FvH4_3g35790

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011693
Physical Location & Seq
Reverse (-)
30718205 .. 30720161
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g35790.t2

Sequence Viewer

Length: 903 bp
ATGGCTGATCGAGCCCGGCTGGCCAAGATACCACAGCCAGAGACCGCACTAAAGTGTCCACGGTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACTTGCCGCCGTTACTGGACAAGAGGGGGTGCCCTTAGAAATGTTCCGGTGGGAGGAGGGTGCCGAAGAAACAAGAAGAGCAAAACCAGCAGCAGCAGCCGCTCCAAGTCTCCAGCCAGTTCCACTGAGAATCAGCAGATGAGGGAAACAGGTTCGAACAACCCGACTGGTTTGATTAATCAGTTGTCGCACCCACAGGCTCAGTCACTTCCTTTCCTGGAGTCGATACAGAATCTTAGTCGTTACGGTGGTGCTGGGAACATGGGATTAAACAGCTTCAATGAGATCCAGCAAGTTCAAGCTCAGAGTACTACTGATCACATGGGATTTCAGATAGGAGCTGGGAACAATATGATGAACTTATCTGGTGGACTGGGAATGGATCAGTGGCGTAATTTGCAGCAAATTCCTTTCTTGGGTAGTACTGGTTTCGAGTCATCATCAACAACAGGGTTATACCCATTTCAAAATACTACTGAGGGAGTTGATCAAGACAGTCAGCTCAGGAGTACAAATTCTAGGGTTACTACTACTCATCAGGTGCCTCCTGTGAAAGTTGAAGATCACAACCATGGGGTGAGTTTGACTAGACCCTTTTTGGGTATTTCAGGCAATAACATTAACAGTAGTAACAGCAACATCAACAACGACAACGACAACAACAACAACAGCAACAACAACAACAACAACAACCAGTTCTGGGGTGGAAATGCGTGGGCGGATTTATCAGGTACTCTCAACTCTTCTTCCACAAGCCATCTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

301

Amino Acids

32.86

Weight (kDa)

9.38

Isoelectric Point (pI)

