MD03G1096400.v1.1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011693
Physical Location & Seq
Reverse (-)
8185366 .. 8187273
1908 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1096400.v1.1.491

Sequence Viewer

Length: 1119 bp
ATGGTTTTCTCATCTATTCCAGTCTATTTAGATCCTCCCAATTGGCACCAGCAACCAAATCATCATCCACTAGGAAGTACTACTACTGGAAGTGAAAATCCACATGAGCTTCCACCACTGCCTCCACCACCGTCAGTAACTCATGTTGGTGGTGCAGCCAATATTGGTGGTGGTGGAGGCCCAGGCTCCATCAGACCCAGTTCGATGTCTGATCGAGCCCGTCTGGCAAAGATTCCACAACCAGAAACCGCGCTCAAGTGTCCGCGGTGTGAGTCCACCAACACCAAGTTTTGCTATTTCAACAACTACAGCCTCAGTCAGCCTCGCCACTTCTGCAAAACATGTAGGCGTTATTGGACCCGAGGAGGTTCCCTAAGGAACGTTCCCGTGGGAGGAGGATGTCGTCGAAACAAGAAAAGCAAAAGCAACAACAGCAGCAACAGCAGTCGATCCAAATCTCCAGTAGCCACTGGCGATCATATCCAAACAGGTTCCAACTCAATTACCAACAACTCATCAGATCATATGATTGGTAATATTACTCATCATTTTTCAAACCTTCCACCGAGTACTCATCAATCACTACCATTTCTAGCATCATCCATACAAAGTCTAGGTCGTTATGGTGGTGCTGGGAACATGGGATTGAACTTCAATGAGATCCAGCAGGAAGAGACTGATCATCACCATCATCATATGGGGTTTCAATTTCATCAGATTGCAGGAGGCAATAATATGAACAATTTAAGTGGTGGAATATTAGGAGGGGGTCATAATAATCAGTGGCGTAATTTGAACTTGCAGCATATTCCATTCTTGGGCGGTACCGGGTTCGAATCATCAACATCAACAGGTTTATACCCATTTCAAACTGGTGATCTAGGAGTCGATCATCAAGCATCAACCCATCCAATGGTTGGGAATAATTCTAGGATTAGTACTGAGCAGTTGCCCCCTCCAGTGAAGACTGAAGATAATCATGGTCTTAGTTTGACGAGACCTTCTTTGGGTACTGCTATTTCACCTGAAATTAACAATAGCCAGTTCTGGGGTGGAAATTTGAATGCGTGGACAGATTTATCAGGACTCAACTCTTCTTCCACAAGCCATCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

373

Amino Acids

40.05

Weight (kDa)

8.94

Isoelectric Point (pI)

