pycom12g13760

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015821
Physical Location & Seq
Reverse (-)
16253108 .. 16255225
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g13760.4

Sequence Viewer

Length: 966 bp
ATGAAGAGAGCCCATGTGTGGTTGGGCATTAATTATATCCAGACCACTGATGCCCTGCTCGCAACCTCCATAAGTACCCCCACCTTCTTCCCGCTTTCTATTCGCCCCAACGCCAATCCTATATCCATCACTCTCTCTTCCTTCTGCTTTCTCACTCCTTTCTCTCCCTCTCTGACTCTCTCTCCGGCAATGGCTTTCCTTCGCATGCTCTGCATTGCTTCCCTGCTCTCGCTCTTCATGGCGGCCAACGCCAGAATCCCAGGGGTTTACACTGGTGGCGCATGGGAGGGCGCCCATGCCACCTTCTACGGCGGCAGCGACGCCTCTGGCACCATGGGTGGCGCTTGCGGGTACGGCAACCTCTACAGCCAGGGCTACGGCGTCAACACGGCTGCGCTTAGCACTGCTCTGTTCAACAATGGCCTCAGCTGCGGCGCCTGCTTTGAGATTAAGTGCGGCGACGACCCCAGGTGGTGCCACCCAGGCAACCCCTCCATCTTCGTCACCGCCACCAACTTCTGCCCTCCTAACTTCGCTCAGCCCAGCGACGACGGCGGCTGGTGCAACCCTCCCCGCACTCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACAAGGCCGGCATCGTCCCCGTCTCTTACCGCCGAGTTCCGTGCAGAAAGCAAGGCGGAGTGAGATTCACAATTAACGGTTTCCGTTACTTCAACCTGGTTCTGATCATCAACGTCGCGGGCGCAGGGGATATCGTGAGGGTGAGCGTGAAAGGCGCGAACACGGGGTGGATGCCGATGAGCCGCAACTGGGGGCAAAACTGGCAATCCAACGCAGACCTGGTGGGCCAGACCCTGTCCTTCAGAGTCACGGGCAGTGACAGGCGCACCTCCACTACCCTCAACGTGGCGCCCGCTCATTGGCAGTTCGGACAAACTTTCACCGGGAAGAATTTCCGCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

322

Amino Acids

34.72

Weight (kDa)

9.36

Isoelectric Point (pI)

