACTGAAGATAATCATGGTCTTACTTTTACAAGTACCCCTATTTCAGCGGAAACTAACAATAGCCAGTTCTGGGGTGGAAATTTGAATGCGTGGACAGATTTATCAGGGCTCAACTCTTCTTCCACAAGCCATCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

369

Amino Acids

39.7

Weight (kDa)

8.69

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 85 - 140 3.8e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 824
AccB1I GGYRCC 3 cut(s) 45, 371, 824
AccB7I CCANNNNNTGG 1 cut(s) 917
AciI CCGC 1 cut(s) 1013
AclWI GGATC 6 cut(s) 26, 39, 444, 655, 777, 902
AcsI RAATTY 3 cut(s) 107, 807, 1045
AcuI CTGAAG 1 cut(s) 990
AfaI GTAC 4 cut(s) 79, 571, 826, 1000
AfiI CCNNNNNNNGG 5 cut(s) 74, 395, 614, 917, 1036
AflIII ACRYGT 1 cut(s) 344
AgsI TTSAA 6 cut(s) 304, 649, 655, 836, 869, 1051
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 1 cut(s) 632
AluI AGCT 1 cut(s) 632
AlwI GGATC 6 cut(s) 26, 39, 444, 655, 777, 902
AlwNI CAGNNNCTG 1 cut(s) 251
Ama87I CYCGRG 1 cut(s) 363
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 4 cut(s) 435, 438, 441, 802
ApoI RAATTY 3 cut(s) 107, 807, 1045
Asp718I GGTACC 1 cut(s) 824
AspLEI GCGC 2 cut(s) 256, 354
AspS9I GGNCC 2 cut(s) 182, 360
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 2 cut(s) 677, 887
AsuII TTCGAA 1 cut(s) 794
AvaI CYCGRG 1 cut(s) 363
AvaII GGWCC 1 cut(s) 360
AxyI CCTNAGG 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 376
BamHI GGATCC 1 cut(s) 31
BanI GGYRCC 3 cut(s) 45, 371, 824
BanII GRGCYC 2 cut(s) 223, 1077
BbvI GCAGC 4 cut(s) 447, 450, 453, 814
BccI CCATC 3 cut(s) 200, 696, 1104
BciT130I CCWGG 1 cut(s) 186
BclI TGATCA 2 cut(s) 679, 877
BcnI CCSGG 1 cut(s) 829
BfaI CTAG 4 cut(s) 71, 593, 614, 930
BfmI CTRYAG 1 cut(s) 310
BfoI RGCGCY 1 cut(s) 355
BglI GCCNNNNNGGC 1 cut(s) 227
BisI GCNGC 4 cut(s) 436, 439, 442, 803
BlsI GCNGC 4 cut(s) 437, 440, 443, 804
BmcAI AGTACT 1 cut(s) 571
Bme1390I CCNGG 2 cut(s) 186, 829
Bme18I GGWCC 1 cut(s) 360
BmeT110I CYCGRG 1 cut(s) 363
BmgT120I GGNCC 2 cut(s) 182, 360
BmiI GGNNCC 7 cut(s) 33, 47, 190, 362, 373, 493, 826
BmrFI CCNGG 2 cut(s) 186, 829
BmrI ACTGGG 1 cut(s) 195
BmuI ACTGGG 1 cut(s) 195
BpmI CTGGAG 2 cut(s) 444, 942
Bpu14I TTCGAA 1 cut(s) 794
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 454
BsaJI CCNNGG 3 cut(s) 184, 266, 364
Bsc4I CCNNNNNNNGG 5 cut(s) 74, 395, 614, 917, 1036
Bse1I ACTGG 6 cut(s) 20, 201, 461, 468, 959, 1030
Bse21I CCTNAGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 454
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 3 cut(s) 184, 266, 364
BseGI GGATG 3 cut(s) 64, 407, 599
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 5 cut(s) 74, 395, 614, 917, 1036
BseMII CTCAG 2 cut(s) 335, 933
BseNI ACTGG 6 cut(s) 20, 201, 461, 468, 959, 1030
BseRI GAGGAG 4 cut(s) 381, 411, 531, 945
BseSI GKGCMC 1 cut(s) 376
BseXI GCAGC 4 cut(s) 447, 450, 453, 814
BseYI CCCAGC 1 cut(s) 632
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 3 cut(s) 45, 371, 824
BsiHKCI CYCGRG 1 cut(s) 363
BsiSI CCGG 1 cut(s) 828
