Prupe.6G079500_v2.0.a1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0011693
Physical Location & Seq
Reverse (-)
5416335 .. 5418276
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G079500.1

Sequence Viewer

Length: 1089 bp
ATGGTTTTCTCATCTATTCCAGTCTATTTAGATCCTCCCAATTGGCACCAGCAACCAAATCATCATCCACTGGGAAGTACTACTACTGGAAATGAAAACCCACTCGAGCTTCCACCGCTGCCTCTGCCGCCACTCACTCATGTCGGTGGCCAAGGGAGTACTGGTGGTGGTGGCCCGGGCTCCATCAGACCCAGTTCGATGTCTGATCGAGCCCGTATGGCAAAGATTCCACAGCCAGAAACCGCCCTCAAGTGTCCGAGGTGTGAGTCCACCAACACCAAGTTTTGCTACTTCAATAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACATGTCGGCGTTACTGGACCCGAGGAGGTGCCCTAAGGAATGTTCCAGTCGGAGGAGGATGTCGCCGAAACAAGAAAAGCAAAAGCAACAGCAGCAGCAGCAGCAGGTCCAAATCTCCAGCAGCCACAAGTACCGATCATATTCAAACAGGTTCCAACTCATCTGATCATCATATGATTGATAGTCATTTGTCACAACTGCCACCGCCAACTCATCAATCCCTGCCATTTCTGGCCTCAACAATCCAAAGTCTTGGACGTTATGGTGGAGCTGGGAACATGGGATTAAACTTCAATGAGATCCAGCAGGGACAGACTGATCACCACCATCATATGGGGTTCCAATTTCATCAGATAGGAGGCAATAATATTAACAATTTAAATGGTGGAATATTAGGAGGAGATAACCAGTGGCGCAATTTGAATTTGCAGCAAATTCCATTCTTGGGTGGTTCTGGGTTTGATTCATCACCCTCAACAGGTTTATACCAATTTCAAACTGCTGATCAAGGAGTTGATCATCATCATCAAGCACCGACTGATCCTATGGCTGCTAATAATTCTAGGGTTAATAATACTGATGATCACCTGCCCCCTCCAGTGAAAGTTGAAGACAATCGTGGGCTTAGTTTGACAAGACCTTCTTTGGGTACTAATATTTCTGAAAACAACAATAATCAGTTCTGGGGTGGCAATTTGAATGCGTGGACAGATTTATCAGGCCTCAACTCTTCTTCCACAAGCCATCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

363

Amino Acids

39.23

Weight (kDa)

8.77

Isoelectric Point (pI)