54.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 84 - 139 6.7e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 824
AccB1I GGYRCC 2 cut(s) 45, 824
AccB7I CCANNNNNTGG 2 cut(s) 913, 917
AccII CGCG 2 cut(s) 251, 265
AciI CCGC 4 cut(s) 249, 263, 265, 822
AclI AACGTT 1 cut(s) 381
AclWI GGATC 3 cut(s) 26, 444, 655
AcsI RAATTY 1 cut(s) 1057
AcuI CTGAAG 1 cut(s) 990
AfaI GTAC 5 cut(s) 79, 571, 826, 940, 1012
AfiI CCNNNNNNNGG 6 cut(s) 392, 818, 913, 917, 1007, 1048
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 8 cut(s) 301, 555, 649, 655, 707, 796, 869, 1063
AjnI CCWGG 1 cut(s) 181
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 668, 991
AlwI GGATC 3 cut(s) 26, 444, 655
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 3 cut(s) 155, 435, 802
ApoI RAATTY 1 cut(s) 1057
ArsI GACNNNNNNTTYG 2 cut(s) 601, 633
Asp718I GGTACC 1 cut(s) 824
AspLEI GCGC 1 cut(s) 253
AspS9I GGNCC 2 cut(s) 179, 357
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 3 cut(s) 677, 887, 1014
AsuII TTCGAA 1 cut(s) 834
AvaI CYCGRG 1 cut(s) 360
AvaII GGWCC 1 cut(s) 357
AxyI CCTNAGG 1 cut(s) 374
BanI GGYRCC 2 cut(s) 45, 824
BanII GRGCYC 1 cut(s) 220
BarI GAAGNNNNNNTAC 2 cut(s) 67, 99
BbsI GAAGAC 1 cut(s) 971
BbvI GCAGC 3 cut(s) 167, 447, 814
BccI CCATC 4 cut(s) 197, 696, 915, 1116
BciT130I CCWGG 1 cut(s) 183
BclI TGATCA 1 cut(s) 679
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 2 cut(s) 668, 991
BfaI CTAG 5 cut(s) 71, 593, 614, 881, 930
BfmI CTRYAG 1 cut(s) 307
BglI GCCNNNNNGGC 1 cut(s) 224
BisI GCNGC 3 cut(s) 156, 436, 803
BlsI GCNGC 3 cut(s) 157, 437, 804
BmcAI AGTACT 3 cut(s) 79, 571, 940
Bme1390I CCNGG 2 cut(s) 183, 829
Bme18I GGWCC 1 cut(s) 357
BmeT110I CYCGRG 1 cut(s) 360
BmgT120I GGNCC 2 cut(s) 179, 357
BmiI GGNNCC 6 cut(s) 47, 187, 359, 370, 493, 826
BmrFI CCNGG 2 cut(s) 183, 829
BmrI ACTGGG 1 cut(s) 192
BmsI GCATC 2 cut(s) 605, 908
BmuI ACTGGG 1 cut(s) 192
BpiI GAAGAC 1 cut(s) 971
BpmI CTGGAG 2 cut(s) 444, 942
Bpu14I TTCGAA 1 cut(s) 834
BpuEI CTTGAG 1 cut(s) 239
BpuMI CCSGG 1 cut(s) 829
BsaBI GATNNNNATC 1 cut(s) 454
BsaI GGTCTC 1 cut(s) 991
BsaJI CCNNGG 4 cut(s) 181, 263, 361, 387
Bsc4I CCNNNNNNNGG 6 cut(s) 392, 818, 913, 917, 1007, 1048
Bse1I ACTGG 8 cut(s) 20, 91, 198, 461, 475, 877, 959, 1042
Bse21I CCTNAGG 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 454
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 4 cut(s) 181, 263, 361, 387
BseGI GGATG 4 cut(s) 64, 404, 599, 907
BseJI GATNNNNATC 1 cut(s) 454
BseLI CCNNNNNNNGG 6 cut(s) 392, 818, 913, 917, 1007, 1048
BseMII CTCAG 2 cut(s) 328, 933
BseNI ACTGG 8 cut(s) 20, 91, 198, 461, 475, 877, 959, 1042
BseRI GAGGAG 2 cut(s) 378, 408
BseXI GCAGC 3 cut(s) 167, 447, 814
BseYI CCCAGC 1 cut(s) 632
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 2 cut(s) 251, 265
BshFI GGCC 1 cut(s) 180
BshNI GGYRCC 2 cut(s) 45, 824
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 1 cut(s) 828
BslI CCNNNNNNNGG 6 cut(s) 392, 818, 913, 917, 1007, 1048
BsmAI GTCTC 2 cut(s) 668, 991
BsmI GAATGC 1 cut(s) 1069
BsnI GGCC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 991
BsoBI CYCGRG 1 cut(s) 360
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
BspACI CCGC 4 cut(s) 249, 263, 265, 822
BspANI GGCC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 327, 934
