Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015821

Physical Location & Seq

Genomic Coordinates Reverse (-)

15787523 .. 15790139

Gene Structure 2617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37640.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGACGGCGACTGCGTTTAGGGTCGGCTTGTGGTTGGCCGTTACGGCTTCCTTTCTCTTAACCGCAACAAACGCCAAAATCCCCGGCGTTTACAGTGGCGGACCGTGGCAGAATGCACACGCCACTTTCTACGGTGGCAGTGACGCCTCCGGCACAATGGGCGGCGCGTGTGGGTACGGGAACTTGTACAGCCAAGGATACGGTGTGAACACGGCGGCGTTGAGCACTGCTTTGTTCAACAACGGATTCAGCTGTGGTGCTTGTTTTGAGATTAAGTGTACTGATGATCCGAGATGGTGTGTTCCGGGAAATCCATCTATTCTTGTGACGGCGACGAACTTTTGTCCGCCGAATTTTGCTCAGCCGAGTGACGACGGAGGGTGGTGCAATCCGCCGCGCGAGCATTTTGATCTCGCCATGCCTATGTTCCTCAAGATCGGTCTATACCGTGCAGGCATTGTCCCCGTCTCCTATCGCAGGGTACCTTGTCGGAAGATAGGAGGGATAAGATTCACAGTAAACGGATTCAGATACTTCAATCTTGTTCTGGTAACTAACGTTGCCGGCGCCGGAGATATTAACGGAGTTAGCGTAAAGGGATCAAAGACAGATTGGGTGAGGATGAGTCGGAACTGGGGACAGAACTGGCAATCCAACGCCGTTCTCATCGGCCAATCACTCTCTTTCCGAGTCACCGCCTCTGACCGACGTTCTTCTACCTCATGGAACGTTGCTCCTGCCACGTGGCAGTTTGGTCAGACTTTCTCCGGCAAAAACTTTCGAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009653 GO:0009719 GO:0009725 GO:0009739 GO:0009987 GO:0010033 GO:0010114 GO:0016020 GO:0030312 GO:0032502 GO:0033993 GO:0042221 GO:0044464 GO:0048646 GO:0048856 GO:0050896 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

262

Amino Acids

28.27

Weight (kDa)

