Rw5G039460

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011693
Physical Location & Seq
Reverse (-)
69611039 .. 69612496
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G039460.1

Sequence Viewer

Length: 1020 bp
ATGGTTTTCTCATCTATTCCAGTCTATTTAGATCCTCCCAATTGGCACCAGCAACCAAATCATCCCCTAGGAAGTGGAAGTACCGAAAATCATCCACAGCTTCCACCACTGCCTCCACGGCAGTTCGGCACTCATGTCGGCGGCGGTGGTGGTACTGATGGTAGTGGTGGAAGTGGTACGGGCTCCATCAGACCCAACTCCATGGCTGATCGAGCCCGGCTGGCCAAGATGCCTCAACCAGAGACCGCACTCAAGTGTCCACGGTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACGTGCCGCCGTTACTGGACAAGAGGGGGTGCCCTTAGAAATGTTCCGGTGGGAGGAGGGTGCCGAAGAAACAAGAAGAGCAAAACCAGCAGCAGCAGCCGCTCCAAGTCTCCAGTATCAGCCAGTTCCACTGAGAATCAGCAGATGAGGCAAACAGGTTCTAACCCGACCGGTTTGATTAGTCATTTGTCGCAACCACAGACTCAGTCACTTCCTTTCCTGGAGTCGATACAGCATCTTGGTCGTTACGGTGGTGCTGGGAACATGGCATTAAACAGCTTCAATGAGATCCAGCAAGCTCAAGCTCAGAGTACTGATCACATGGGATTTCAGATAGGAGCTGGGAATAATTTGATGAACTTATCTGCAAATTCCTTCTTGGGTAGTACTGGCTTTGACTTATCATCAACAACAGGTTTATACTCATTTCAAAATACTACTGAAGGAGTTGATCAAGACAGTCAGCTAAGGACTGCTGATTCTAGGGTTACTACTCATCAGGTGCCTCCTGTAAAAGTTGAAGATCACAACCATGGGGTGAGTTTGACTAGACCCTTTTTGGGTATTTCAGGGAATAACAATAATAACAACAACGACAACAACAATCAGTTCTGGGGCGGAAATGCCTGGACGGATATATCAGGTACTCTCAACTCGTCTTCCACAAGCCATCTGATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

339

Amino Acids

36.55

Weight (kDa)

