Rh5DG448900

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0011693
Physical Location & Seq
Reverse (-)
71603782 .. 71605811
2030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG448900.1

Sequence Viewer

Length: 1068 bp
ATGGTTTTCTCATCTATTCCAGTCTATTTAGATCCTCCCAATTGGCACCAGCAACCAAATCATCCCCTAGGAAGTGGAAGTACCGAAAATCATCCACAGCTTCCACCACTGCCTCCACGGCAGTTCGGCACTCATGTCGGCGGCGGCGGTGGTACTGATGGTAGTGGTGGAAGTGGTACGGGCTCCATCAGACCCAACTCCATGGCTGATCGAGCCCGGCTGGCCAAGATGCCTCAACCAGAGACCGCACTCAAGTGTCCACGGTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACGTGCCGCCGTTACTGGACAAGAGGGGGTGCCCTTAGAAATGTTCCGGTGGGAGGAGGGTGCCGAAGAAACAAGAAGAGCAAAACCAGCAGCAGCAGCCGCTCCAAGTCTCCAGTATCAGCCAGTTCCACTGAGAATCAGCAGATGAGGCAAACAGGTTCTAACCCGACCGGTTTGATTAGTCATTTGTCGCAACCACAGACTCAGTCACTTCCTTTCCTGGAGTCGATACAGCATCTTGGTCGTTACGGTGGTGCTGGGAACATGGCATTAAACAGCTTCAATGAGATCCAGCAAGCTCAAGCTCAGAGTACTGATCACATGGGATTTCAGATAGGAGCTGGGAATAATTTGATGAACTTATCTGGTGGGTTGGGAATGGATCAGTGGCGTAATTTGCAGCAAATTCCTTTCTTGGGTAGTACTGGCTTTGACTTATCATCAACAACAGGTTTATACTCATTTCAAAATACTACTGAAGGAGTTGATCAAGACAGTCAGCTAAGGACTGCTAATTCTAGGGTTACTACTCATCAGGTGCCTCCTGTAAAAGTTGAAGATCACAACCATGGGGTGAGTTTGACTAGACCCTTTTTGGGTATTTCAGGGAATAACAATAACAACAACAATAATAACAACAACGACAACAACAATCAGTTCTGGGGCGGAAATGCCTGGACGGATATATCAGGTACTCTCAACTCGTCTTCCACAAGCCATCTGATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

355

Amino Acids

38.43

Weight (kDa)

9.48

Isoelectric Point (pI)

