Rroxscaffold_1G00016830

Dof zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011693
Physical Location & Seq
Forward (+)
20920369 .. 20921409
1041 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016830.1

Sequence Viewer

Length: 1041 bp
ATGGATCTAATTTTATCTTTTGCAGCAACCAAATCATCCCCTAGGAAGTGGAAGTACCGAAAATCATCCACAGCTTCCACCACTGCCTCCACGGCAGTTCGGCACTCATGTGTCGGCGGCGGTGGTGGTACTGATGGTAGTGGTGGAAGTGGTACGGGCTCCATCAGACCCAACTCCATGGCTGATCGAGCCCGGCTTGCCAAGATGCCACAACCAGAGACCGCACTCAAGTGTCCACGGTGCGAGTCCACCAACACCAAGTTCTGCTACTTCAACAACTACAGCCTCTCTCAGCCTCGCCACTTCTGCAAGACATGCCGCCGTTACTGGACAAGAGGGGGTGCCCTTCGAAATGTTCCGGTAGGAGGAGGGTGCCGAAGAAACAAGAAGAGCAAAACCAGCAGCAGCAGCCGCTCCAAGTCTCCAGTATCAGCCAGTTCCACTGAGAATCAGCAGATGAGGCAAACAGGTTCTAACACGACCGGTTTGATTAGTCATTTGTCGCAATCACAGACTCAGTCACTTCCTTTCCTGGAGTCGATACAGAATTTTAGTCGTTACGGTAGTGCTGGGAACATGGCATTAAACAGCTTCAATGAGATCCAGCAAGCTCAAGCTCAGAGTACTGATCACATGGGATTTCAGATAGGAGCTGGGAATAATTTGATGAACATATCTGGTGGGTTGGGAATGGATCAGTGGCGTAATTTGCAGCAAATTCCTTTCTTGGGTAGTACTGGCTTTGACTTATCATCAACAACAGGTTTATACCCATTTCAAAATACTACTGAAGGAGTTGATCAAGACATTCAGCTAAGGACTACTAATTCTAGGGTTACTACTCATCAGGTGCCTCCTGTAAAAGTTGAAGATCACAACCATGGGGTGAGTTTGACTAGACCCTTTCTGGGTATTTCAGGGAATAACAATAACAACAACAATAATAACAACAACGACAACAACAATCAGTTCTGGGGCGCAAATGCGTGGACGGATATATCAGGTGCTCTCAACTCGTCTTCTACAAGCCATTTCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

346

Amino Acids

37.49

Weight (kDa)

9.92

Isoelectric Point (pI)