9.36

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 83 - 138 4.7e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1018
AccB1I GGYRCC 4 cut(s) 45, 365, 396, 838
AccBSI CCGCTC 1 cut(s) 438
AciI CCGC 6 cut(s) 141, 144, 246, 343, 436, 954
AclWI GGATC 2 cut(s) 26, 619
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 706
AcuI CTGAAG 1 cut(s) 798
AfaI GTAC 6 cut(s) 82, 154, 178, 649, 724, 982
AfiI CCNNNNNNNGG 2 cut(s) 389, 896
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 4 cut(s) 298, 619, 767, 857
AjiI CACGTC 1 cut(s) 339
AjnI CCWGG 2 cut(s) 555, 962
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 6 cut(s) 100, 615, 635, 641, 677, 802
AluI AGCT 6 cut(s) 100, 615, 635, 641, 677, 802
Alw26I GTCTC 2 cut(s) 236, 450
AlwI GGATC 2 cut(s) 26, 619
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 3 cut(s) 426, 429, 432
ApoI RAATTY 1 cut(s) 706
AsiGI ACCGGT 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 886
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 224
BanI GGYRCC 4 cut(s) 45, 365, 396, 838
BanII GRGCYC 2 cut(s) 185, 217
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
BbsI GAAGAC 1 cut(s) 987
BbvI GCAGC 3 cut(s) 438, 441, 444
BccI CCATC 3 cut(s) 152, 194, 1014
BceAI ACGGC 2 cut(s) 134, 330
BcgI CGANNNNNNTGC 4 cut(s) 118, 152, 560, 594
BciT130I CCWGG 2 cut(s) 557, 964
BclI TGATCA 2 cut(s) 652, 787
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 236, 450
BfaI CTAG 3 cut(s) 68, 819, 885
BfmI CTRYAG 1 cut(s) 304
BglI GCCNNNNNGGC 2 cut(s) 118, 221
BisI GCNGC 6 cut(s) 142, 343, 427, 430, 433, 436
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 6 cut(s) 143, 344, 428, 431, 434, 437
BmcAI AGTACT 2 cut(s) 649, 724
Bme1390I CCNGG 3 cut(s) 217, 557, 964
BmgBI CACGTC 1 cut(s) 339
BmiI GGNNCC 5 cut(s) 47, 184, 367, 398, 840
BmrFI CCNGG 3 cut(s) 217, 557, 964
BmsI GCATC 2 cut(s) 219, 580
BpiI GAAGAC 1 cut(s) 987
BpmI CTGGAG 2 cut(s) 432, 578
Bpu10I CCTNAGC 1 cut(s) 803
BpuEI CTTGAG 2 cut(s) 236, 621
BpuMI CCSGG 1 cut(s) 217
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 5 cut(s) 67, 116, 201, 260, 868
BsaWI WCCGGW 2 cut(s) 382, 506
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 896
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 5 cut(s) 20, 356, 449, 459, 730
BseBI CCWGG 2 cut(s) 557, 964
BseDI CCNNGG 5 cut(s) 67, 116, 201, 260, 868
BseGI GGATG 2 cut(s) 61, 91
BseLI CCNNNNNNNGG 2 cut(s) 389, 896
BseMII CTCAG 4 cut(s) 329, 459, 554, 656
BseNI ACTGG 5 cut(s) 20, 356, 449, 459, 730
BseRI GAGGAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 3 cut(s) 438, 441, 444
BseYI CCCAGC 2 cut(s) 593, 677
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 4 cut(s) 45, 365, 396, 838
BshTI ACCGGT 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 507
BsiSI CCGG 3 cut(s) 217, 383, 507
BslI CCNNNNNNNGG 2 cut(s) 389, 896
BsmAI GTCTC 2 cut(s) 236, 450
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 185, 217, 370
Bsp143I GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
Bsp19I CCATGG 2 cut(s) 201, 868
BspACI CCGC 6 cut(s) 141, 144, 246, 343, 436, 954
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 4 cut(s) 328, 460, 553, 655
BspLI GGNNCC 5 cut(s) 47, 184, 367, 398, 840
BspPI GGATC 2 cut(s) 26, 619
BspQI GCTCTTC 1 cut(s) 407
BspT107I GGYRCC 4 cut(s) 45, 365, 396, 838
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 5 cut(s) 20, 356, 449, 459, 730
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 5 cut(s) 67, 116, 201, 260, 868
BssMI GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
BssT1I CCWWGG 3 cut(s) 67, 201, 868
Bst2UI CCWGG 2 cut(s) 557, 964
Bst4CI ACNGT 3 cut(s) 264, 587, 797
Bst6I CTCTTC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 222, 633
BstDEI CTNAG 6 cut(s) 315, 371, 468, 540, 642, 803
BstDSI CCRYGG 4 cut(s) 116, 201, 260, 868
BstF5I GGATG 2 cut(s) 61, 91
BstKTI GATC 7 cut(s) 34, 211, 627, 655, 790, 862, 1014
BstMAI GTCTC 2 cut(s) 236, 450
BstMBI GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
BstMCI CGRYCG 1 cut(s) 507
BstMWI GCNNNNNNNGC 9 cut(s) 118, 212, 221, 330, 339, 423, 432, 435, 484
BstNI CCWGG 2 cut(s) 557, 964
BstSCI CCNGG 3 cut(s) 215, 555, 962
BstSFI CTRYAG 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 370
BstV1I GCAGC 3 cut(s) 438, 441, 444
BstV2I GAAGAC 1 cut(s) 987
BstX2I RGATCY 2 cut(s) 31, 624
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 2 cut(s) 31, 624
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 4 cut(s) 116, 201, 260, 868
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 61, 91
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 2 cut(s) 107, 465
Cac8I GCNNGC 2 cut(s) 222, 633
Cfr10I RCCGGY 1 cut(s) 506
Csp6I GTAC 6 cut(s) 81, 153, 177, 648, 723, 981
CspAI ACCGGT 1 cut(s) 506
CviAII CATG 5 cut(s) 134, 202, 601, 658, 869
CviQI GTAC 6 cut(s) 81, 153, 177, 648, 723, 981