33.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37640 AT2G37640 AT5G02260
fragaria_vesca FvH4_6g13610
malus_domestica MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica Prupe.6G256500_v2.0.a1
pyrus_communis pycom04g11810 pycom12g13760
rosa_chinensis RchiOBHm_Chr3g0466461
rosa_laevigata RLG00000024572
rosa_multiflora Rmu_sc0003332.1_g000023
rosa_rugosa Rorug03G0082100
rosa_samantha Rh3DG150700
rosa_wichuraiana Rw3G012170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 5 cut(s) 290, 329, 434, 474, 910
AccBSI CCGCTC 1 cut(s) 917
AccII CGCG 3 cut(s) 740, 779, 960
AcoI YGGCCR 1 cut(s) 243
AcsI RAATTY 1 cut(s) 952
AcuI CTGAAG 1 cut(s) 847
AcyI GRCGYC 5 cut(s) 291, 321, 381, 435, 911
AdeI CACNNNGTG 1 cut(s) 789
AfaI GTAC 3 cut(s) 76, 353, 623
AfiI CCNNNNNNNGG 4 cut(s) 18, 811, 907, 921
AgsI TTSAA 2 cut(s) 415, 715
AjnI CCWGG 6 cut(s) 259, 369, 467, 481, 717, 840
AluBI AGCT 1 cut(s) 429
AluI AGCT 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 649
AlwNI CAGNNNCTG 1 cut(s) 856
AoxI GGCC 4 cut(s) 243, 421, 627, 847
ApeKI GCWGC 3 cut(s) 315, 392, 429
ApoI RAATTY 1 cut(s) 952
AseI ATTAAT 1 cut(s) 30
Asp700I GAANNNNTTC 1 cut(s) 953
AspLEI GCGC 9 cut(s) 281, 293, 344, 397, 437, 746, 779, 888, 913
AspS9I GGNCC 1 cut(s) 847
AsuC2I CCSGG 1 cut(s) 946
AsuHPI GGTGA 3 cut(s) 496, 775, 934
BanI GGYRCC 5 cut(s) 290, 329, 434, 474, 910
BanII GRGCYC 1 cut(s) 13
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 3 cut(s) 327, 379, 416
BccI CCATC 2 cut(s) 134, 503
BceAI ACGGC 5 cut(s) 325, 370, 394, 405, 568
BcgI CGANNNNNNTGC 4 cut(s) 565, 599, 645, 679
BciT130I CCWGG 6 cut(s) 261, 371, 469, 483, 719, 842
BclI TGATCA 1 cut(s) 726
BcnI CCSGG 1 cut(s) 946
BcoDI GTCTC 1 cut(s) 649
BfmI CTRYAG 1 cut(s) 364
BfoI RGCGCY 4 cut(s) 294, 345, 438, 914
BglI GCCNNNNNGGC 1 cut(s) 483
BisI GCNGC 9 cut(s) 243, 313, 316, 393, 430, 433, 457, 556, 805
BlpI GCTNAGC 2 cut(s) 398, 537
BlsI GCNGC 9 cut(s) 244, 314, 317, 394, 431, 434, 458, 557, 806
Bme1390I CCNGG 7 cut(s) 261, 371, 469, 483, 719, 842, 946
BmgT120I GGNCC 1 cut(s) 847
BmiI GGNNCC 5 cut(s) 292, 331, 436, 476, 912
BmrFI CCNGG 7 cut(s) 261, 371, 469, 483, 719, 842, 946
BmrI ACTGGG 1 cut(s) 820
BmsI GCATC 3 cut(s) 40, 642, 783
BmuI ACTGGG 1 cut(s) 820
Bpu10I CCTNAGC 1 cut(s) 425
Bpu1102I GCTNAGC 2 cut(s) 398, 537
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 946
BsaHI GRCGYC 5 cut(s) 291, 321, 381, 435, 911
BsaJI CCNNGG 6 cut(s) 259, 260, 333, 370, 467, 481
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bsc4I CCNNNNNNNGG 4 cut(s) 18, 811, 907, 921
Bse118I RCCGGY 1 cut(s) 629
Bse1I ACTGG 3 cut(s) 277, 815, 827
Bse3DI GCAATG 2 cut(s) 195, 213
BseBI CCWGG 6 cut(s) 261, 371, 469, 483, 719, 842
BseDI CCNNGG 6 cut(s) 259, 260, 333, 370, 467, 481
BseGI GGATG 1 cut(s) 798
BseLI CCNNNNNNNGG 4 cut(s) 18, 811, 907, 921
BseMI GCAATG 2 cut(s) 195, 213