BspFNI CGCG 2 cut(s) 251, 265
BspLI GGNNCC 6 cut(s) 47, 187, 359, 370, 493, 826
BspPI GGATC 3 cut(s) 26, 444, 655
BspT104I TTCGAA 1 cut(s) 834
BspT107I GGYRCC 2 cut(s) 45, 824
BspTNI GGTCTC 1 cut(s) 991
BsrI ACTGG 8 cut(s) 20, 91, 198, 461, 475, 877, 959, 1042
BssECI CCNNGG 4 cut(s) 181, 263, 361, 387
BssMI GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 2 cut(s) 666, 1099
BstBI TTCGAA 1 cut(s) 834
BstDEI CTNAG 4 cut(s) 314, 374, 942, 986
BstDSI CCRYGG 2 cut(s) 263, 387
BstF5I GGATG 4 cut(s) 64, 404, 599, 907
BstFNI CGCG 2 cut(s) 251, 265
BstHHI GCGC 1 cut(s) 253
BstKTI GATC 9 cut(s) 34, 214, 452, 478, 523, 663, 682, 880, 892
BstMAI GTCTC 2 cut(s) 668, 991
BstMBI GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
BstMWI GCNNNNNNNGC 4 cut(s) 224, 333, 432, 441
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 345
BstSCI CCNGG 2 cut(s) 181, 827
BstSFI CTRYAG 1 cut(s) 307
BstUI CGCG 2 cut(s) 251, 265
BstV1I GCAGC 3 cut(s) 167, 447, 814
BstV2I GAAGAC 1 cut(s) 971
BstX2I RGATCY 2 cut(s) 31, 660
BstYI RGATCY 2 cut(s) 31, 660
Bsu36I CCTNAGG 1 cut(s) 374
BsuRI GGCC 1 cut(s) 180
BtgI CCRYGG 2 cut(s) 263, 387
BtsCI GGATG 4 cut(s) 64, 404, 599, 907
BtsI GCAGTG 1 cut(s) 116
BtsIMutI CAGTG 4 cut(s) 116, 468, 788, 966
CfoI GCGC 1 cut(s) 253
Cfr13I GGNCC 2 cut(s) 179, 357
Cfr42I CCGCGG 1 cut(s) 266
Csp6I GTAC 5 cut(s) 78, 570, 825, 939, 1011
CspCI CAANNNNNGTGG 4 cut(s) 148, 183, 730, 765
CviAII CATG 5 cut(s) 104, 143, 342, 640, 980
CviQI GTAC 5 cut(s) 78, 570, 825, 939, 1011
DdeI CTNAG 4 cut(s) 314, 374, 942, 986
DpnI GATC 9 cut(s) 33, 213, 451, 477, 522, 662, 681, 879, 891
DpnII GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
Eam1104I CTCTTC 2 cut(s) 666, 1099
EarI CTCTTC 2 cut(s) 666, 1099
Eco24I GRGCYC 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 991
Eco47I GGWCC 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 990
Eco81I CCTNAGG 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 360
EcoRII CCWGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 220
FaeI CATG 5 cut(s) 107, 146, 345, 643, 983
FatI CATG 5 cut(s) 103, 142, 341, 639, 979
FauNDI CATATG 2 cut(s) 525, 696
FbaI TGATCA 1 cut(s) 679
Fnu4HI GCNGC 3 cut(s) 156, 436, 803
FokI GGATG 4 cut(s) 51, 411, 586, 894
FriOI GRGCYC 1 cut(s) 220
Fsp4HI GCNGC 3 cut(s) 156, 436, 803
FspBI CTAG 5 cut(s) 71, 593, 614, 881, 930
GlaI GCGC 1 cut(s) 252
GluI GCNGC 3 cut(s) 156, 436, 803
GsaI CCCAGC 1 cut(s) 636
GsuI CTGGAG 2 cut(s) 444, 942
HaeIII GGCC 1 cut(s) 180
HapII CCGG 1 cut(s) 828
HhaI GCGC 1 cut(s) 253
Hin1II CATG 5 cut(s) 107, 146, 345, 643, 983
Hin6I GCGC 1 cut(s) 251
HinP1I GCGC 1 cut(s) 251
HinfI GANTC 5 cut(s) 232, 272, 836, 885, 1086
HpaII CCGG 1 cut(s) 828
HphI GGTGA 3 cut(s) 677, 887, 1014
Hpy166II GTNNAC 2 cut(s) 276, 1071
Hpy188I TCNGA 4 cut(s) 194, 211, 520, 717
Hpy188III TCNNGA 1 cut(s) 1083
Hpy8I GTNNAC 2 cut(s) 276, 1071
Hpy99I CGWCG 1 cut(s) 408
HpyAV CCTTC 2 cut(s) 569, 1011
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 4 cut(s) 155, 336, 722, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 333, 432, 441
HpyF3I CTNAG 4 cut(s) 314, 374, 942, 986
HpySE526I ACGT 1 cut(s) 381
Hsp92II CATG 5 cut(s) 107, 146, 345, 643, 983
HspAI GCGC 1 cut(s) 251
KpnI GGTACC 1 cut(s) 828
Ksp22I TGATCA 1 cut(s) 679
KspI CCGCGG 1 cut(s) 266