48.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 83 - 138 5e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1066
AccB1I GGYRCC 4 cut(s) 45, 365, 396, 874
AccBSI CCGCTC 1 cut(s) 438
AciI CCGC 7 cut(s) 141, 144, 147, 246, 343, 436, 1002
AclWI GGATC 3 cut(s) 26, 619, 726
AcoI YGGCCR 1 cut(s) 222
AcsI RAATTY 1 cut(s) 741
AcuI CTGAAG 1 cut(s) 834
AfaI GTAC 6 cut(s) 82, 154, 178, 649, 760, 1030
AfiI CCNNNNNNNGG 3 cut(s) 389, 752, 932
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 4 cut(s) 298, 619, 803, 893
AjiI CACGTC 1 cut(s) 339
AjnI CCWGG 2 cut(s) 555, 1010
AjuI GAANNNNNNNTTGG 2 cut(s) 269, 301
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 6 cut(s) 100, 615, 635, 641, 677, 838
AluI AGCT 6 cut(s) 100, 615, 635, 641, 677, 838
Alw26I GTCTC 2 cut(s) 236, 450
AlwI GGATC 3 cut(s) 26, 619, 726
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 4 cut(s) 426, 429, 432, 736
ApoI RAATTY 1 cut(s) 741
AsiGI ACCGGT 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 67
AsuC2I CCSGG 1 cut(s) 217
AsuHPI GGTGA 1 cut(s) 922
AvrII CCTAGG 1 cut(s) 67
BaeGI GKGCMC 1 cut(s) 370
BalI TGGCCA 1 cut(s) 224
BanI GGYRCC 4 cut(s) 45, 365, 396, 874
BanII GRGCYC 2 cut(s) 185, 217
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
BbsI GAAGAC 1 cut(s) 1035
BbvI GCAGC 4 cut(s) 438, 441, 444, 748
BccI CCATC 3 cut(s) 152, 194, 1062
BceAI ACGGC 2 cut(s) 134, 330
BcgI CGANNNNNNTGC 4 cut(s) 118, 152, 560, 594
BciT130I CCWGG 2 cut(s) 557, 1012
BclI TGATCA 2 cut(s) 652, 823
BcnI CCSGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 236, 450
BfaI CTAG 3 cut(s) 68, 855, 921
BfmI CTRYAG 1 cut(s) 304
BglI GCCNNNNNGGC 2 cut(s) 118, 221
BisI GCNGC 8 cut(s) 142, 145, 343, 427, 430, 433, 436, 737
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 8 cut(s) 143, 146, 344, 428, 431, 434, 437, 738
BmcAI AGTACT 2 cut(s) 649, 760
Bme1390I CCNGG 3 cut(s) 217, 557, 1012
BmgBI CACGTC 1 cut(s) 339
BmiI GGNNCC 5 cut(s) 47, 184, 367, 398, 876
BmrFI CCNGG 3 cut(s) 217, 557, 1012
BmsI GCATC 2 cut(s) 219, 580
BpiI GAAGAC 1 cut(s) 1035
BpmI CTGGAG 2 cut(s) 432, 578
Bpu10I CCTNAGC 1 cut(s) 839
BpuEI CTTGAG 2 cut(s) 236, 621
BpuMI CCSGG 1 cut(s) 217
BsaI GGTCTC 1 cut(s) 236
BsaJI CCNNGG 5 cut(s) 67, 116, 201, 260, 904
BsaWI WCCGGW 2 cut(s) 382, 506
Bsc4I CCNNNNNNNGG 3 cut(s) 389, 752, 932
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 5 cut(s) 20, 356, 449, 459, 766
BseBI CCWGG 2 cut(s) 557, 1012
BseDI CCNNGG 5 cut(s) 67, 116, 201, 260, 904
BseGI GGATG 2 cut(s) 61, 91
BseLI CCNNNNNNNGG 3 cut(s) 389, 752, 932
BseMII CTCAG 4 cut(s) 329, 459, 554, 656
BseNI ACTGG 5 cut(s) 20, 356, 449, 459, 766
BseRI GAGGAG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 4 cut(s) 438, 441, 444, 748
BseYI CCCAGC 2 cut(s) 593, 677
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 1 cut(s) 224
BshNI GGYRCC 4 cut(s) 45, 365, 396, 874
BshTI ACCGGT 1 cut(s) 506
BsiEI CGRYCG 1 cut(s) 507
BsiSI CCGG 3 cut(s) 217, 383, 507
BslI CCNNNNNNNGG 3 cut(s) 389, 752, 932
BsmAI GTCTC 2 cut(s) 236, 450
BsnI GGCC 1 cut(s) 224
Bso31I GGTCTC 1 cut(s) 236
Bsp1286I GDGCHC 3 cut(s) 185, 217, 370
Bsp143I GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
Bsp19I CCATGG 2 cut(s) 201, 904
BspACI CCGC 7 cut(s) 141, 144, 147, 246, 343, 436, 1002
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 4 cut(s) 328, 460, 553, 655