46.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 75 - 130 4.8e-33 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011693)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37590
fragaria_vesca FvH4_3g35790 FvH4_3g35790 FvH4_3g35790
malus_domestica MD03G1096400.v1.1 MD11G1111100.v1.1
prunus_persica Prupe.6G079500_v2.0.a1
pyrus_communis pycom03g07900 pycom11g09190
rosa_chinensis RchiOBHm_Chr5g0063971
rosa_laevigata RLG00000035695
rosa_roxburghii Rroxscaffold_1G00016830
rosa_rugosa Rorug05G0361400 Rorug05G0361400
rosa_samantha Rh5AG420100 Rh5BG435700 Rh5CG458800 Rh5DG448900
rosa_wichuraiana Rw5G039460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1039
AccB1I GGYRCC 3 cut(s) 341, 372, 850
AccBSI CCGCTC 1 cut(s) 414
AciI CCGC 5 cut(s) 117, 120, 222, 319, 412
AclWI GGATC 3 cut(s) 12, 595, 702
AcsI RAATTY 2 cut(s) 547, 717
AcuI CTGAAG 1 cut(s) 810
AfaI GTAC 5 cut(s) 56, 130, 154, 625, 736
AfiI CCNNNNNNNGG 3 cut(s) 365, 728, 908
AgeI ACCGGT 1 cut(s) 482
AgsI TTSAA 4 cut(s) 274, 595, 779, 869
AjnI CCWGG 1 cut(s) 531
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AleI CACNNNNGTG 2 cut(s) 108, 229
AluBI AGCT 6 cut(s) 74, 591, 611, 617, 653, 814
AluI AGCT 6 cut(s) 74, 591, 611, 617, 653, 814
Alw21I GWGCWC 1 cut(s) 1009
Alw26I GTCTC 2 cut(s) 212, 426
AlwI GGATC 3 cut(s) 12, 595, 702
ApeKI GCWGC 5 cut(s) 23, 402, 405, 408, 712
ApoI RAATTY 2 cut(s) 547, 717
AsiGI ACCGGT 1 cut(s) 482
AspA2I CCTAGG 1 cut(s) 41
AspLEI GCGC 1 cut(s) 980
AsuC2I CCSGG 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 898
AsuII TTCGAA 1 cut(s) 349
AvrII CCTAGG 1 cut(s) 41
BaeGI GKGCMC 1 cut(s) 346
BanI GGYRCC 3 cut(s) 341, 372, 850
BanII GRGCYC 2 cut(s) 161, 193
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BbsI GAAGAC 1 cut(s) 1011
Bbv12I GWGCWC 1 cut(s) 1009
BbvI GCAGC 5 cut(s) 35, 414, 417, 420, 724
BccI CCATC 2 cut(s) 128, 170
BceAI ACGGC 2 cut(s) 108, 306
BciT130I CCWGG 1 cut(s) 533
BclI TGATCA 2 cut(s) 628, 799
BcnI CCSGG 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 212, 426
BfaI CTAG 3 cut(s) 42, 831, 897
BfmI CTRYAG 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 92
BisI GCNGC 8 cut(s) 24, 118, 319, 403, 406, 409, 412, 713
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 8 cut(s) 25, 119, 320, 404, 407, 410, 413, 714
BmcAI AGTACT 2 cut(s) 625, 736
Bme1390I CCNGG 2 cut(s) 193, 533
BmiI GGNNCC 4 cut(s) 160, 343, 374, 852
BmrFI CCNGG 2 cut(s) 193, 533
BmsI GCATC 1 cut(s) 195
BpiI GAAGAC 1 cut(s) 1011
BpmI CTGGAG 2 cut(s) 408, 554
Bpu10I CCTNAGC 1 cut(s) 815
Bpu14I TTCGAA 1 cut(s) 349
BpuEI CTTGAG 2 cut(s) 212, 597
BpuMI CCSGG 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 212
BsaJI CCNNGG 5 cut(s) 41, 90, 177, 236, 880
BsaWI WCCGGW 2 cut(s) 358, 482
Bsc4I CCNNNNNNNGG 3 cut(s) 365, 728, 908
Bse118I RCCGGY 1 cut(s) 482
Bse1I ACTGG 4 cut(s) 332, 425, 435, 742
BseBI CCWGG 1 cut(s) 533
BseDI CCNNGG 5 cut(s) 41, 90, 177, 236, 880
BseGI GGATG 2 cut(s) 35, 65
BseLI CCNNNNNNNGG 3 cut(s) 365, 728, 908
BseMII CTCAG 4 cut(s) 305, 435, 530, 632
BseNI ACTGG 4 cut(s) 332, 425, 435, 742
BseRI GAGGAG 1 cut(s) 381
BseSI GKGCMC 1 cut(s) 346
BseXI GCAGC 5 cut(s) 35, 414, 417, 420, 724
BseYI CCCAGC 2 cut(s) 569, 653
Bsh1285I CGRYCG 1 cut(s) 483
BshNI GGYRCC 3 cut(s) 341, 372, 850
BshTI ACCGGT 1 cut(s) 482
BsiEI CGRYCG 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 1009
