MD11G1111100.v1.1

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0011693
Physical Location & Seq
Reverse (-)
9836381 .. 9838175
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1111100.v1.1.491

Sequence Viewer

Length: 1128 bp
ATGGTTTTCTCATCTATTCCAGTTTATGTAGATCCTCCCAATTGGCACCAGCAACCAAATCATCATCCATTAGGAGGTACTACTGCTGGAAGTGAAAATCCACATGAACTTCCACCACTCCCTCCACCACCGTCACTAACTCATGTCTGTGGTGCAGGCAGTATTAGTGGTGTTGGTGGTGGTGGTGGCGGCCCAGGCTCCATCAGACCCAGCTCGATGTCTGATCGAGCCCGTCTGGCAAAGATTCCACAACCAGAAACCGCGCTCAAGTGTCCTCGGTGTGAGTCCACTAACACCAAGTTTTGCTACTTCAATAACTACAGCCTCACTCAGCCTCGCCACTTCTGCAAGACATGTCGGCGTTATTGGACCCGAGGAGGTGCCCTAAGGAGCGTTCCTGTTGGAGGAGGATGTCGCCGAAACAAGAAAACTAAAAGCAACAGCAGCAGCAGCAGCAGTCGATCCAAATCTCCAGTAGCCACTGGCGATCATATCCAAACAGGTTCCAACTCAATTACCAACAACTCATCAAATCATATGATGGGCAATACTCCTCATCTTTTGTCACAACTACCACCAAGTACTCATCAATCACTACCATTTCTAGCCTCATCCATACCAAGTCTAGGTCGTTATGGAGCTGGGAACATGGGATTAAACTTCAATGAGATCCAGCAGGAACAGACTGATCATCACCAACATCATATGGGGTTTCAATTTCATCAGATTGCAGGAGGCAATAATATGAACAATTTAAGTGGTGGAATATTAGGAGGGGATCATAATAATCAGTGGCGTAATTCGAACTTGCAGCAAATTCCATTTTTGGGCGGTACCGGGTTTGAATCATCAACATCAACAGGTTTATACCCATTTCAAACGGGTGATCAAGGAGTCGATCATCAAGCAACAACTGATCCAATGGTTGGGAATAATTCTAGGGTTAATACTGAGCAGTTGCCTCCTCCAGTGAAAACTGAAGATAATCATGGTCTTACTTTAACAAGACCTTCTTTGGGTACTACTATTTTAGCTGAAACTAACAATAGCCAGTTCTGGGGTGGAAATTTGAATGCGTGGACAGATTTATCAGGGCTCAACTCTTCTTCCACAAGCCATCTCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

376

Amino Acids

40.16

Weight (kDa)

8.87

Isoelectric Point (pI)