BspLI GGNNCC 5 cut(s) 47, 184, 367, 398, 876
BspPI GGATC 3 cut(s) 26, 619, 726
BspQI GCTCTTC 1 cut(s) 407
BspT107I GGYRCC 4 cut(s) 45, 365, 396, 874
BspTNI GGTCTC 1 cut(s) 236
BsrBI CCGCTC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 5 cut(s) 20, 356, 449, 459, 766
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 5 cut(s) 67, 116, 201, 260, 904
BssMI GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
BssT1I CCWWGG 3 cut(s) 67, 201, 904
Bst2UI CCWGG 2 cut(s) 557, 1012
Bst4CI ACNGT 3 cut(s) 264, 587, 833
Bst6I CTCTTC 1 cut(s) 407
BstAPI GCANNNNNTGC 1 cut(s) 339
BstC8I GCNNGC 2 cut(s) 222, 633
BstDEI CTNAG 6 cut(s) 315, 371, 468, 540, 642, 839
BstDSI CCRYGG 4 cut(s) 116, 201, 260, 904
BstF5I GGATG 2 cut(s) 61, 91
BstKTI GATC 8 cut(s) 34, 211, 627, 655, 721, 826, 898, 1062
BstMAI GTCTC 2 cut(s) 236, 450
BstMBI GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
BstMCI CGRYCG 1 cut(s) 507
BstNI CCWGG 2 cut(s) 557, 1012
BstSCI CCNGG 3 cut(s) 215, 555, 1010
BstSFI CTRYAG 1 cut(s) 304
BstSLI GKGCMC 1 cut(s) 370
BstV1I GCAGC 4 cut(s) 438, 441, 444, 748
BstV2I GAAGAC 1 cut(s) 1035
BstX2I RGATCY 2 cut(s) 31, 624
BstXI CCANNNNNNTGG 1 cut(s) 202
BstYI RGATCY 2 cut(s) 31, 624
BsuRI GGCC 1 cut(s) 224
BtgI CCRYGG 4 cut(s) 116, 201, 260, 904
BtrI CACGTC 1 cut(s) 339
BtsCI GGATG 2 cut(s) 61, 91
BtsI GCAGTG 1 cut(s) 107
BtsIMutI CAGTG 3 cut(s) 107, 465, 728
Cac8I GCNNGC 2 cut(s) 222, 633
Cfr10I RCCGGY 1 cut(s) 506
Csp6I GTAC 6 cut(s) 81, 153, 177, 648, 759, 1029
CspAI ACCGGT 1 cut(s) 506
CviAII CATG 5 cut(s) 134, 202, 601, 658, 905
CviQI GTAC 6 cut(s) 81, 153, 177, 648, 759, 1029
DdeI CTNAG 6 cut(s) 315, 371, 468, 540, 642, 839
DpnI GATC 8 cut(s) 33, 210, 626, 654, 720, 825, 897, 1061
DpnII GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
EaeI YGGCCR 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 407
EarI CTCTTC 1 cut(s) 407
EciI GGCGGA 1 cut(s) 1017
Eco130I CCWWGG 3 cut(s) 67, 201, 904
Eco24I GRGCYC 2 cut(s) 185, 217
Eco31I GGTCTC 1 cut(s) 236
Eco57I CTGAAG 1 cut(s) 834
EcoRII CCWGG 2 cut(s) 555, 1010
EcoT14I CCWWGG 3 cut(s) 67, 201, 904
EcoT38I GRGCYC 2 cut(s) 185, 217
ErhI CCWWGG 3 cut(s) 67, 201, 904
FaeI CATG 5 cut(s) 137, 205, 604, 661, 908
FaiI YATR 8 cut(s) 135, 203, 602, 659, 793, 906, 1022, 1066
FatI CATG 5 cut(s) 133, 201, 600, 657, 904
FbaI TGATCA 2 cut(s) 652, 823
Fnu4HI GCNGC 8 cut(s) 142, 145, 343, 427, 430, 433, 436, 737
FokI GGATG 2 cut(s) 48, 78
FriOI GRGCYC 2 cut(s) 185, 217
Fsp4HI GCNGC 8 cut(s) 142, 145, 343, 427, 430, 433, 436, 737
FspBI CTAG 3 cut(s) 68, 855, 921
GluI GCNGC 8 cut(s) 142, 145, 343, 427, 430, 433, 436, 737
GsaI CCCAGC 2 cut(s) 597, 681
GsuI CTGGAG 2 cut(s) 432, 578
HaeIII GGCC 1 cut(s) 224
HapII CCGG 3 cut(s) 217, 383, 507
Hin1II CATG 5 cut(s) 137, 205, 604, 661, 908
HinfI GANTC 4 cut(s) 269, 472, 538, 560
HpaII CCGG 3 cut(s) 217, 383, 507
HphI GGTGA 1 cut(s) 922
Hpy166II GTNNAC 2 cut(s) 260, 273
Hpy188I TCNGA 4 cut(s) 191, 645, 669, 1059
Hpy188III TCNNGA 1 cut(s) 827
Hpy8I GTNNAC 2 cut(s) 260, 273
HpyAV CCTTC 1 cut(s) 809
HpyCH4III ACNGT 3 cut(s) 264, 587, 833
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 333, 736
HpyF3I CTNAG 6 cut(s) 315, 371, 468, 540, 642, 839
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 5 cut(s) 137, 205, 604, 661, 908