51.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 930
Acc36I ACCTGC 2 cut(s) 429, 930
AccB1I GGYRCC 2 cut(s) 45, 362
AccB7I CCANNNNNTGG 1 cut(s) 667
AciI CCGC 4 cut(s) 116, 128, 243, 539
AclWI GGATC 3 cut(s) 26, 628, 869
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 2 cut(s) 757, 768
AfaI GTAC 4 cut(s) 79, 160, 466, 985
AfiI CCNNNNNNNGG 5 cut(s) 386, 667, 779, 812, 980
AflIII ACRYGT 1 cut(s) 335
AgsI TTSAA 7 cut(s) 295, 479, 628, 757, 830, 944, 1033
AluBI AGCT 2 cut(s) 109, 605
AluI AGCT 2 cut(s) 109, 605
AlwI GGATC 3 cut(s) 26, 628, 869
Ama87I CYCGRG 3 cut(s) 104, 175, 354
AoxI GGCC 4 cut(s) 148, 172, 567, 1054
ApeKI GCWGC 8 cut(s) 118, 426, 429, 432, 435, 455, 763, 884
ApoI RAATTY 2 cut(s) 757, 768
AspLEI GCGC 1 cut(s) 750
AspS9I GGNCC 3 cut(s) 173, 351, 441
AsuC2I CCSGG 2 cut(s) 176, 177
AsuHPI GGTGA 3 cut(s) 647, 795, 911
AvaI CYCGRG 3 cut(s) 104, 175, 354
AvaII GGWCC 2 cut(s) 351, 441
AxyI CCTNAGG 1 cut(s) 368
BaeGI GKGCMC 1 cut(s) 367
BalI TGGCCA 1 cut(s) 150
BanI GGYRCC 2 cut(s) 45, 362
BanII GRGCYC 2 cut(s) 182, 214
BarI GAAGNNNNNNTAC 2 cut(s) 67, 99
BbsI GAAGAC 1 cut(s) 951
BbvI GCAGC 8 cut(s) 105, 438, 441, 444, 447, 467, 775, 871
BccI CCATC 3 cut(s) 191, 669, 1086
BclI TGATCA 5 cut(s) 499, 652, 838, 850, 916
BcnI CCSGG 2 cut(s) 176, 177
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 1 cut(s) 301
BfuAI ACCTGC 2 cut(s) 429, 930
BglI GCCNNNNNGGC 1 cut(s) 218
BisI GCNGC 9 cut(s) 119, 128, 427, 430, 433, 436, 456, 764, 885
BlsI GCNGC 9 cut(s) 120, 129, 428, 431, 434, 437, 457, 765, 886
BmcAI AGTACT 2 cut(s) 79, 160
Bme1390I CCNGG 2 cut(s) 176, 177
Bme18I GGWCC 2 cut(s) 351, 441
BmeT110I CYCGRG 3 cut(s) 104, 175, 354
BmgT120I GGNCC 3 cut(s) 173, 351, 441
BmiI GGNNCC 6 cut(s) 47, 181, 353, 364, 487, 674
BmrFI CCNGG 2 cut(s) 176, 177
BmrI ACTGGG 2 cut(s) 80, 186
BmuI ACTGGG 2 cut(s) 80, 186
BpiI GAAGAC 1 cut(s) 951
BpmI CTGGAG 2 cut(s) 435, 915
BpuEI CTTGAG 1 cut(s) 233
BpuMI CCSGG 2 cut(s) 176, 177
BsaBI GATNNNNATC 1 cut(s) 855
BsaJI CCNNGG 4 cut(s) 151, 175, 257, 355
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
Bsc4I CCNNNNNNNGG 5 cut(s) 386, 667, 779, 812, 980
Bse1I ACTGG 9 cut(s) 20, 75, 91, 166, 192, 353, 380, 742, 932
Bse21I CCTNAGG 1 cut(s) 368
Bse8I GATNNNNATC 1 cut(s) 855
BseDI CCNNGG 4 cut(s) 151, 175, 257, 355
BseGI GGATG 2 cut(s) 64, 398
BseJI GATNNNNATC 1 cut(s) 855
BseLI CCNNNNNNNGG 5 cut(s) 386, 667, 779, 812, 980
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 9 cut(s) 20, 75, 91, 166, 192, 353, 380, 742, 932
BseRI GAGGAG 3 cut(s) 372, 402, 747
BseSI GKGCMC 1 cut(s) 367
BseXI GCAGC 8 cut(s) 105, 438, 441, 444, 447, 467, 775, 871
BseYI CCCAGC 1 cut(s) 605
BshFI GGCC 4 cut(s) 150, 174, 569, 1056
BshNI GGYRCC 2 cut(s) 45, 362
BsiHKCI CYCGRG 3 cut(s) 104, 175, 354
BsiSI CCGG 1 cut(s) 176
BslFI GGGAC 1 cut(s) 657
BslI CCNNNNNNNGG 5 cut(s) 386, 667, 779, 812, 980
BsmFI GGGAC 1 cut(s) 657
BsmI GAATGC 1 cut(s) 1039
BsnI GGCC 4 cut(s) 150, 174, 569, 1056
BsoBI CYCGRG 3 cut(s) 104, 175, 354
Bsp1286I GDGCHC 3 cut(s) 182, 214, 367
BspACI CCGC 4 cut(s) 116, 128, 243, 539
BspANI GGCC 4 cut(s) 150, 174, 569, 1056
BspCNI CTCAG 1 cut(s) 325