9.53

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	30 - 140	1.7e-07	EXPB1-like domain 1
DPBB_1	PF03330	46 - 133	2.9e-21	Lytic transglycolase
Expansin_C	PF01357	144 - 221	1.9e-29	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37640 AT2G37640 AT5G02260
fragaria_vesca	FvH4_6g13610
malus_domestica	MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica	Prupe.6G256500_v2.0.a1
pyrus_communis	pycom04g11810 pycom12g13760
rosa_chinensis	RchiOBHm_Chr3g0466461
rosa_laevigata	RLG00000024572
rosa_multiflora	Rmu_sc0003332.1_g000023
rosa_rugosa	Rorug03G0082100
rosa_samantha	Rh3DG150700
rosa_wichuraiana	Rw3G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	481
AccB1I	GGYRCC	2 cut(s)	481, 566
AccII	CGCG	3 cut(s)	167, 397, 399
AciI	CCGC	8 cut(s)	63, 99, 162, 215, 347, 392, 395, 696
AclI	AACGTT	2 cut(s)	558, 729
AclWI	GGATC	2 cut(s)	281, 607
AcoI	YGGCCR	2 cut(s)	36, 670
AcsI	RAATTY	1 cut(s)	352
AcvI	CACGTG	1 cut(s)	744
AcyI	GRCGYC	2 cut(s)	144, 567
AfaI	GTAC	4 cut(s)	176, 188, 280, 483
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	238, 538
AloI	GAACNNNNNNTCC	2 cut(s)	635, 667
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	2 cut(s)	281, 607
AoxI	GGCC	2 cut(s)	36, 670
ApoI	RAATTY	1 cut(s)	352
Asp718I	GGTACC	1 cut(s)	481
AspLEI	GCGC	3 cut(s)	167, 399, 569
AspS9I	GGNCC	1 cut(s)	101
AsuC2I	CCSGG	2 cut(s)	84, 306
AsuHPI	GGTGA	2 cut(s)	628, 685
AvaII	GGWCC	1 cut(s)	101
BanI	GGYRCC	2 cut(s)	481, 566
BbrPI	CACGTG	1 cut(s)	744
Bbv12I	GWGCWC	1 cut(s)	227
BccI	CCATC	2 cut(s)	288, 322
BceAI	ACGGC	6 cut(s)	21, 23, 60, 228, 345, 644
BciVI	GTATCC	1 cut(s)	191
BcnI	CCSGG	2 cut(s)	84, 306
BcoDI	GTCTC	1 cut(s)	472
BfoI	RGCGCY	1 cut(s)	570
BfuI	GTATCC	1 cut(s)	191
BglI	GCCNNNNNGGC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	163, 216, 395
BlpI	GCTNAGC	1 cut(s)	360
BlsI	GCNGC	3 cut(s)	164, 217, 396
Bme1390I	CCNGG	2 cut(s)	84, 306
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	101
BmiI	GGNNCC	2 cut(s)	483, 568
BmrFI	CCNGG	2 cut(s)	84, 306
BmrI	ACTGGG	1 cut(s)	643
BmuI	ACTGGG	1 cut(s)	643
Bpu1102I	GCTNAGC	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	416
BpuMI	CCSGG	2 cut(s)	84, 306
BsaAI	YACGTR	1 cut(s)	744
BsaHI	GRCGYC	2 cut(s)	144, 567
BsaJI	CCNNGG	3 cut(s)	82, 104, 193
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	2 cut(s)	638, 650
BseDI	CCNNGG	3 cut(s)	82, 104, 193
BseGI	GGATG	1 cut(s)	627
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMII	CTCAG	1 cut(s)	374
BseNI	ACTGG	2 cut(s)	638, 650
BsgI	GTGCAG	1 cut(s)	471
Bsh1236I	CGCG	3 cut(s)	167, 397, 399
BshFI	GGCC	2 cut(s)	38, 672
BshNI	GGYRCC	2 cut(s)	481, 566
BsiHKAI	GWGCWC	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	84, 150, 305, 564, 570, 768
BslFI	GGGAC	2 cut(s)	446, 651
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	1 cut(s)	472
BsmBI	CGTCTC	1 cut(s)	472
BsmFI	GGGAC	2 cut(s)	446, 651
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	38, 672
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	4 cut(s)	286, 409, 435, 599
Bsp1720I	GCTNAGC	1 cut(s)	360
BspACI	CCGC	8 cut(s)	63, 99, 162, 215, 347, 392, 395, 696
BspANI	GGCC	2 cut(s)	38, 672
BspCNI	CTCAG	1 cut(s)	373
BspFNI	CGCG	3 cut(s)	167, 397, 399
BspLI	GGNNCC	2 cut(s)	483, 568
