Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015821

Physical Location & Seq

Genomic Coordinates Forward (+)

463073 .. 465273

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G02260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCGGCGAAAGTAATTACATTTATGGCGGTTATGGTGGTTACTGCCTTTACGGCCAACGCCAAAATCCCCGGAGTTTACACCGGTGGTCCTTGGATCAATGCTCACGCCACCTTCTACGGTGAAGCTGACGCTTCCGGCACTATGGGTGGTGCGTGTGGGTACGGGAATTTGTATAGCCAAGGTTACGGAGTGAACACGGCGGCTTTAAGCACTGCCTTATTCAACAATGGTTTGAGTTGTGGCTCTTGCTTTGAGCTTAAGTGTATCAATGATCCAGGATGGTGTCTTCCTGGAAACCCATCAATTCTTATCACCGCCACTAATTTCTGCCCTCCTAACTTTAATCAAGCTAGCGACAATGGTGGTTGGTGTAATCCTCCTCGTGAGCACTTTGATCTCGCTATGCCTATGTTTCTTTCCATCGCTAAGTATAAGGCTGGTATCGTCCCCGTCTCTTACCGCAGGATCCCATGTAGGAAGAAGGGAGGAATCAGATTCACAATCAATGGATTCAAGTACTTCAACTTGGTGCTGGTCACTAACGTAGCCGGAGCTGGAGACGTCATTAAGGTGAGTGTGAAAGGATCCAACACACAATGGTTAGATCTGAGCCGGAACTGGGGACAAAACTGGCAATCCAACGCACTTCTTGTCGGCCAATCTCTTTCTTTCCGAGTCAAAACCTCTGATGGCCGAAGCTCCACCTCCAACAACATTGCTCCCAGTAACTGGCAATTTGGCCAGACCTACTCCGGCAAGAACTTCCGCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016020 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

258

Amino Acids

27.75

Weight (kDa)

9.4

Isoelectric Point (pI)