BseMII CTCAG 2 cut(s) 439, 551
BseNI ACTGG 3 cut(s) 277, 815, 827
BseXI GCAGC 3 cut(s) 327, 379, 416
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 685
Bsh1236I CGCG 3 cut(s) 740, 779, 960
BshFI GGCC 4 cut(s) 245, 423, 629, 849
BshNI GGYRCC 5 cut(s) 290, 329, 434, 474, 910
BsiSI CCGG 3 cut(s) 185, 630, 945
BslFI GGGAC 1 cut(s) 623
BslI CCNNNNNNNGG 4 cut(s) 18, 811, 907, 921
BsmAI GTCTC 1 cut(s) 649
BsmBI CGTCTC 1 cut(s) 649
BsmFI GGGAC 1 cut(s) 623
BsnI GGCC 4 cut(s) 245, 423, 629, 849
Bsp1286I GDGCHC 1 cut(s) 13
Bsp143I GATC 2 cut(s) 612, 726
Bsp1720I GCTNAGC 2 cut(s) 398, 537
Bsp19I CCATGG 1 cut(s) 333
BspANI GGCC 4 cut(s) 245, 423, 629, 849
BspCNI CTCAG 2 cut(s) 438, 550
BspFNI CGCG 3 cut(s) 740, 779, 960
BspLI GGNNCC 5 cut(s) 292, 331, 436, 476, 912
BspQI GCTCTTC 1 cut(s) 239
BspT107I GGYRCC 5 cut(s) 290, 329, 434, 474, 910
BsrBI CCGCTC 1 cut(s) 917
BsrDI GCAATG 2 cut(s) 195, 213
BsrFI RCCGGY 1 cut(s) 629
BsrI ACTGG 3 cut(s) 277, 815, 827
BssAI RCCGGY 1 cut(s) 629
BssECI CCNNGG 6 cut(s) 259, 260, 333, 370, 467, 481
BssMI GATC 2 cut(s) 612, 726
BssNI GRCGYC 5 cut(s) 291, 321, 381, 435, 911
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 6 cut(s) 261, 371, 469, 483, 719, 842
Bst4CI ACNGT 1 cut(s) 701
Bst6I CTCTTC 2 cut(s) 142, 239
BstACI GRCGYC 5 cut(s) 291, 321, 381, 435, 911
BstAPI GCANNNNNTGC 1 cut(s) 210
BstC8I GCNNGC 7 cut(s) 60, 206, 346, 439, 631, 742, 915
BstDEI CTNAG 3 cut(s) 398, 425, 537
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 798
BstFNI CGCG 3 cut(s) 740, 779, 960
BstH2I RGCGCY 4 cut(s) 294, 345, 438, 914
BstHHI GCGC 9 cut(s) 281, 293, 344, 397, 437, 746, 779, 888, 913
BstKTI GATC 2 cut(s) 615, 729
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 2 cut(s) 612, 726
BstNI CCWGG 6 cut(s) 261, 371, 469, 483, 719, 842
BstNSI RCATGY 1 cut(s) 208
BstSCI CCNGG 7 cut(s) 259, 369, 467, 481, 717, 840, 944
BstSFI CTRYAG 1 cut(s) 364
BstUI CGCG 3 cut(s) 740, 779, 960
BstV1I GCAGC 3 cut(s) 327, 379, 416
BsuRI GGCC 4 cut(s) 245, 423, 629, 849
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 798
BtsI GCAGTG 2 cut(s) 402, 883
BtsIMutI CAGTG 4 cut(s) 45, 270, 402, 883
Cac8I GCNNGC 7 cut(s) 60, 206, 346, 439, 631, 742, 915
CaiI CAGNNNCTG 1 cut(s) 856
CfoI GCGC 9 cut(s) 281, 293, 344, 397, 437, 746, 779, 888, 913
Cfr10I RCCGGY 1 cut(s) 629
Cfr13I GGNCC 1 cut(s) 847
CseI GACGC 3 cut(s) 329, 370, 949
CsiI ACCWGGT 2 cut(s) 717, 840
Csp6I GTAC 3 cut(s) 75, 352, 622
CviAII CATG 8 cut(s) 14, 205, 238, 282, 296, 334, 595, 601
CviQI GTAC 3 cut(s) 75, 352, 622
DdeI CTNAG 3 cut(s) 398, 425, 537
DinI GGCGCC 3 cut(s) 292, 436, 912
DpnI GATC 2 cut(s) 614, 728
DpnII GATC 2 cut(s) 612, 726
DraIII CACNNNGTG 1 cut(s) 789
EaeI YGGCCR 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 142, 239
EarI CTCTTC 2 cut(s) 142, 239
EciI GGCGGA 1 cut(s) 693