49.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 88 - 143 3.9e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 833
AccB1I GGYRCC 3 cut(s) 45, 380, 833
AccB7I CCANNNNNTGG 1 cut(s) 926
AccII CGCG 1 cut(s) 263
AciI CCGC 3 cut(s) 189, 261, 831
AclWI GGATC 5 cut(s) 26, 456, 664, 786, 911
AcsI RAATTY 2 cut(s) 816, 1066
AcuI CTGAAG 1 cut(s) 999
AfaI GTAC 4 cut(s) 79, 583, 835, 1021
AfiI CCNNNNNNNGG 7 cut(s) 74, 404, 626, 827, 926, 1016, 1057
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 6 cut(s) 313, 664, 716, 845, 878, 1072
AjnI CCWGG 1 cut(s) 193
AluBI AGCT 3 cut(s) 213, 641, 1034
AluI AGCT 3 cut(s) 213, 641, 1034
AlwI GGATC 5 cut(s) 26, 456, 664, 786, 911
Ama87I CYCGRG 1 cut(s) 372
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 5 cut(s) 444, 447, 450, 453, 811
ApoI RAATTY 2 cut(s) 816, 1066
Asp718I GGTACC 1 cut(s) 833
AspLEI GCGC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 191, 369
AsuC2I CCSGG 1 cut(s) 838
AsuHPI GGTGA 2 cut(s) 686, 896
AsuII TTCGAA 1 cut(s) 803
AvaI CYCGRG 1 cut(s) 372
AvaII GGWCC 1 cut(s) 369
AxyI CCTNAGG 1 cut(s) 386
BaeGI GKGCMC 1 cut(s) 385
BanI GGYRCC 3 cut(s) 45, 380, 833
BanII GRGCYC 2 cut(s) 232, 1098
BbvI GCAGC 5 cut(s) 456, 459, 462, 465, 823
BccI CCATC 3 cut(s) 209, 535, 1125
BciT130I CCWGG 1 cut(s) 195
BclI TGATCA 2 cut(s) 688, 886
BcnI CCSGG 1 cut(s) 838
BfaI CTAG 3 cut(s) 605, 626, 939
BfmI CTRYAG 1 cut(s) 319
BglI GCCNNNNNGGC 1 cut(s) 236
BisI GCNGC 6 cut(s) 190, 445, 448, 451, 454, 812
BlsI GCNGC 6 cut(s) 191, 446, 449, 452, 455, 813
BmcAI AGTACT 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 195, 838
Bme18I GGWCC 1 cut(s) 369
BmeT110I CYCGRG 1 cut(s) 372
BmgT120I GGNCC 2 cut(s) 191, 369
BmiI GGNNCC 6 cut(s) 47, 199, 371, 382, 505, 835
BmrFI CCNGG 2 cut(s) 195, 838
BpmI CTGGAG 2 cut(s) 456, 951
Bpu14I TTCGAA 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 1 cut(s) 838
BsaBI GATNNNNATC 1 cut(s) 466
BsaJI CCNNGG 3 cut(s) 193, 275, 373
Bsc4I CCNNNNNNNGG 7 cut(s) 74, 404, 626, 827, 926, 1016, 1057
Bse1I ACTGG 5 cut(s) 20, 473, 487, 968, 1051
Bse21I CCTNAGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 466
BseBI CCWGG 1 cut(s) 195
BseDI CCNNGG 3 cut(s) 193, 275, 373
BseGI GGATG 3 cut(s) 64, 416, 611
BseJI GATNNNNATC 1 cut(s) 466
BseLI CCNNNNNNNGG 7 cut(s) 74, 404, 626, 827, 926, 1016, 1057
BseMII CTCAG 2 cut(s) 344, 942
BseNI ACTGG 5 cut(s) 20, 473, 487, 968, 1051
BseRI GAGGAG 4 cut(s) 390, 420, 543, 954
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 5 cut(s) 456, 459, 462, 465, 823
BseYI CCCAGC 2 cut(s) 209, 641
BsgI GTGCAG 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 263
BshFI GGCC 1 cut(s) 192
BshNI GGYRCC 3 cut(s) 45, 380, 833
BsiHKCI CYCGRG 1 cut(s) 372
BsiSI CCGG 1 cut(s) 837
BslI CCNNNNNNNGG 7 cut(s) 74, 404, 626, 827, 926, 1016, 1057
BsmI GAATGC 1 cut(s) 1078
BsnI GGCC 1 cut(s) 192
BsoBI CYCGRG 1 cut(s) 372
Bsp119I TTCGAA 1 cut(s) 803
Bsp1286I GDGCHC 3 cut(s) 232, 385, 1098