BspPI	GGATC	2 cut(s)	281, 607
BspT107I	GGYRCC	2 cut(s)	481, 566
BsrFI	RCCGGY	1 cut(s)	563
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	2 cut(s)	638, 650
BssAI	RCCGGY	1 cut(s)	563
BssECI	CCNNGG	3 cut(s)	82, 104, 193
BssMI	GATC	4 cut(s)	286, 409, 435, 599
BssNI	GRCGYC	2 cut(s)	144, 567
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	6 cut(s)	95, 105, 134, 203, 449, 517
BstACI	GRCGYC	2 cut(s)	144, 567
BstAUI	TGTACA	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	744
BstC8I	GCNNGC	3 cut(s)	401, 454, 565
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	104
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	1 cut(s)	627
BstFNI	CGCG	3 cut(s)	167, 397, 399
BstH2I	RGCGCY	1 cut(s)	570
BstHHI	GCGC	3 cut(s)	167, 399, 569
BstKTI	GATC	4 cut(s)	289, 412, 438, 602
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	4 cut(s)	286, 409, 435, 599
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 71, 159, 400
BstSCI	CCNGG	2 cut(s)	82, 304
BstUI	CGCG	3 cut(s)	167, 397, 399
BsuI	GTATCC	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	38, 672
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	1 cut(s)	627
BtsI	GCAGTG	2 cut(s)	145, 225
BtsIMutI	CAGTG	3 cut(s)	100, 145, 225
Cac8I	GCNNGC	3 cut(s)	401, 454, 565
CfoI	GCGC	3 cut(s)	167, 399, 569
Cfr10I	RCCGGY	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	101
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	4 cut(s)	175, 187, 279, 482
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	2 cut(s)	418, 723
CviJI	RGCY	7 cut(s)	27, 38, 47, 192, 252, 364, 672
CviKI_1	RGCY	7 cut(s)	27, 38, 47, 192, 252, 364, 672
CviQI	GTAC	4 cut(s)	175, 187, 279, 482
DdeI	CTNAG	1 cut(s)	360
DinI	GGCGCC	1 cut(s)	568
DpnI	GATC	4 cut(s)	288, 411, 437, 601
DpnII	GATC	4 cut(s)	286, 409, 435, 599
EaeI	YGGCCR	2 cut(s)	36, 670
EciI	GGCGGA	3 cut(s)	114, 336, 381
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	101
Eco72I	CACGTG	1 cut(s)	744
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoT14I	CCWWGG	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	568
EheI	GGCGCC	1 cut(s)	568
ErhI	CCWWGG	1 cut(s)	193
Esp3I	CGTCTC	1 cut(s)	472
FaeI	CATG	2 cut(s)	421, 726
FaiI	YATR	4 cut(s)	419, 425, 445, 724
FaqI	GGGAC	2 cut(s)	446, 651
FatI	CATG	2 cut(s)	417, 722
Fnu4HI	GCNGC	3 cut(s)	163, 216, 395
FokI	GGATG	1 cut(s)	634
Fsp4HI	GCNGC	3 cut(s)	163, 216, 395
GlaI	GCGC	3 cut(s)	166, 398, 568
GluI	GCNGC	3 cut(s)	163, 216, 395
HaeII	RGCGCY	1 cut(s)	570
HaeIII	GGCC	2 cut(s)	38, 672
HapII	CCGG	6 cut(s)	84, 150, 305, 564, 570, 768
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	3 cut(s)	167, 399, 569
Hin1I	GRCGYC	2 cut(s)	144, 567
Hin1II	CATG	2 cut(s)	421, 726
Hin6I	GCGC	3 cut(s)	165, 397, 567
HinP1I	GCGC	3 cut(s)	165, 397, 567
HinfI	GANTC	6 cut(s)	246, 510, 525, 625, 690, 783
HpaII	CCGG	6 cut(s)	84, 150, 305, 564, 570, 768
HphI	GGTGA	2 cut(s)	628, 685
Hpy166II	GTNNAC	4 cut(s)	91, 208, 279, 520
Hpy188I	TCNGA	8 cut(s)	291, 492, 530, 630, 689, 703, 759, 788
Hpy188III	TCNNGA	1 cut(s)	433
Hpy8I	GTNNAC	4 cut(s)	91, 208, 279, 520
Hpy99I	CGWCG	3 cut(s)	337, 377, 711
HpyCH4III	ACNGT	6 cut(s)	95, 105, 134, 203, 449, 517
HpyCH4IV	ACGT	4 cut(s)	558, 709, 729, 743
HpyCH4V	TGCA	3 cut(s)	116, 387, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 71, 159, 400