Ksp22I TGATCA 2 cut(s) 652, 823
Kzo9I GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
LguI GCTCTTC 1 cut(s) 407
LmnI GCTCC 3 cut(s) 188, 443, 674
Lsp1109I GCAGC 4 cut(s) 438, 441, 444, 748
LweI GCATC 2 cut(s) 219, 580
MaeI CTAG 3 cut(s) 68, 855, 921
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 4 cut(s) 347, 543, 581, 859
MalI GATC 8 cut(s) 33, 210, 626, 654, 720, 825, 897, 1061
MbiI CCGCTC 1 cut(s) 438
MboI GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
MboII GAAGA 4 cut(s) 414, 424, 905, 1035
MfeI CAATTG 1 cut(s) 40
MflI RGATCY 2 cut(s) 31, 624
MhlI GDGCHC 3 cut(s) 185, 217, 370
MlsI TGGCCA 1 cut(s) 224
MluCI AATT 5 cut(s) 40, 685, 730, 741, 850
MluNI TGGCCA 1 cut(s) 224
MlyI GAGTC 3 cut(s) 278, 532, 569
Mox20I TGGCCA 1 cut(s) 224
MscI TGGCCA 1 cut(s) 224
MseI TTAA 1 cut(s) 608
MslI CAYNNNNRTG 2 cut(s) 253, 903
Msp20I TGGCCA 1 cut(s) 224
MspI CCGG 3 cut(s) 217, 383, 507
MspR9I CCNGG 3 cut(s) 217, 557, 1012
MunI CAATTG 1 cut(s) 40
MvaI CCWGG 2 cut(s) 557, 1012
NciI CCSGG 1 cut(s) 217
NcoI CCATGG 2 cut(s) 201, 904
NdeII GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
NlaIII CATG 5 cut(s) 137, 205, 604, 661, 908
NlaIV GGNNCC 5 cut(s) 47, 184, 367, 398, 876
NmuCI GTSAC 1 cut(s) 543
OliI CACNNNNGTG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 472
PflFI GACNNNGTC 1 cut(s) 541
PfoI TCCNGGA 1 cut(s) 555
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 8 cut(s) 143, 146, 344, 428, 431, 434, 437, 738
PleI GAGTC 3 cut(s) 277, 532, 568
PpsI GAGTC 3 cut(s) 277, 532, 568
PsiI TTATAA 1 cut(s) 1066
Psp6I CCWGG 2 cut(s) 555, 1010
PspFI CCCAGC 2 cut(s) 593, 677
PspGI CCWGG 2 cut(s) 555, 1010
PspN4I GGNNCC 5 cut(s) 47, 184, 367, 398, 876
PsuI RGATCY 2 cut(s) 31, 624
PsyI GACNNNGTC 1 cut(s) 541
RsaI GTAC 6 cut(s) 82, 154, 178, 649, 760, 1030
RsaNI GTAC 6 cut(s) 81, 153, 177, 648, 759, 1029
RseI CAYNNNNRTG 2 cut(s) 253, 903
SapI GCTCTTC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 608
SatI GCNGC 8 cut(s) 142, 145, 343, 427, 430, 433, 436, 737
Sau3AI GATC 8 cut(s) 31, 208, 624, 652, 718, 823, 895, 1059
ScaI AGTACT 2 cut(s) 649, 760
SchI GAGTC 3 cut(s) 278, 532, 569
ScrFI CCNGG 3 cut(s) 217, 557, 1012
SduI GDGCHC 3 cut(s) 185, 217, 370
SfaNI GCATC 2 cut(s) 219, 580
SfcI CTRYAG 1 cut(s) 304
SmiMI CAYNNNNRTG 2 cut(s) 253, 903
SmlI CTYRAG 2 cut(s) 251, 636
SmoI CTYRAG 2 cut(s) 251, 636
Sse9I AATT 5 cut(s) 40, 685, 730, 741, 850
SsiI CCGC 7 cut(s) 141, 144, 147, 246, 343, 436, 1002
SspMI CTAG 3 cut(s) 68, 855, 921
StyD4I CCNGG 3 cut(s) 215, 555, 1010
StyI CCWWGG 3 cut(s) 67, 201, 904
TaaI ACNGT 3 cut(s) 264, 587, 833
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 211, 563
TasI AATT 5 cut(s) 40, 685, 730, 741, 850
TatI WGTACW 2 cut(s) 647, 758
TauI GCSGC 4 cut(s) 144, 147, 345, 438
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 1 cut(s) 608
Tru9I TTAA 1 cut(s) 608
TscAI CASTG 3 cut(s) 114, 472, 728
TseFI GTSAC 1 cut(s) 543
TseI GCWGC 4 cut(s) 426, 429, 432, 736
Tsp45I GTSAC 1 cut(s) 543
TspDTI ATGAA 1 cut(s) 707
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 3 cut(s) 114, 472, 728
Tth111I GACNNNGTC 1 cut(s) 541
XapI RAATTY 1 cut(s) 741
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 3 cut(s) 68, 855, 921
ZrmI AGTACT 2 cut(s) 649, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.