Kzo9I GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
LmnI GCTCC 1 cut(s) 191
Lsp1109I GCAGC 3 cut(s) 167, 447, 814
LweI GCATC 2 cut(s) 605, 908
MaeI CTAG 5 cut(s) 71, 593, 614, 881, 930
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 1 cut(s) 136
MalI GATC 9 cut(s) 33, 213, 451, 477, 522, 662, 681, 879, 891
MboI GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
MboII GAAGA 5 cut(s) 683, 976, 983, 1086, 1089
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 31, 660
MhlI GDGCHC 1 cut(s) 220
MluCI AATT 8 cut(s) 40, 501, 707, 742, 790, 925, 1029, 1057
MlyI GAGTC 3 cut(s) 281, 894, 1080
MmeI TCCRAC 1 cut(s) 519
MseI TTAA 2 cut(s) 746, 1032
MslI CAYNNNNRTG 1 cut(s) 147
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 2 cut(s) 183, 829
MunI CAATTG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 1069
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 2 cut(s) 251, 265
MwoI GCNNNNNNNGC 4 cut(s) 224, 333, 432, 441
NciI CCSGG 1 cut(s) 829
NdeI CATATG 2 cut(s) 525, 696
NdeII GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
NlaIII CATG 5 cut(s) 107, 146, 345, 643, 983
NlaIV GGNNCC 6 cut(s) 47, 187, 359, 370, 493, 826
NspI RCATGY 1 cut(s) 345
NspV TTCGAA 1 cut(s) 834
PciI ACATGT 1 cut(s) 341
PctI GAATGC 1 cut(s) 1069
PfeI GAWTC 2 cut(s) 232, 836
PflMI CCANNNNNTGG 2 cut(s) 913, 917
PkrI GCNGC 3 cut(s) 157, 437, 804
PleI GAGTC 3 cut(s) 280, 893, 1080
PpsI GAGTC 3 cut(s) 280, 893, 1080
PscI ACATGT 1 cut(s) 341
Psp1406I AACGTT 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 632
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 6 cut(s) 47, 187, 359, 370, 493, 826
PspPI GGNCC 2 cut(s) 179, 357
PsuI RGATCY 2 cut(s) 31, 660
RsaI GTAC 5 cut(s) 79, 571, 826, 940, 1012
RsaNI GTAC 5 cut(s) 78, 570, 825, 939, 1011
RseI CAYNNNNRTG 1 cut(s) 147
SacII CCGCGG 1 cut(s) 266
SaqAI TTAA 2 cut(s) 746, 1032
SatI GCNGC 3 cut(s) 156, 436, 803
Sau3AI GATC 9 cut(s) 31, 211, 449, 475, 520, 660, 679, 877, 889
Sau96I GGNCC 2 cut(s) 179, 357
ScaI AGTACT 3 cut(s) 79, 571, 940
SchI GAGTC 3 cut(s) 281, 894, 1080
ScrFI CCNGG 2 cut(s) 183, 829
SduI GDGCHC 1 cut(s) 220
SetI ASST 9 cut(s) 111, 370, 384, 493, 561, 619, 856, 1003, 1027
SfaNI GCATC 2 cut(s) 605, 908
SfcI CTRYAG 1 cut(s) 307
Sfr303I CCGCGG 1 cut(s) 266
SfuI TTCGAA 1 cut(s) 834
SgrBI CCGCGG 1 cut(s) 266
SinI GGWCC 1 cut(s) 357
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 8 cut(s) 40, 501, 707, 742, 790, 925, 1029, 1057
SsiI CCGC 4 cut(s) 249, 263, 265, 822
SspI AATATT 3 cut(s) 163, 538, 759
SspMI CTAG 5 cut(s) 71, 593, 614, 881, 930
StyD4I CCNGG 2 cut(s) 181, 827
TaaI ACNGT 1 cut(s) 132
TaiI ACGT 1 cut(s) 384
TaqI TCGA 6 cut(s) 203, 214, 406, 448, 834, 888
TasI AATT 8 cut(s) 40, 501, 707, 742, 790, 925, 1029, 1057
TatI WGTACW 3 cut(s) 77, 569, 938
TfiI GAWTC 2 cut(s) 232, 836
Tru1I TTAA 2 cut(s) 746, 1032
Tru9I TTAA 2 cut(s) 746, 1032
TscAI CASTG 4 cut(s) 123, 475, 788, 966
TseI GCWGC 3 cut(s) 155, 435, 802
TspDTI ATGAA 2 cut(s) 701, 752
TspRI CASTG 4 cut(s) 123, 475, 788, 966
Van91I CCANNNNNTGG 2 cut(s) 913, 917
VpaK11BI GGWCC 1 cut(s) 357
XapI RAATTY 1 cut(s) 1057
XceI RCATGY 1 cut(s) 345
XcmI CCANNNNNNNNNTGG 2 cut(s) 914, 1049
XspI CTAG 5 cut(s) 71, 593, 614, 881, 930
ZrmI AGTACT 3 cut(s) 79, 571, 940
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.