BsiSI CCGG 3 cut(s) 193, 359, 483
BslI CCNNNNNNNGG 3 cut(s) 365, 728, 908
BsmAI GTCTC 2 cut(s) 212, 426
Bso31I GGTCTC 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 349
Bsp1286I GDGCHC 4 cut(s) 161, 193, 346, 1009
Bsp143I GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
Bsp19I CCATGG 2 cut(s) 177, 880
BspACI CCGC 5 cut(s) 117, 120, 222, 319, 412
BspCNI CTCAG 4 cut(s) 304, 436, 529, 631
BspLI GGNNCC 4 cut(s) 160, 343, 374, 852
BspPI GGATC 3 cut(s) 12, 595, 702
BspQI GCTCTTC 1 cut(s) 383
BspT104I TTCGAA 1 cut(s) 349
BspT107I GGYRCC 3 cut(s) 341, 372, 850
BspTNI GGTCTC 1 cut(s) 212
BsrBI CCGCTC 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 482
BsrI ACTGG 4 cut(s) 332, 425, 435, 742
BssAI RCCGGY 1 cut(s) 482
BssECI CCNNGG 5 cut(s) 41, 90, 177, 236, 880
BssMI GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
BssT1I CCWWGG 3 cut(s) 41, 177, 880
Bst2UI CCWGG 1 cut(s) 533
Bst4CI ACNGT 2 cut(s) 240, 563
Bst6I CTCTTC 1 cut(s) 383
BstAPI GCANNNNNTGC 1 cut(s) 315
BstBI TTCGAA 1 cut(s) 349
BstC8I GCNNGC 2 cut(s) 198, 609
BstDEI CTNAG 5 cut(s) 291, 444, 516, 618, 815
BstDSI CCRYGG 4 cut(s) 90, 177, 236, 880
BstF5I GGATG 2 cut(s) 35, 65
BstHHI GCGC 1 cut(s) 980
BstKTI GATC 7 cut(s) 7, 187, 603, 631, 697, 802, 874
BstMAI GTCTC 2 cut(s) 212, 426
BstMBI GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
BstMCI CGRYCG 1 cut(s) 483
BstNI CCWGG 1 cut(s) 533
BstNSI RCATGY 1 cut(s) 318
BstSCI CCNGG 2 cut(s) 191, 531
BstSFI CTRYAG 1 cut(s) 280
BstSLI GKGCMC 1 cut(s) 346
BstV1I GCAGC 5 cut(s) 35, 414, 417, 420, 724
BstV2I GAAGAC 1 cut(s) 1011
BstX2I RGATCY 2 cut(s) 4, 600
BstXI CCANNNNNNTGG 1 cut(s) 178
BstYI RGATCY 2 cut(s) 4, 600
BtgI CCRYGG 4 cut(s) 90, 177, 236, 880
BtsCI GGATG 2 cut(s) 35, 65
BtsI GCAGTG 1 cut(s) 81
BtsIMutI CAGTG 3 cut(s) 81, 441, 704
Cac8I GCNNGC 2 cut(s) 198, 609
CfoI GCGC 1 cut(s) 980
Cfr10I RCCGGY 1 cut(s) 482
Csp6I GTAC 5 cut(s) 55, 129, 153, 624, 735
CspAI ACCGGT 1 cut(s) 482
CviAII CATG 6 cut(s) 108, 178, 315, 577, 634, 881
CviQI GTAC 5 cut(s) 55, 129, 153, 624, 735
DdeI CTNAG 5 cut(s) 291, 444, 516, 618, 815
DpnI GATC 7 cut(s) 6, 186, 602, 630, 696, 801, 873
DpnII GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco130I CCWWGG 3 cut(s) 41, 177, 880
Eco24I GRGCYC 2 cut(s) 161, 193
Eco31I GGTCTC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 810
EcoRII CCWGG 1 cut(s) 531
EcoT14I CCWWGG 3 cut(s) 41, 177, 880
EcoT38I GRGCYC 2 cut(s) 161, 193
ErhI CCWWGG 3 cut(s) 41, 177, 880
FaeI CATG 6 cut(s) 111, 181, 318, 580, 637, 884
FatI CATG 6 cut(s) 107, 177, 314, 576, 633, 880
FbaI TGATCA 2 cut(s) 628, 799
Fnu4HI GCNGC 8 cut(s) 24, 118, 319, 403, 406, 409, 412, 713
FokI GGATG 2 cut(s) 22, 52
FriOI GRGCYC 2 cut(s) 161, 193
Fsp4HI GCNGC 8 cut(s) 24, 118, 319, 403, 406, 409, 412, 713
FspBI CTAG 3 cut(s) 42, 831, 897
GlaI GCGC 1 cut(s) 979
GluI GCNGC 8 cut(s) 24, 118, 319, 403, 406, 409, 412, 713
GsaI CCCAGC 2 cut(s) 573, 657
GsuI CTGGAG 2 cut(s) 408, 554
HapII CCGG 3 cut(s) 193, 359, 483
HhaI GCGC 1 cut(s) 980
Hin1II CATG 6 cut(s) 111, 181, 318, 580, 637, 884
Hin6I GCGC 1 cut(s) 978
HinP1I GCGC 1 cut(s) 978
HinfI GANTC 4 cut(s) 245, 448, 514, 536
HpaII CCGG 3 cut(s) 193, 359, 483
HphI GGTGA 1 cut(s) 898
Hpy166II GTNNAC 3 cut(s) 236, 249, 990
Hpy188I TCNGA 3 cut(s) 167, 621, 645
Hpy188III TCNNGA 1 cut(s) 803
Hpy8I GTNNAC 3 cut(s) 236, 249, 990