47.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 83 - 138 5.3e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 901
AccB1I GGYRCC 3 cut(s) 164, 195, 676
AccBSI CCGCTC 1 cut(s) 237
AciI CCGC 4 cut(s) 45, 142, 235, 854
AclWI GGATC 2 cut(s) 415, 525
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 2 cut(s) 540, 649
AfaI GTAC 4 cut(s) 445, 559, 646, 868
AfiI CCNNNNNNNGG 4 cut(s) 188, 551, 734, 835
AgsI TTSAA 5 cut(s) 97, 415, 434, 602, 695
AjnI CCWGG 1 cut(s) 351
AjuI GAANNNNNNNTTGG 2 cut(s) 68, 100
AleI CACNNNNGTG 1 cut(s) 52
AluBI AGCT 4 cut(s) 411, 437, 476, 637
AluI AGCT 4 cut(s) 411, 437, 476, 637
Alw26I GTCTC 2 cut(s) 35, 249
AlwI GGATC 2 cut(s) 415, 525
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 4 cut(s) 225, 228, 231, 535
ApoI RAATTY 2 cut(s) 540, 649
AseI ATTAAT 1 cut(s) 312
AsuC2I CCSGG 1 cut(s) 16
AsuHPI GGTGA 1 cut(s) 724
AsuII TTCGAA 1 cut(s) 290
BaeGI GKGCMC 1 cut(s) 169
BalI TGGCCA 1 cut(s) 23
BanI GGYRCC 3 cut(s) 164, 195, 676
BanII GRGCYC 1 cut(s) 16
BbvI GCAGC 4 cut(s) 237, 240, 243, 547
BccI CCATC 1 cut(s) 900
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 2 cut(s) 451, 622
BcnI CCSGG 1 cut(s) 16
BcoDI GTCTC 2 cut(s) 35, 249
BfaI CTAG 2 cut(s) 654, 723
BfmI CTRYAG 1 cut(s) 103
BglI GCCNNNNNGGC 1 cut(s) 20
BisI GCNGC 6 cut(s) 142, 226, 229, 232, 235, 536
BlsI GCNGC 6 cut(s) 143, 227, 230, 233, 236, 537
BmcAI AGTACT 2 cut(s) 445, 559
Bme1390I CCNGG 2 cut(s) 16, 353
BmiI GGNNCC 3 cut(s) 166, 197, 678
BmrFI CCNGG 2 cut(s) 16, 353
BmrI ACTGGG 1 cut(s) 518
BmuI ACTGGG 1 cut(s) 518
BpmI CTGGAG 2 cut(s) 231, 374
Bpu10I CCTNAGC 1 cut(s) 638
Bpu14I TTCGAA 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 35
BsaJI CCNNGG 2 cut(s) 59, 706
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 551, 734, 835
Bse1I ACTGG 6 cut(s) 155, 252, 307, 513, 565, 829
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 2 cut(s) 59, 706
BseLI CCNNNNNNNGG 4 cut(s) 188, 551, 734, 835
BseMII CTCAG 6 cut(s) 128, 252, 350, 452, 603, 652
BseNI ACTGG 6 cut(s) 155, 252, 307, 513, 565, 829
BseRI GAGGAG 1 cut(s) 204
BseSI GKGCMC 1 cut(s) 169
BseXI GCAGC 4 cut(s) 237, 240, 243, 547
BseYI CCCAGC 2 cut(s) 389, 476
BshFI GGCC 1 cut(s) 23
BshNI GGYRCC 3 cut(s) 164, 195, 676
BsiSI CCGG 2 cut(s) 16, 182
BslI CCNNNNNNNGG 4 cut(s) 188, 551, 734, 835
BsmAI GTCTC 2 cut(s) 35, 249
BsnI GGCC 1 cut(s) 23
Bso31I GGTCTC 1 cut(s) 35
Bsp119I TTCGAA 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 16, 169
Bsp143I GATC 6 cut(s) 7, 420, 451, 517, 622, 697
Bsp19I CCATGG 1 cut(s) 706
BspACI CCGC 4 cut(s) 45, 142, 235, 854
BspANI GGCC 1 cut(s) 23
BspCNI CTCAG 6 cut(s) 127, 253, 349, 451, 604, 651
BspLI GGNNCC 3 cut(s) 166, 197, 678
BspPI GGATC 2 cut(s) 415, 525
BspQI GCTCTTC 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 290
BspT107I GGYRCC 3 cut(s) 164, 195, 676