BslI CCNNNNNNNGG 5 cut(s) 74, 395, 614, 917, 1036
BsmI GAATGC 1 cut(s) 1057
BsnI GGCC 1 cut(s) 183
BsoBI CYCGRG 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 3 cut(s) 223, 376, 1077
BspACI CCGC 1 cut(s) 1013
BspANI GGCC 1 cut(s) 183
BspCNI CTCAG 2 cut(s) 334, 934
BspLI GGNNCC 7 cut(s) 33, 47, 190, 362, 373, 493, 826
BspPI GGATC 6 cut(s) 26, 39, 444, 655, 777, 902
BspT104I TTCGAA 1 cut(s) 794
BspT107I GGYRCC 3 cut(s) 45, 371, 824
BsrI ACTGG 6 cut(s) 20, 201, 461, 468, 959, 1030
BssECI CCNNGG 3 cut(s) 184, 266, 364
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 1087
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 321, 377, 942
BstENI CCTNNNNNAGG 1 cut(s) 393
BstF5I GGATG 3 cut(s) 64, 407, 599
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 2 cut(s) 256, 354
BstMWI GCNNNNNNNGC 4 cut(s) 227, 336, 435, 441
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 348
BstSCI CCNGG 2 cut(s) 184, 827
BstSFI CTRYAG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 376
BstV1I GCAGC 4 cut(s) 447, 450, 453, 814
BstX2I RGATCY 2 cut(s) 31, 660
BstYI RGATCY 2 cut(s) 31, 660
Bsu36I CCTNAGG 1 cut(s) 377
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 3 cut(s) 64, 407, 599
BtsIMutI CAGTG 3 cut(s) 475, 788, 966
Cac8I GCNNGC 1 cut(s) 157
CaiI CAGNNNCTG 1 cut(s) 251
CfoI GCGC 2 cut(s) 256, 354
Cfr13I GGNCC 2 cut(s) 182, 360
Csp6I GTAC 4 cut(s) 78, 570, 825, 999
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 5 cut(s) 104, 143, 345, 640, 980
CviQI GTAC 4 cut(s) 78, 570, 825, 999
DdeI CTNAG 3 cut(s) 321, 377, 942
Eam1104I CTCTTC 1 cut(s) 1087
EarI CTCTTC 1 cut(s) 1087
Eco24I GRGCYC 2 cut(s) 223, 1077
Eco47I GGWCC 1 cut(s) 360
Eco57I CTGAAG 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 377
Eco88I CYCGRG 1 cut(s) 363
EcoNI CCTNNNNNAGG 1 cut(s) 393
EcoRII CCWGG 1 cut(s) 184
EcoT38I GRGCYC 2 cut(s) 223, 1077
FaeI CATG 5 cut(s) 107, 146, 348, 643, 983
FatI CATG 5 cut(s) 103, 142, 344, 639, 979
FauNDI CATATG 2 cut(s) 525, 696
FbaI TGATCA 2 cut(s) 679, 877
Fnu4HI GCNGC 4 cut(s) 436, 439, 442, 803
FokI GGATG 3 cut(s) 51, 414, 586
FriOI GRGCYC 2 cut(s) 223, 1077
Fsp4HI GCNGC 4 cut(s) 436, 439, 442, 803
FspBI CTAG 4 cut(s) 71, 593, 614, 930
GlaI GCGC 2 cut(s) 255, 353
GluI GCNGC 4 cut(s) 436, 439, 442, 803
GsaI CCCAGC 1 cut(s) 636
GsuI CTGGAG 2 cut(s) 444, 942
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 828
HhaI GCGC 2 cut(s) 256, 354
Hin1II CATG 5 cut(s) 107, 146, 348, 643, 983
Hin6I GCGC 2 cut(s) 254, 352
HinP1I GCGC 2 cut(s) 254, 352
HinfI GANTC 4 cut(s) 235, 275, 836, 885
HpaII CCGG 1 cut(s) 828
HphI GGTGA 2 cut(s) 677, 887
Hpy166II GTNNAC 2 cut(s) 279, 1059
Hpy188I TCNGA 3 cut(s) 197, 214, 717
Hpy8I GTNNAC 2 cut(s) 279, 1059
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 155, 339, 722, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 227, 336, 435, 441
HpyF3I CTNAG 3 cut(s) 321, 377, 942
Hsp92II CATG 5 cut(s) 107, 146, 348, 643, 983