BspLI GGNNCC 6 cut(s) 47, 181, 353, 364, 487, 674
BspMI ACCTGC 2 cut(s) 429, 930
BspPI GGATC 3 cut(s) 26, 628, 869
BspT107I GGYRCC 2 cut(s) 45, 362
BsrI ACTGG 9 cut(s) 20, 75, 91, 166, 192, 353, 380, 742, 932
BssECI CCNNGG 4 cut(s) 151, 175, 257, 355
BssT1I CCWWGG 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 1069
BstDEI CTNAG 3 cut(s) 312, 368, 959
BstF5I GGATG 2 cut(s) 64, 398
BstHHI GCGC 1 cut(s) 750
BstMWI GCNNNNNNNGC 8 cut(s) 115, 124, 127, 218, 327, 426, 432, 435
BstNSI RCATGY 1 cut(s) 339
BstSCI CCNGG 2 cut(s) 174, 175
BstSFI CTRYAG 1 cut(s) 301
BstSLI GKGCMC 1 cut(s) 367
BstV1I GCAGC 8 cut(s) 105, 438, 441, 444, 447, 467, 775, 871
BstV2I GAAGAC 1 cut(s) 951
BstX2I RGATCY 2 cut(s) 31, 633
BstXI CCANNNNNNTGG 1 cut(s) 587
BstYI RGATCY 2 cut(s) 31, 633
Bsu36I CCTNAGG 1 cut(s) 368
BsuRI GGCC 4 cut(s) 150, 174, 569, 1056
BtsCI GGATG 2 cut(s) 64, 398
BtsIMutI CAGTG 3 cut(s) 68, 749, 939
BveI ACCTGC 2 cut(s) 429, 930
CfoI GCGC 1 cut(s) 750
Cfr13I GGNCC 3 cut(s) 173, 351, 441
Cfr9I CCCGGG 1 cut(s) 175
Csp6I GTAC 4 cut(s) 78, 159, 465, 984
CviAII CATG 3 cut(s) 140, 336, 613
CviQI GTAC 4 cut(s) 78, 159, 465, 984
DdeI CTNAG 3 cut(s) 312, 368, 959
DraI TTTAAA 1 cut(s) 714
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 151
Eco147I AGGCCT 1 cut(s) 1056
Eco24I GRGCYC 2 cut(s) 182, 214
Eco47I GGWCC 2 cut(s) 351, 441
Eco81I CCTNAGG 1 cut(s) 368
Eco88I CYCGRG 3 cut(s) 104, 175, 354
EcoT14I CCWWGG 1 cut(s) 151
EcoT38I GRGCYC 2 cut(s) 182, 214
ErhI CCWWGG 1 cut(s) 151
FaeI CATG 3 cut(s) 143, 339, 616
FalI AAGNNNNNCTT 2 cut(s) 961, 993
FaqI GGGAC 1 cut(s) 657
FatI CATG 3 cut(s) 139, 335, 612
FauNDI CATATG 2 cut(s) 507, 666
FbaI TGATCA 5 cut(s) 499, 652, 838, 850, 916
Fnu4HI GCNGC 9 cut(s) 119, 128, 427, 430, 433, 436, 456, 764, 885
FokI GGATG 2 cut(s) 51, 405
FriOI GRGCYC 2 cut(s) 182, 214
Fsp4HI GCNGC 9 cut(s) 119, 128, 427, 430, 433, 436, 456, 764, 885
FspBI CTAG 1 cut(s) 897
GlaI GCGC 1 cut(s) 749
GluI GCNGC 9 cut(s) 119, 128, 427, 430, 433, 436, 456, 764, 885
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 2 cut(s) 435, 915
HaeIII GGCC 4 cut(s) 150, 174, 569, 1056
HapII CCGG 1 cut(s) 176
HhaI GCGC 1 cut(s) 750
Hin1II CATG 3 cut(s) 143, 339, 616
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HinfI GANTC 3 cut(s) 226, 266, 797
HpaII CCGG 1 cut(s) 176
HphI GGTGA 3 cut(s) 647, 795, 911
Hpy166II GTNNAC 2 cut(s) 270, 1041
Hpy188I TCNGA 7 cut(s) 188, 205, 258, 386, 499, 687, 997
Hpy8I GTNNAC 2 cut(s) 270, 1041
HpyAV CCTTC 1 cut(s) 984
HpyCH4IV ACGT 1 cut(s) 592
HpyCH4V TGCA 2 cut(s) 330, 763
HpyF10VI GCNNNNNNNGC 8 cut(s) 115, 124, 127, 218, 327, 426, 432, 435
HpyF3I CTNAG 3 cut(s) 312, 368, 959
HpySE526I ACGT 1 cut(s) 592
Hsp92II CATG 3 cut(s) 143, 339, 616
HspAI GCGC 1 cut(s) 748
Ksp22I TGATCA 5 cut(s) 499, 652, 838, 850, 916
LmnI GCTCC 2 cut(s) 185, 602
Lsp1109I GCAGC 8 cut(s) 105, 438, 441, 444, 447, 467, 775, 871
MaeI CTAG 1 cut(s) 897
MaeII ACGT 1 cut(s) 592
MaeIII GTNAC 2 cut(s) 344, 525
MboII GAAGA 3 cut(s) 956, 1056, 1059
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 31, 633
MhlI GDGCHC 3 cut(s) 182, 214, 367