BspTNI GGTCTC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 237
BsrI ACTGG 6 cut(s) 155, 252, 307, 513, 565, 829
BssECI CCNNGG 2 cut(s) 59, 706
BssMI GATC 6 cut(s) 7, 420, 451, 517, 622, 697
BssT1I CCWWGG 1 cut(s) 706
Bst2UI CCWGG 1 cut(s) 353
Bst4CI ACNGT 4 cut(s) 63, 383, 632, 761
Bst6I CTCTTC 2 cut(s) 206, 883
BstAPI GCANNNNNTGC 1 cut(s) 138
BstBI TTCGAA 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 21
BstDEI CTNAG 8 cut(s) 114, 170, 261, 336, 371, 438, 612, 638
BstDSI CCRYGG 2 cut(s) 59, 706
BstKTI GATC 6 cut(s) 10, 423, 454, 520, 625, 700
BstMAI GTCTC 2 cut(s) 35, 249
BstMBI GATC 6 cut(s) 7, 420, 451, 517, 622, 697
BstMWI GCNNNNNNNGC 8 cut(s) 11, 20, 129, 138, 222, 231, 234, 532
BstNI CCWGG 1 cut(s) 353
BstSCI CCNGG 2 cut(s) 14, 351
BstSFI CTRYAG 1 cut(s) 103
BstSLI GKGCMC 1 cut(s) 169
BstV1I GCAGC 4 cut(s) 237, 240, 243, 547
BstX2I RGATCY 1 cut(s) 420
BstYI RGATCY 1 cut(s) 420
BsuRI GGCC 1 cut(s) 23
BtgI CCRYGG 2 cut(s) 59, 706
BtsIMutI CAGTG 2 cut(s) 258, 527
Cac8I GCNNGC 1 cut(s) 21
Csp6I GTAC 4 cut(s) 444, 558, 645, 867
CviAII CATG 3 cut(s) 397, 457, 707
CviQI GTAC 4 cut(s) 444, 558, 645, 867
DdeI CTNAG 8 cut(s) 114, 170, 261, 336, 371, 438, 612, 638
DpnI GATC 6 cut(s) 9, 422, 453, 519, 624, 699
DpnII GATC 6 cut(s) 7, 420, 451, 517, 622, 697
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 2 cut(s) 206, 883
EarI CTCTTC 2 cut(s) 206, 883
EciI GGCGGA 1 cut(s) 869
Eco130I CCWWGG 1 cut(s) 706
Eco24I GRGCYC 1 cut(s) 16
Eco31I GGTCTC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 351
EcoT14I CCWWGG 1 cut(s) 706
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 1 cut(s) 706
FaeI CATG 3 cut(s) 400, 460, 710
FaiI YATR 6 cut(s) 398, 458, 488, 592, 708, 901
FatI CATG 3 cut(s) 396, 456, 706
FbaI TGATCA 2 cut(s) 451, 622
Fnu4HI GCNGC 6 cut(s) 142, 226, 229, 232, 235, 536
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 6 cut(s) 142, 226, 229, 232, 235, 536
FspBI CTAG 2 cut(s) 654, 723
GluI GCNGC 6 cut(s) 142, 226, 229, 232, 235, 536
GsaI CCCAGC 2 cut(s) 393, 480
GsuI CTGGAG 2 cut(s) 231, 374
HaeIII GGCC 1 cut(s) 23
HapII CCGG 2 cut(s) 16, 182
Hin1II CATG 3 cut(s) 400, 460, 710
HinfI GANTC 5 cut(s) 68, 265, 356, 367, 569
HpaII CCGG 2 cut(s) 16, 182
HphI GGTGA 1 cut(s) 724
Hpy166II GTNNAC 3 cut(s) 59, 72, 506
Hpy188I TCNGA 2 cut(s) 441, 468
Hpy188III TCNNGA 2 cut(s) 626, 640
Hpy8I GTNNAC 3 cut(s) 59, 72, 506
HpyCH4III ACNGT 4 cut(s) 63, 383, 632, 761
HpyCH4V TGCA 2 cut(s) 132, 535
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 20, 129, 138, 222, 231, 234, 532
HpyF3I CTNAG 8 cut(s) 114, 170, 261, 336, 371, 438, 612, 638
Hsp92II CATG 3 cut(s) 400, 460, 710
Ksp22I TGATCA 2 cut(s) 451, 622
Kzo9I GATC 6 cut(s) 7, 420, 451, 517, 622, 697
LguI GCTCTTC 1 cut(s) 206
LmnI GCTCC 2 cut(s) 242, 473
Lsp1109I GCAGC 4 cut(s) 237, 240, 243, 547
MaeI CTAG 2 cut(s) 654, 723
MaeIII GTNAC 5 cut(s) 146, 339, 377, 658, 764