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	4 cut(s)	558, 709, 729, 743
Hsp92I	GRCGYC	2 cut(s)	144, 567
Hsp92II	CATG	2 cut(s)	421, 726
HspAI	GCGC	3 cut(s)	165, 397, 567
KasI	GGCGCC	1 cut(s)	566
KpnI	GGTACC	1 cut(s)	485
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	286, 409, 435, 599
LmnI	GCTCC	1 cut(s)	739
MaeII	ACGT	4 cut(s)	558, 709, 729, 743
MaeIII	GTNAC	6 cut(s)	40, 140, 325, 368, 550, 691
MalI	GATC	4 cut(s)	288, 411, 437, 601
MboI	GATC	4 cut(s)	286, 409, 435, 599
MboII	GAAGA	2 cut(s)	505, 705
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	1 cut(s)	352
Mly113I	GGCGCC	1 cut(s)	567
MlyI	GAGTC	2 cut(s)	634, 699
MmeI	TCCRAC	3 cut(s)	470, 608, 678
MnlI	CCTC	7 cut(s)	157, 371, 440, 494, 612, 709, 730
MroNI	GCCGGC	1 cut(s)	563
MseI	TTAA	3 cut(s)	59, 273, 579
MslI	CAYNNNNRTG	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	6 cut(s)	84, 150, 305, 564, 570, 768
MspR9I	CCNGG	2 cut(s)	84, 306
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	3 cut(s)	167, 397, 399
MwoI	GCNNNNNNNGC	4 cut(s)	44, 71, 159, 400
NaeI	GCCGGC	1 cut(s)	565
NarI	GGCGCC	1 cut(s)	567
NciI	CCSGG	2 cut(s)	84, 306
NdeII	GATC	4 cut(s)	286, 409, 435, 599
NgoMIV	GCCGGC	1 cut(s)	563
NlaIII	CATG	2 cut(s)	421, 726
NlaIV	GGNNCC	2 cut(s)	483, 568
NmeAIII	GCCGAG	1 cut(s)	390
NmuCI	GTSAC	4 cut(s)	140, 325, 368, 691
PcsI	WCGNNNNNNNCGW	2 cut(s)	11, 588
PctI	GAATGC	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	246, 510, 525
PfoI	TCCNGGA	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	164, 217, 396
PleI	GAGTC	2 cut(s)	633, 698
PluTI	GGCGCC	1 cut(s)	570
PmaCI	CACGTG	1 cut(s)	744
PmlI	CACGTG	1 cut(s)	744
PpsI	GAGTC	2 cut(s)	633, 698
Ppu21I	YACGTR	1 cut(s)	744
Psp1406I	AACGTT	2 cut(s)	558, 729
PspCI	CACGTG	1 cut(s)	744
PspN4I	GGNNCC	2 cut(s)	483, 568
PspPI	GGNCC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	4 cut(s)	176, 188, 280, 483
RsaNI	GTAC	4 cut(s)	175, 187, 279, 482
RseI	CAYNNNNRTG	1 cut(s)	422
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SaqAI	TTAA	3 cut(s)	59, 273, 579
SatI	GCNGC	3 cut(s)	163, 216, 395
Sau3AI	GATC	4 cut(s)	286, 409, 435, 599
Sau96I	GGNCC	1 cut(s)	101
SchI	GAGTC	2 cut(s)	634, 699
ScrFI	CCNGG	2 cut(s)	84, 306
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	7 cut(s)	254, 487, 561, 712, 722, 732, 746
SfoI	GGCGCC	1 cut(s)	568
SinI	GGWCC	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	1 cut(s)	352
SsiI	CCGC	8 cut(s)	63, 99, 162, 215, 347, 392, 395, 696
SspDI	GGCGCC	1 cut(s)	566
StyD4I	CCNGG	2 cut(s)	82, 304
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	6 cut(s)	95, 105, 134, 203, 449, 517
TaiI	ACGT	4 cut(s)	561, 712, 732, 746
TaqI	TCGA	1 cut(s)	781
TaqII	GACCGA	2 cut(s)	428, 720
TasI	AATT	1 cut(s)	352
TatI	WGTACW	2 cut(s)	186, 278
TauI	GCSGC	3 cut(s)	165, 218, 397
TfiI	GAWTC	3 cut(s)	246, 510, 525
Tru1I	TTAA	3 cut(s)	59, 273, 579
Tru9I	TTAA	3 cut(s)	59, 273, 579
TscAI	CASTG	3 cut(s)	100, 145, 232
TseFI	GTSAC	4 cut(s)	140, 325, 368, 691
Tsp45I	GTSAC	4 cut(s)	140, 325, 368, 691
TspGWI	ACGGA	4 cut(s)	258, 390, 537, 597
TspRI	CASTG	3 cut(s)	100, 145, 232
VpaK11BI	GGWCC	1 cut(s)	101
XagI	CCTNNNNNAGG	1 cut(s)	475
XapI	RAATTY	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.