HpyAV CCTTC 2 cut(s) 356, 785
HpyCH4III ACNGT 2 cut(s) 240, 563
HpyCH4V TGCA 3 cut(s) 23, 309, 712
HpyF3I CTNAG 5 cut(s) 291, 444, 516, 618, 815
Hsp92II CATG 6 cut(s) 111, 181, 318, 580, 637, 884
HspAI GCGC 1 cut(s) 978
Ksp22I TGATCA 2 cut(s) 628, 799
Kzo9I GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 3 cut(s) 164, 419, 650
Lsp1109I GCAGC 5 cut(s) 35, 414, 417, 420, 724
LweI GCATC 1 cut(s) 195
MaeI CTAG 3 cut(s) 42, 831, 897
MaeIII GTNAC 4 cut(s) 323, 519, 557, 835
MalI GATC 7 cut(s) 6, 186, 602, 630, 696, 801, 873
MbiI CCGCTC 1 cut(s) 414
MboI GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
MboII GAAGA 4 cut(s) 390, 400, 881, 1011
MflI RGATCY 2 cut(s) 4, 600
MhlI GDGCHC 4 cut(s) 161, 193, 346, 1009
MluCI AATT 6 cut(s) 9, 547, 661, 706, 717, 826
MlyI GAGTC 3 cut(s) 254, 508, 545
MnlI CCTC 8 cut(s) 97, 296, 306, 329, 359, 362, 453, 864
MseI TTAA 1 cut(s) 584
MslI CAYNNNNRTG 3 cut(s) 108, 229, 879
MspI CCGG 3 cut(s) 193, 359, 483
MspR9I CCNGG 2 cut(s) 193, 533
MvaI CCWGG 1 cut(s) 533
NciI CCSGG 1 cut(s) 193
NcoI CCATGG 2 cut(s) 177, 880
NdeII GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
NlaIII CATG 6 cut(s) 111, 181, 318, 580, 637, 884
NlaIV GGNNCC 4 cut(s) 160, 343, 374, 852
NmuCI GTSAC 1 cut(s) 519
NspI RCATGY 1 cut(s) 318
NspV TTCGAA 1 cut(s) 349
OliI CACNNNNGTG 2 cut(s) 108, 229
PciSI GCTCTTC 1 cut(s) 383
PfeI GAWTC 1 cut(s) 448
PflFI GACNNNGTC 1 cut(s) 517
PfoI TCCNGGA 1 cut(s) 531
PinAI ACCGGT 1 cut(s) 482
PkrI GCNGC 8 cut(s) 25, 119, 320, 404, 407, 410, 413, 714
PleI GAGTC 3 cut(s) 253, 508, 544
PpsI GAGTC 3 cut(s) 253, 508, 544
PsiI TTATAA 1 cut(s) 1039
Psp6I CCWGG 1 cut(s) 531
PspFI CCCAGC 2 cut(s) 569, 653
PspGI CCWGG 1 cut(s) 531
PspN4I GGNNCC 4 cut(s) 160, 343, 374, 852
PsuI RGATCY 2 cut(s) 4, 600
PsyI GACNNNGTC 1 cut(s) 517
RsaI GTAC 5 cut(s) 56, 130, 154, 625, 736
RsaNI GTAC 5 cut(s) 55, 129, 153, 624, 735
RseI CAYNNNNRTG 3 cut(s) 108, 229, 879
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 1 cut(s) 584
SatI GCNGC 8 cut(s) 24, 118, 319, 403, 406, 409, 412, 713
Sau3AI GATC 7 cut(s) 4, 184, 600, 628, 694, 799, 871
ScaI AGTACT 2 cut(s) 625, 736
SchI GAGTC 3 cut(s) 254, 508, 545
ScrFI CCNGG 2 cut(s) 193, 533
SduI GDGCHC 4 cut(s) 161, 193, 346, 1009
SfaNI GCATC 1 cut(s) 195
SfcI CTRYAG 1 cut(s) 280
SfuI TTCGAA 1 cut(s) 349
SmiMI CAYNNNNRTG 3 cut(s) 108, 229, 879
SmlI CTYRAG 2 cut(s) 227, 612
SmoI CTYRAG 2 cut(s) 227, 612
Sse9I AATT 6 cut(s) 9, 547, 661, 706, 717, 826
SsiI CCGC 5 cut(s) 117, 120, 222, 319, 412
SspMI CTAG 3 cut(s) 42, 831, 897
StyD4I CCNGG 2 cut(s) 191, 531
StyI CCWWGG 3 cut(s) 41, 177, 880
TaaI ACNGT 2 cut(s) 240, 563
TaqI TCGA 3 cut(s) 187, 349, 539
TasI AATT 6 cut(s) 9, 547, 661, 706, 717, 826
TatI WGTACW 2 cut(s) 623, 734
TauI GCSGC 3 cut(s) 120, 321, 414
TfiI GAWTC 1 cut(s) 448
Tru1I TTAA 1 cut(s) 584
Tru9I TTAA 1 cut(s) 584
TscAI CASTG 3 cut(s) 88, 448, 704
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 5 cut(s) 23, 402, 405, 408, 712
Tsp45I GTSAC 1 cut(s) 519
TspDTI ATGAA 1 cut(s) 683
TspGWI ACGGA 1 cut(s) 1007
TspRI CASTG 3 cut(s) 88, 448, 704
Tth111I GACNNNGTC 1 cut(s) 517
XapI RAATTY 2 cut(s) 547, 717
XceI RCATGY 1 cut(s) 318
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 3 cut(s) 42, 831, 897
ZrmI AGTACT 2 cut(s) 625, 736
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.