MalI GATC 6 cut(s) 9, 422, 453, 519, 624, 699
MbiI CCGCTC 1 cut(s) 237
MboI GATC 6 cut(s) 7, 420, 451, 517, 622, 697
MboII GAAGA 5 cut(s) 213, 223, 707, 870, 873
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 2 cut(s) 16, 169
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 3 cut(s) 529, 540, 649
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 3 cut(s) 77, 365, 578
MnlI CCTC 8 cut(s) 119, 129, 152, 182, 185, 270, 607, 690
Mox20I TGGCCA 1 cut(s) 23
MscI TGGCCA 1 cut(s) 23
MseI TTAA 3 cut(s) 312, 404, 756
MslI CAYNNNNRTG 2 cut(s) 52, 705
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 2 cut(s) 16, 182
MspR9I CCNGG 2 cut(s) 16, 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 8 cut(s) 11, 20, 129, 138, 222, 231, 234, 532
NciI CCSGG 1 cut(s) 16
NcoI CCATGG 1 cut(s) 706
NdeII GATC 6 cut(s) 7, 420, 451, 517, 622, 697
NlaIII CATG 3 cut(s) 400, 460, 710
NlaIV GGNNCC 3 cut(s) 166, 197, 678
NmuCI GTSAC 1 cut(s) 339
NspV TTCGAA 1 cut(s) 290
OliI CACNNNNGTG 1 cut(s) 52
PciSI GCTCTTC 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 296
PfeI GAWTC 2 cut(s) 265, 367
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 6 cut(s) 143, 227, 230, 233, 236, 537
PleI GAGTC 3 cut(s) 76, 364, 577
PpsI GAGTC 3 cut(s) 76, 364, 577
PshBI ATTAAT 1 cut(s) 312
PsiI TTATAA 1 cut(s) 901
Psp6I CCWGG 1 cut(s) 351
PspFI CCCAGC 2 cut(s) 389, 476
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 3 cut(s) 166, 197, 678
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 4 cut(s) 445, 559, 646, 868
RsaNI GTAC 4 cut(s) 444, 558, 645, 867
RseI CAYNNNNRTG 2 cut(s) 52, 705
SapI GCTCTTC 1 cut(s) 206
SaqAI TTAA 3 cut(s) 312, 404, 756
SatI GCNGC 6 cut(s) 142, 226, 229, 232, 235, 536
Sau3AI GATC 6 cut(s) 7, 420, 451, 517, 622, 697
ScaI AGTACT 2 cut(s) 445, 559
SchI GAGTC 3 cut(s) 77, 365, 578
ScrFI CCNGG 2 cut(s) 16, 353
SduI GDGCHC 2 cut(s) 16, 169
SetI ASST 7 cut(s) 289, 413, 439, 478, 639, 678, 868
SfcI CTRYAG 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 290
SmiMI CAYNNNNRTG 2 cut(s) 52, 705
Sse9I AATT 3 cut(s) 529, 540, 649
SsiI CCGC 4 cut(s) 45, 142, 235, 854
SspMI CTAG 2 cut(s) 654, 723
StyD4I CCNGG 2 cut(s) 14, 351
StyI CCWWGG 1 cut(s) 706
TaaI ACNGT 4 cut(s) 63, 383, 632, 761
TaqI TCGA 4 cut(s) 10, 290, 359, 567
TasI AATT 3 cut(s) 529, 540, 649
TatI WGTACW 3 cut(s) 443, 557, 644
TauI GCSGC 2 cut(s) 144, 237
TfiI GAWTC 2 cut(s) 265, 367
Tru1I TTAA 3 cut(s) 312, 404, 756
Tru9I TTAA 3 cut(s) 312, 404, 756
TscAI CASTG 2 cut(s) 265, 527
TseFI GTSAC 1 cut(s) 339
TseI GCWGC 4 cut(s) 225, 228, 231, 535
Tsp45I GTSAC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 506
TspRI CASTG 2 cut(s) 265, 527
VspI ATTAAT 1 cut(s) 312
XapI RAATTY 2 cut(s) 540, 649
XcmI CCANNNNNNNNNTGG 1 cut(s) 836
XspI CTAG 2 cut(s) 654, 723
ZrmI AGTACT 2 cut(s) 445, 559
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.