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 9 cut(s) 40, 677, 709, 751, 757, 768, 824, 892, 1027
MluNI TGGCCA 1 cut(s) 150
MlyI GAGTC 1 cut(s) 275
MmeI TCCRAC 2 cut(s) 364, 513
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 4 cut(s) 620, 705, 713, 903
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 118
MspI CCGG 1 cut(s) 176
MspR9I CCNGG 2 cut(s) 176, 177
MunI CAATTG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 1039
MwoI GCNNNNNNNGC 8 cut(s) 115, 124, 127, 218, 327, 426, 432, 435
NciI CCSGG 2 cut(s) 176, 177
NdeI CATATG 2 cut(s) 507, 666
NlaIII CATG 3 cut(s) 143, 339, 616
NlaIV GGNNCC 6 cut(s) 47, 181, 353, 364, 487, 674
NmuCI GTSAC 1 cut(s) 525
NspI RCATGY 1 cut(s) 339
PaeR7I CTCGAG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 930
PceI AGGCCT 1 cut(s) 1056
PciI ACATGT 1 cut(s) 335
PctI GAATGC 1 cut(s) 1039
PfeI GAWTC 2 cut(s) 226, 797
PflMI CCANNNNNTGG 1 cut(s) 667
PkrI GCNGC 9 cut(s) 120, 129, 428, 431, 434, 437, 457, 765, 886
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PscI ACATGT 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 605
PspN4I GGNNCC 6 cut(s) 47, 181, 353, 364, 487, 674
PspPI GGNCC 3 cut(s) 173, 351, 441
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 2 cut(s) 31, 633
RsaI GTAC 4 cut(s) 79, 160, 466, 985
RsaNI GTAC 4 cut(s) 78, 159, 465, 984
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 4 cut(s) 620, 705, 713, 903
SatI GCNGC 9 cut(s) 119, 128, 427, 430, 433, 436, 456, 764, 885
Sau96I GGNCC 3 cut(s) 173, 351, 441
ScaI AGTACT 2 cut(s) 79, 160
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 2 cut(s) 176, 177
SduI GDGCHC 3 cut(s) 182, 214, 367
SfcI CTRYAG 1 cut(s) 301
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 2 cut(s) 351, 441
SlaI CTCGAG 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 177
SmiI ATTTAAAT 1 cut(s) 714
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 2 cut(s) 104, 248
SmoI CTYRAG 2 cut(s) 104, 248
SrfI GCCCGGGC 1 cut(s) 177
Sse9I AATT 9 cut(s) 40, 677, 709, 751, 757, 768, 824, 892, 1027
SseBI AGGCCT 1 cut(s) 1056
SsiI CCGC 4 cut(s) 116, 128, 243, 539
SspI AATATT 3 cut(s) 703, 726, 991
SspMI CTAG 1 cut(s) 897
StuI AGGCCT 1 cut(s) 1056
StyD4I CCNGG 2 cut(s) 174, 175
StyI CCWWGG 1 cut(s) 151
SwaI ATTTAAAT 1 cut(s) 714
TaiI ACGT 1 cut(s) 595
TaqI TCGA 3 cut(s) 105, 197, 208
TasI AATT 9 cut(s) 40, 677, 709, 751, 757, 768, 824, 892, 1027
TatI WGTACW 2 cut(s) 77, 158
TauI GCSGC 1 cut(s) 130
TfiI GAWTC 2 cut(s) 226, 797
Tru1I TTAA 4 cut(s) 620, 705, 713, 903
Tru9I TTAA 4 cut(s) 620, 705, 713, 903
TscAI CASTG 3 cut(s) 75, 749, 939
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 8 cut(s) 118, 426, 429, 432, 435, 455, 763, 884
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 3 cut(s) 108, 671, 789
TspMI CCCGGG 1 cut(s) 175
TspRI CASTG 3 cut(s) 75, 749, 939
Van91I CCANNNNNTGG 1 cut(s) 667
VpaK11BI GGWCC 2 cut(s) 351, 441
XapI RAATTY 2 cut(s) 757, 768
XceI RCATGY 1 cut(s) 339
XcmI CCANNNNNNNNNTGG 1 cut(s) 158
XhoI CTCGAG 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 175
XspI CTAG 1 cut(s) 897
ZrmI AGTACT 2 cut(s) 79, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.