BspACI CCGC 3 cut(s) 189, 261, 831
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 343, 943
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 6 cut(s) 47, 199, 371, 382, 505, 835
BspPI GGATC 5 cut(s) 26, 456, 664, 786, 911
BspT104I TTCGAA 1 cut(s) 803
BspT107I GGYRCC 3 cut(s) 45, 380, 833
BsrI ACTGG 5 cut(s) 20, 473, 487, 968, 1051
BssECI CCNNGG 3 cut(s) 193, 275, 373
Bst2UI CCWGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 1108
BstBI TTCGAA 1 cut(s) 803
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 330, 386, 951
BstENI CCTNNNNNAGG 1 cut(s) 402
BstF5I GGATG 3 cut(s) 64, 416, 611
BstFNI CGCG 1 cut(s) 263
BstHHI GCGC 1 cut(s) 265
BstMWI GCNNNNNNNGC 6 cut(s) 195, 236, 345, 444, 450, 453
BstNI CCWGG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 193, 836
BstSFI CTRYAG 1 cut(s) 319
BstSLI GKGCMC 1 cut(s) 385
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 5 cut(s) 456, 459, 462, 465, 823
BstX2I RGATCY 2 cut(s) 31, 669
BstYI RGATCY 2 cut(s) 31, 669
Bsu36I CCTNAGG 1 cut(s) 386
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 3 cut(s) 64, 416, 611
BtsIMutI CAGTG 3 cut(s) 480, 797, 975
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 191, 369
Csp6I GTAC 4 cut(s) 78, 582, 834, 1020
CspCI CAANNNNNGTGG 2 cut(s) 739, 774
CviAII CATG 5 cut(s) 104, 143, 354, 649, 989
CviQI GTAC 4 cut(s) 78, 582, 834, 1020
DdeI CTNAG 3 cut(s) 330, 386, 951
Eam1104I CTCTTC 1 cut(s) 1108
EarI CTCTTC 1 cut(s) 1108
Eco24I GRGCYC 2 cut(s) 232, 1098
Eco47I GGWCC 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 999
Eco81I CCTNAGG 1 cut(s) 386
Eco88I CYCGRG 1 cut(s) 372
EcoNI CCTNNNNNAGG 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 193
EcoT38I GRGCYC 2 cut(s) 232, 1098
FaeI CATG 5 cut(s) 107, 146, 357, 652, 992
FalI AAGNNNNNCTT 2 cut(s) 997, 1029
FatI CATG 5 cut(s) 103, 142, 353, 648, 988
FauNDI CATATG 2 cut(s) 537, 705
FbaI TGATCA 2 cut(s) 688, 886
Fnu4HI GCNGC 6 cut(s) 190, 445, 448, 451, 454, 812
FokI GGATG 3 cut(s) 51, 423, 598
FriOI GRGCYC 2 cut(s) 232, 1098
Fsp4HI GCNGC 6 cut(s) 190, 445, 448, 451, 454, 812
FspBI CTAG 3 cut(s) 605, 626, 939
GlaI GCGC 1 cut(s) 264
GluI GCNGC 6 cut(s) 190, 445, 448, 451, 454, 812
GsaI CCCAGC 2 cut(s) 213, 645
GsuI CTGGAG 2 cut(s) 456, 951
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 837
HhaI GCGC 1 cut(s) 265
Hin1II CATG 5 cut(s) 107, 146, 357, 652, 992
Hin6I GCGC 1 cut(s) 263
HinP1I GCGC 1 cut(s) 263
HinfI GANTC 4 cut(s) 244, 284, 845, 894
HpaII CCGG 1 cut(s) 837
HphI GGTGA 2 cut(s) 686, 896
Hpy166II GTNNAC 2 cut(s) 288, 1080
Hpy188I TCNGA 3 cut(s) 206, 223, 726
Hpy8I GTNNAC 2 cut(s) 288, 1080
HpyAV CCTTC 1 cut(s) 1020
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 4 cut(s) 155, 348, 731, 811
HpyF10VI GCNNNNNNNGC 6 cut(s) 195, 236, 345, 444, 450, 453
HpyF3I CTNAG 3 cut(s) 330, 386, 951
Hsp92II CATG 5 cut(s) 107, 146, 357, 652, 992
HspAI GCGC 1 cut(s) 263
KpnI GGTACC 1 cut(s) 837
Ksp22I TGATCA 2 cut(s) 688, 886