DdeI CTNAG 6 cut(s) 315, 371, 468, 540, 642, 803
DpnI GATC 7 cut(s) 33, 210, 626, 654, 789, 861, 1013
DpnII GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
EciI GGCGGA 1 cut(s) 969
Eco130I CCWWGG 3 cut(s) 67, 201, 868
Eco24I GRGCYC 2 cut(s) 185, 217
Eco31I GGTCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 798
EcoRII CCWGG 2 cut(s) 555, 962
EcoT14I CCWWGG 3 cut(s) 67, 201, 868
EcoT38I GRGCYC 2 cut(s) 185, 217
ErhI CCWWGG 3 cut(s) 67, 201, 868
FaeI CATG 5 cut(s) 137, 205, 604, 661, 872
FaiI YATR 8 cut(s) 135, 203, 602, 659, 757, 870, 974, 1018
FatI CATG 5 cut(s) 133, 201, 600, 657, 868
FbaI TGATCA 2 cut(s) 652, 787
Fnu4HI GCNGC 6 cut(s) 142, 343, 427, 430, 433, 436
FokI GGATG 2 cut(s) 48, 78
FriOI GRGCYC 2 cut(s) 185, 217
Fsp4HI GCNGC 6 cut(s) 142, 343, 427, 430, 433, 436
FspBI CTAG 3 cut(s) 68, 819, 885
GluI GCNGC 6 cut(s) 142, 343, 427, 430, 433, 436
GsaI CCCAGC 2 cut(s) 597, 681
GsuI CTGGAG 2 cut(s) 432, 578
HaeIII GGCC 1 cut(s) 224
HapII CCGG 3 cut(s) 217, 383, 507
Hin1II CATG 5 cut(s) 137, 205, 604, 661, 872
HinfI GANTC 5 cut(s) 269, 472, 538, 560, 815
HpaII CCGG 3 cut(s) 217, 383, 507
HphI GGTGA 1 cut(s) 886
Hpy166II GTNNAC 2 cut(s) 260, 273
Hpy188I TCNGA 4 cut(s) 191, 645, 669, 1011
Hpy188III TCNNGA 1 cut(s) 791
Hpy8I GTNNAC 2 cut(s) 260, 273
HpyAV CCTTC 2 cut(s) 721, 773
HpyCH4III ACNGT 3 cut(s) 264, 587, 797
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 333, 704
HpyF10VI GCNNNNNNNGC 9 cut(s) 118, 212, 221, 330, 339, 423, 432, 435, 484
HpyF3I CTNAG 6 cut(s) 315, 371, 468, 540, 642, 803
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 5 cut(s) 137, 205, 604, 661, 872
Ksp22I TGATCA 2 cut(s) 652, 787
Kzo9I GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 3 cut(s) 188, 443, 674
Lsp1109I GCAGC 3 cut(s) 438, 441, 444
LweI GCATC 2 cut(s) 219, 580
MaeI CTAG 3 cut(s) 68, 819, 885
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 4 cut(s) 347, 543, 581, 823
MalI GATC 7 cut(s) 33, 210, 626, 654, 789, 861, 1013
MbiI CCGCTC 1 cut(s) 438
MboI GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
MboII GAAGA 4 cut(s) 414, 424, 869, 987
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 31, 624
MhlI GDGCHC 3 cut(s) 185, 217, 370
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 3 cut(s) 40, 685, 706
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 3 cut(s) 278, 532, 569
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 2 cut(s) 253, 867
Msp20I TGGCCA 1 cut(s) 224
MspI CCGG 3 cut(s) 217, 383, 507
MspR9I CCNGG 3 cut(s) 217, 557, 964
MunI CAATTG 1 cut(s) 40
MvaI CCWGG 2 cut(s) 557, 964
MwoI GCNNNNNNNGC 9 cut(s) 118, 212, 221, 330, 339, 423, 432, 435, 484
NciI CCSGG 1 cut(s) 217
NcoI CCATGG 2 cut(s) 201, 868
NdeII GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
NlaIII CATG 5 cut(s) 137, 205, 604, 661, 872
NlaIV GGNNCC 5 cut(s) 47, 184, 367, 398, 840
NmuCI GTSAC 1 cut(s) 543
OliI CACNNNNGTG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 472, 815
PflFI GACNNNGTC 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 6 cut(s) 143, 344, 428, 431, 434, 437
PleI GAGTC 3 cut(s) 277, 532, 568
PpsI GAGTC 3 cut(s) 277, 532, 568
PsiI TTATAA 1 cut(s) 1018
Psp6I CCWGG 2 cut(s) 555, 962
PspFI CCCAGC 2 cut(s) 593, 677
PspGI CCWGG 2 cut(s) 555, 962
PspN4I GGNNCC 5 cut(s) 47, 184, 367, 398, 840
PsuI RGATCY 2 cut(s) 31, 624
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 6 cut(s) 82, 154, 178, 649, 724, 982
RsaNI GTAC 6 cut(s) 81, 153, 177, 648, 723, 981
RseI CAYNNNNRTG 2 cut(s) 253, 867
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 6 cut(s) 142, 343, 427, 430, 433, 436
Sau3AI GATC 7 cut(s) 31, 208, 624, 652, 787, 859, 1011
ScaI AGTACT 2 cut(s) 649, 724
SchI GAGTC 3 cut(s) 278, 532, 569
ScrFI CCNGG 3 cut(s) 217, 557, 964
SduI GDGCHC 3 cut(s) 185, 217, 370
SfaNI GCATC 2 cut(s) 219, 580
SfcI CTRYAG 1 cut(s) 304
SmiMI CAYNNNNRTG 2 cut(s) 253, 867
SmlI CTYRAG 2 cut(s) 251, 636
SmoI CTYRAG 2 cut(s) 251, 636
Sse9I AATT 3 cut(s) 40, 685, 706
SsiI CCGC 6 cut(s) 141, 144, 246, 343, 436, 954
SspMI CTAG 3 cut(s) 68, 819, 885
StyD4I CCNGG 3 cut(s) 215, 555, 962
StyI CCWWGG 3 cut(s) 67, 201, 868
TaaI ACNGT 3 cut(s) 264, 587, 797
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 211, 563
TasI AATT 3 cut(s) 40, 685, 706
TatI WGTACW 2 cut(s) 647, 722
TauI GCSGC 3 cut(s) 144, 345, 438
TfiI GAWTC 2 cut(s) 472, 815
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 2 cut(s) 114, 472
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 3 cut(s) 426, 429, 432
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 1 cut(s) 707
TspGWI ACGGA 1 cut(s) 983
TspRI CASTG 2 cut(s) 114, 472
Tth111I GACNNNGTC 1 cut(s) 541
XapI RAATTY 1 cut(s) 706
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 3 cut(s) 68, 819, 885
ZrmI AGTACT 2 cut(s) 649, 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.