HspAI GCGC 2 cut(s) 254, 352
KpnI GGTACC 1 cut(s) 828
Ksp22I TGATCA 2 cut(s) 679, 877
LmnI GCTCC 2 cut(s) 194, 381
Lsp1109I GCAGC 4 cut(s) 447, 450, 453, 814
MaeI CTAG 4 cut(s) 71, 593, 614, 930
MaeIII GTNAC 1 cut(s) 132
MboII GAAGA 3 cut(s) 983, 1074, 1077
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 31, 660
MhlI GDGCHC 3 cut(s) 223, 376, 1077
MluCI AATT 9 cut(s) 40, 58, 107, 501, 742, 790, 807, 925, 1045
MlyI GAGTC 2 cut(s) 284, 894
MmeI TCCRAC 2 cut(s) 373, 519
MseI TTAA 2 cut(s) 746, 936
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 1013
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 2 cut(s) 186, 829
MunI CAATTG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 1057
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 227, 336, 435, 441
NciI CCSGG 1 cut(s) 829
NdeI CATATG 2 cut(s) 525, 696
NlaIII CATG 5 cut(s) 107, 146, 348, 643, 983
NlaIV GGNNCC 7 cut(s) 33, 47, 190, 362, 373, 493, 826
NmuCI GTSAC 1 cut(s) 132
NspI RCATGY 1 cut(s) 348
NspV TTCGAA 1 cut(s) 794
PciI ACATGT 1 cut(s) 344
PctI GAATGC 1 cut(s) 1057
PfeI GAWTC 2 cut(s) 235, 836
PflMI CCANNNNNTGG 1 cut(s) 917
PkrI GCNGC 4 cut(s) 437, 440, 443, 804
PleI GAGTC 2 cut(s) 283, 893
PpsI GAGTC 2 cut(s) 283, 893
PscI ACATGT 1 cut(s) 344
Psp6I CCWGG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 7 cut(s) 33, 47, 190, 362, 373, 493, 826
PspPI GGNCC 2 cut(s) 182, 360
PstNI CAGNNNCTG 1 cut(s) 251
PsuI RGATCY 2 cut(s) 31, 660
RsaI GTAC 4 cut(s) 79, 571, 826, 1000
RsaNI GTAC 4 cut(s) 78, 570, 825, 999
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 2 cut(s) 746, 936
SatI GCNGC 4 cut(s) 436, 439, 442, 803
Sau96I GGNCC 2 cut(s) 182, 360
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 2 cut(s) 284, 894
ScrFI CCNGG 2 cut(s) 186, 829
SduI GDGCHC 3 cut(s) 223, 376, 1077
SetI ASST 6 cut(s) 79, 373, 493, 619, 634, 856
SfcI CTRYAG 1 cut(s) 310
SfuI TTCGAA 1 cut(s) 794
SinI GGWCC 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 257
SmoI CTYRAG 1 cut(s) 257
Sse9I AATT 9 cut(s) 40, 58, 107, 501, 742, 790, 807, 925, 1045
SsiI CCGC 1 cut(s) 1013
SspI AATATT 1 cut(s) 759
SspMI CTAG 4 cut(s) 71, 593, 614, 930
StyD4I CCNGG 2 cut(s) 184, 827
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 5 cut(s) 206, 217, 448, 794, 888
TasI AATT 9 cut(s) 40, 58, 107, 501, 742, 790, 807, 925, 1045
TatI WGTACW 1 cut(s) 569
TfiI GAWTC 2 cut(s) 235, 836
Tru1I TTAA 2 cut(s) 746, 936
Tru9I TTAA 2 cut(s) 746, 936
TscAI CASTG 3 cut(s) 475, 788, 966
TseFI GTSAC 1 cut(s) 132
TseI GCWGC 4 cut(s) 435, 438, 441, 802
Tsp45I GTSAC 1 cut(s) 132
TspDTI ATGAA 3 cut(s) 120, 701, 752
TspRI CASTG 3 cut(s) 475, 788, 966
Van91I CCANNNNNTGG 1 cut(s) 917
VpaK11BI GGWCC 1 cut(s) 360
XagI CCTNNNNNAGG 1 cut(s) 393
XapI RAATTY 3 cut(s) 107, 807, 1045
XceI RCATGY 1 cut(s) 348
XcmI CCANNNNNNNNNTGG 1 cut(s) 1037
XspI CTAG 4 cut(s) 71, 593, 614, 930
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.