LmnI GCTCC 3 cut(s) 203, 390, 638
Lsp1109I GCAGC 5 cut(s) 456, 459, 462, 465, 823
MaeI CTAG 3 cut(s) 605, 626, 939
MaeIII GTNAC 2 cut(s) 132, 564
MboII GAAGA 3 cut(s) 992, 1095, 1098
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 31, 669
MhlI GDGCHC 3 cut(s) 232, 385, 1098
MluCI AATT 8 cut(s) 40, 513, 716, 751, 799, 816, 934, 1066
MlyI GAGTC 2 cut(s) 293, 903
MmeI TCCRAC 2 cut(s) 382, 531
MseI TTAA 4 cut(s) 656, 755, 945, 1001
MslI CAYNNNNRTG 1 cut(s) 147
MspI CCGG 1 cut(s) 837
MspR9I CCNGG 2 cut(s) 195, 838
MunI CAATTG 1 cut(s) 40
Mva1269I GAATGC 1 cut(s) 1078
MvaI CCWGG 1 cut(s) 195
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 6 cut(s) 195, 236, 345, 444, 450, 453
NciI CCSGG 1 cut(s) 838
NdeI CATATG 2 cut(s) 537, 705
NlaIII CATG 5 cut(s) 107, 146, 357, 652, 992
NlaIV GGNNCC 6 cut(s) 47, 199, 371, 382, 505, 835
NmuCI GTSAC 2 cut(s) 132, 564
NspI RCATGY 1 cut(s) 357
NspV TTCGAA 1 cut(s) 803
PciI ACATGT 1 cut(s) 353
PctI GAATGC 1 cut(s) 1078
PfeI GAWTC 2 cut(s) 244, 845
PflMI CCANNNNNTGG 1 cut(s) 926
PkrI GCNGC 6 cut(s) 191, 446, 449, 452, 455, 813
PleI GAGTC 2 cut(s) 292, 902
PpsI GAGTC 2 cut(s) 292, 902
PscI ACATGT 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 193
PspFI CCCAGC 2 cut(s) 209, 641
PspGI CCWGG 1 cut(s) 193
PspN4I GGNNCC 6 cut(s) 47, 199, 371, 382, 505, 835
PspPI GGNCC 2 cut(s) 191, 369
PsuI RGATCY 2 cut(s) 31, 669
RsaI GTAC 4 cut(s) 79, 583, 835, 1021
RsaNI GTAC 4 cut(s) 78, 582, 834, 1020
RseI CAYNNNNRTG 1 cut(s) 147
SaqAI TTAA 4 cut(s) 656, 755, 945, 1001
SatI GCNGC 6 cut(s) 190, 445, 448, 451, 454, 812
Sau96I GGNCC 2 cut(s) 191, 369
ScaI AGTACT 1 cut(s) 583
SchI GAGTC 2 cut(s) 293, 903
ScrFI CCNGG 2 cut(s) 195, 838
SduI GDGCHC 3 cut(s) 232, 385, 1098
SetI ASST 9 cut(s) 79, 215, 382, 505, 631, 643, 865, 1012, 1036
SfcI CTRYAG 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 803
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 1 cut(s) 147
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 8 cut(s) 40, 513, 716, 751, 799, 816, 934, 1066
SsiI CCGC 3 cut(s) 189, 261, 831
SspI AATATT 1 cut(s) 768
SspMI CTAG 3 cut(s) 605, 626, 939
StyD4I CCNGG 2 cut(s) 193, 836
TaaI ACNGT 1 cut(s) 132
TaqI TCGA 5 cut(s) 215, 226, 460, 803, 897
TasI AATT 8 cut(s) 40, 513, 716, 751, 799, 816, 934, 1066
TatI WGTACW 1 cut(s) 581
TauI GCSGC 1 cut(s) 192
TfiI GAWTC 2 cut(s) 244, 845
Tru1I TTAA 4 cut(s) 656, 755, 945, 1001
Tru9I TTAA 4 cut(s) 656, 755, 945, 1001
TscAI CASTG 3 cut(s) 487, 797, 975
TseFI GTSAC 2 cut(s) 132, 564
TseI GCWGC 5 cut(s) 444, 447, 450, 453, 811
Tsp45I GTSAC 2 cut(s) 132, 564
TspDTI ATGAA 3 cut(s) 120, 710, 761
TspRI CASTG 3 cut(s) 487, 797, 975
Van91I CCANNNNNTGG 1 cut(s) 926
VpaK11BI GGWCC 1 cut(s) 369
XagI CCTNNNNNAGG 1 cut(s) 402
XapI RAATTY 2 cut(s) 816, 1066
XceI RCATGY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 1058
XspI CTAG 3 cut(s) 605, 626, 939
ZrmI AGTACT 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.