Eco130I CCWWGG 1 cut(s) 333
Eco24I GRGCYC 1 cut(s) 13
Eco32I GATATC 1 cut(s) 754
Eco57I CTGAAG 1 cut(s) 847
EcoRII CCWGG 6 cut(s) 259, 369, 467, 481, 717, 840
EcoRV GATATC 1 cut(s) 754
EcoT14I CCWWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 13
EgeI GGCGCC 3 cut(s) 292, 436, 912
EheI GGCGCC 3 cut(s) 292, 436, 912
ErhI CCWWGG 1 cut(s) 333
Esp3I CGTCTC 1 cut(s) 649
FaeI CATG 8 cut(s) 17, 208, 241, 285, 299, 337, 598, 604
FaqI GGGAC 1 cut(s) 623
FatI CATG 8 cut(s) 13, 204, 237, 281, 295, 333, 594, 600
FauI CCCGC 5 cut(s) 99, 341, 581, 733, 922
FbaI TGATCA 1 cut(s) 726
Fnu4HI GCNGC 9 cut(s) 243, 313, 316, 393, 430, 433, 457, 556, 805
FokI GGATG 1 cut(s) 805
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 9 cut(s) 243, 313, 316, 393, 430, 433, 457, 556, 805
GlaI GCGC 9 cut(s) 280, 292, 343, 396, 436, 745, 778, 887, 912
GluI GCNGC 9 cut(s) 243, 313, 316, 393, 430, 433, 457, 556, 805
GsaI CCCAGC 1 cut(s) 546
HaeII RGCGCY 4 cut(s) 294, 345, 438, 914
HaeIII GGCC 4 cut(s) 245, 423, 629, 849
HapII CCGG 3 cut(s) 185, 630, 945
HgaI GACGC 3 cut(s) 329, 370, 949
HhaI GCGC 9 cut(s) 281, 293, 344, 397, 437, 746, 779, 888, 913
Hin1I GRCGYC 5 cut(s) 291, 321, 381, 435, 911
Hin1II CATG 8 cut(s) 17, 208, 241, 285, 299, 337, 598, 604
Hin6I GCGC 9 cut(s) 279, 291, 342, 395, 435, 744, 777, 886, 911
HinP1I GCGC 9 cut(s) 279, 291, 342, 395, 435, 744, 777, 886, 911
HincII GTYRAC 1 cut(s) 385
HindII GTYRAC 1 cut(s) 385
HinfI GANTC 4 cut(s) 175, 255, 687, 867
HpaII CCGG 3 cut(s) 185, 630, 945
HphI GGTGA 3 cut(s) 496, 775, 934
Hpy166II GTNNAC 2 cut(s) 268, 385
Hpy188I TCNGA 4 cut(s) 174, 726, 866, 932
Hpy188III TCNNGA 3 cut(s) 40, 610, 757
Hpy8I GTNNAC 2 cut(s) 268, 385
Hpy99I CGWCG 5 cut(s) 323, 464, 551, 554, 740
HpyAV CCTTC 5 cut(s) 94, 151, 209, 313, 871
HpyCH4III ACNGT 1 cut(s) 701
HpyCH4IV ACGT 2 cut(s) 735, 906
HpyCH4V TGCA 3 cut(s) 213, 564, 666
HpyF3I CTNAG 3 cut(s) 398, 425, 537
HpySE526I ACGT 2 cut(s) 735, 906
Hsp92I GRCGYC 5 cut(s) 291, 321, 381, 435, 911
Hsp92II CATG 8 cut(s) 17, 208, 241, 285, 299, 337, 598, 604
HspAI GCGC 9 cut(s) 279, 291, 342, 395, 435, 744, 777, 886, 911
KasI GGCGCC 3 cut(s) 290, 434, 910
KroI GCCGGC 1 cut(s) 629
KroNI GCCGGC 1 cut(s) 631
Ksp22I TGATCA 1 cut(s) 726
Kzo9I GATC 2 cut(s) 612, 726
LguI GCTCTTC 1 cut(s) 239
Lsp1109I GCAGC 3 cut(s) 327, 379, 416
LweI GCATC 3 cut(s) 40, 642, 783
MabI ACCWGGT 2 cut(s) 717, 840
MaeII ACGT 2 cut(s) 735, 906
MaeIII GTNAC 4 cut(s) 502, 707, 868, 878
MalI GATC 2 cut(s) 614, 728
MbiI CCGCTC 1 cut(s) 917
MboI GATC 2 cut(s) 612, 726
MboII GAAGA 6 cut(s) 16, 79, 129, 226, 490, 961
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 3 cut(s) 31, 693, 952
Mly113I GGCGCC 3 cut(s) 291, 435, 911
MlyI GAGTC 2 cut(s) 169, 876
MmeI TCCRAC 1 cut(s) 855
MroNI GCCGGC 1 cut(s) 629
MroXI GAANNNNTTC 1 cut(s) 953
MseI TTAA 3 cut(s) 30, 450, 696
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 1 cut(s) 429
MspI CCGG 3 cut(s) 185, 630, 945
MspR9I CCNGG 7 cut(s) 261, 371, 469, 483, 719, 842, 946
MvaI CCWGG 6 cut(s) 261, 371, 469, 483, 719, 842
MvnI CGCG 3 cut(s) 740, 779, 960
NaeI GCCGGC 1 cut(s) 631
NarI GGCGCC 3 cut(s) 291, 435, 911
NciI CCSGG 1 cut(s) 946
NcoI CCATGG 1 cut(s) 333
NdeII GATC 2 cut(s) 612, 726
NgoMIV GCCGGC 1 cut(s) 629
NlaIII CATG 8 cut(s) 17, 208, 241, 285, 299, 337, 598, 604
NlaIV GGNNCC 5 cut(s) 292, 331, 436, 476, 912
NmeAIII GCCGAG 2 cut(s) 643, 680
NmuCI GTSAC 3 cut(s) 502, 868, 878
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PasI CCCWGGG 1 cut(s) 260
PciSI GCTCTTC 1 cut(s) 239
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PdiI GCCGGC 1 cut(s) 631
PdmI GAANNNNTTC 1 cut(s) 953
PfeI GAWTC 2 cut(s) 255, 687
PflFI GACNNNGTC 1 cut(s) 856
PkrI GCNGC 9 cut(s) 244, 314, 317, 394, 431, 434, 458, 557, 806
PleI GAGTC 2 cut(s) 169, 875
PluTI GGCGCC 3 cut(s) 294, 438, 914
PpsI GAGTC 2 cut(s) 169, 875
PshBI ATTAAT 1 cut(s) 30
Psp6I CCWGG 6 cut(s) 259, 369, 467, 481, 717, 840
PspFI CCCAGC 1 cut(s) 542
PspGI CCWGG 6 cut(s) 259, 369, 467, 481, 717, 840
PspN4I GGNNCC 5 cut(s) 292, 331, 436, 476, 912
PspPI GGNCC 1 cut(s) 847
PstNI CAGNNNCTG 1 cut(s) 856
PsyI GACNNNGTC 1 cut(s) 856
PvuII CAGCTG 1 cut(s) 429
RsaI GTAC 3 cut(s) 76, 353, 623
RsaNI GTAC 3 cut(s) 75, 352, 622
RseI CAYNNNNRTG 1 cut(s) 599
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 3 cut(s) 30, 450, 696
SatI GCNGC 9 cut(s) 243, 313, 316, 393, 430, 433, 457, 556, 805
Sau3AI GATC 2 cut(s) 612, 726
Sau96I GGNCC 1 cut(s) 847
SchI GAGTC 2 cut(s) 169, 876
ScrFI CCNGG 7 cut(s) 261, 371, 469, 483, 719, 842, 946
SduI GDGCHC 1 cut(s) 13
SexAI ACCWGGT 2 cut(s) 717, 840
SfaNI GCATC 3 cut(s) 40, 642, 783
SfcI CTRYAG 1 cut(s) 364
SfoI GGCGCC 3 cut(s) 292, 436, 912
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SphI GCATGC 1 cut(s) 208
Sse9I AATT 3 cut(s) 31, 693, 952
SspDI GGCGCC 3 cut(s) 290, 434, 910
StyD4I CCNGG 7 cut(s) 259, 369, 467, 481, 717, 840, 944
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 701
TaiI ACGT 2 cut(s) 738, 909
TaqI TCGA 1 cut(s) 585
TasI AATT 3 cut(s) 31, 693, 952
TatI WGTACW 1 cut(s) 621
TauI GCSGC 6 cut(s) 245, 315, 435, 459, 558, 807
TfiI GAWTC 2 cut(s) 255, 687
Tru1I TTAA 3 cut(s) 30, 450, 696
Tru9I TTAA 3 cut(s) 30, 450, 696
TscAI CASTG 4 cut(s) 52, 277, 409, 883
TseFI GTSAC 3 cut(s) 502, 868, 878
TseI GCWGC 3 cut(s) 315, 392, 429
Tsp45I GTSAC 3 cut(s) 502, 868, 878
TspDTI ATGAA 2 cut(s) 17, 226
TspGWI ACGGA 2 cut(s) 651, 695
TspRI CASTG 4 cut(s) 52, 277, 409, 883
Tth111I GACNNNGTC 1 cut(s) 856
VspI ATTAAT 1 cut(s) 30
XapI RAATTY 1 cut(s) 952
XceI RCATGY 1 cut(s) 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 838
XmnI GAANNNNTTC 1 cut(s) 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.