21.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	36 - 160	2.1e-09	EXPB1-like domain 1
DPBB_1	PF03330	67 - 154	2.7e-20	Lytic transglycolase
Expansin_C	PF01357	165 - 242	2.2e-28	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015821)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37640 AT2G37640 AT5G02260
fragaria_vesca	FvH4_6g13610
malus_domestica	MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica	Prupe.6G256500_v2.0.a1
pyrus_communis	pycom04g11810 pycom12g13760
rosa_chinensis	RchiOBHm_Chr3g0466461
rosa_laevigata	RLG00000024572
rosa_multiflora	Rmu_sc0003332.1_g000023
rosa_rugosa	Rorug03G0082100
rosa_samantha	Rh3DG150700
rosa_wichuraiana	Rw3G012170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	567
AccB7I	CCANNNNNTGG	1 cut(s)	732
AccII	CGCG	1 cut(s)	771
AciI	CCGC	6 cut(s)	5, 29, 203, 318, 463, 769
AclWI	GGATC	6 cut(s)	104, 269, 463, 476, 582, 595
AcoI	YGGCCR	4 cut(s)	54, 658, 694, 742
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	564
AfaI	GTAC	2 cut(s)	164, 521
AfiI	CCNNNNNNNGG	2 cut(s)	622, 732
AflII	CTTAAG	1 cut(s)	260
AgeI	ACCGGT	1 cut(s)	83
AgsI	TTSAA	3 cut(s)	226, 517, 526
AjnI	CCWGG	2 cut(s)	277, 292
AluBI	AGCT	5 cut(s)	128, 259, 353, 557, 702
AluI	AGCT	5 cut(s)	128, 259, 353, 557, 702
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	2 cut(s)	460, 555
AlwI	GGATC	6 cut(s)	104, 269, 463, 476, 582, 595
AlwNI	CAGNNNCTG	1 cut(s)	732
AoxI	GGCC	4 cut(s)	54, 658, 694, 742
ApoI	RAATTY	1 cut(s)	169
AsiGI	ACCGGT	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	134, 307, 586
AsuNHI	GCTAGC	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	89
BalI	TGGCCA	1 cut(s)	744
BamHI	GGATCC	2 cut(s)	468, 587
BauI	CACGAG	1 cut(s)	384
BbsI	GAAGAC	1 cut(s)	281
Bbv12I	GWGCWC	1 cut(s)	393
BccI	CCATC	4 cut(s)	276, 310, 431, 686
BceAI	ACGGC	2 cut(s)	69, 216
BciT130I	CCWGG	2 cut(s)	279, 294
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	460, 555
BfaI	CTAG	1 cut(s)	354
BfrI	CTTAAG	1 cut(s)	260
BglI	GCCNNNNNGGC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	607
BisI	GCNGC	2 cut(s)	6, 204
BlsI	GCNGC	2 cut(s)	7, 205
BmcAI	AGTACT	1 cut(s)	521
Bme1390I	CCNGG	3 cut(s)	72, 279, 294
Bme18I	GGWCC	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	470, 589
BmrFI	CCNGG	3 cut(s)	72, 279, 294
BmrI	ACTGGG	2 cut(s)	631, 720
BmtI	GCTAGC	1 cut(s)	357
BmuI	ACTGGG	2 cut(s)	631, 720
BpiI	GAAGAC	1 cut(s)	281
BpmI	CTGGAG	1 cut(s)	579
BpuMI	CCSGG	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	564
BsaJI	CCNNGG	3 cut(s)	70, 92, 181
BsaWI	WCCGGW	1 cut(s)	83
Bsc4I	CCNNNNNNNGG	2 cut(s)	622, 732
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	4 cut(s)	626, 638, 726, 737
Bse3DI	GCAATG	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	279, 294
BseDI	CCNNGG	3 cut(s)	70, 92, 181
BseGI	GGATG	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	622, 732
BseMI	GCAATG	1 cut(s)	717
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	4 cut(s)	626, 638, 726, 737
BseRI	GAGGAG	1 cut(s)	372
Bsh1236I	CGCG	1 cut(s)	771
BshFI	GGCC	4 cut(s)	56, 660, 696, 744
BshTI	ACCGGT	1 cut(s)	83
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	6 cut(s)	72, 84, 138, 552, 616, 756
BslFI	GGGAC	2 cut(s)	434, 639
BslI	CCNNNNNNNGG	2 cut(s)	622, 732
BsmAI	GTCTC	2 cut(s)	460, 555
BsmBI	CGTCTC	2 cut(s)	460, 555
BsmFI	GGGAC	2 cut(s)	434, 639
BsnI	GGCC	4 cut(s)	56, 660, 696, 744
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
BspACI	CCGC	6 cut(s)	5, 29, 203, 318, 463, 769
BspANI	GGCC	4 cut(s)	56, 660, 696, 744
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	1 cut(s)	771
BspLI	GGNNCC	2 cut(s)	470, 589
BspOI	GCTAGC	1 cut(s)	357
BspPI	GGATC	6 cut(s)	104, 269, 463, 476, 582, 595
BspTI	CTTAAG	1 cut(s)	260
BsrDI	GCAATG	1 cut(s)	717
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	4 cut(s)	626, 638, 726, 737
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	3 cut(s)	70, 92, 181
BssMI	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
BssNI	GRCGYC	1 cut(s)	564
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	2 cut(s)	92, 181
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	2 cut(s)	279, 294
Bst4CI	ACNGT	1 cut(s)	122
BstACI	GRCGYC	1 cut(s)	564
BstAFI	CTTAAG	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	355
BstDEI	CTNAG	2 cut(s)	429, 611
BstF5I	GGATG	1 cut(s)	287
BstFNI	CGCG	1 cut(s)	771
BstKTI	GATC	6 cut(s)	99, 277, 400, 471, 590, 610
BstMAI	GTCTC	2 cut(s)	460, 555
BstMBI	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	2 cut(s)	279, 294
BstSCI	CCNGG	3 cut(s)	70, 277, 292
BstUI	CGCG	1 cut(s)	771
BstV2I	GAAGAC	1 cut(s)	281
BstX2I	RGATCY	3 cut(s)	468, 587, 607
BstYI	RGATCY	3 cut(s)	468, 587, 607
BsuRI	GGCC	4 cut(s)	56, 660, 696, 744
BtgZI	GCGATG	1 cut(s)	409
BtsCI	GGATG	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	732
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	2 cut(s)	140, 760
Csp6I	GTAC	2 cut(s)	163, 520
CspAI	ACCGGT	1 cut(s)	83
CviAII	CATG	1 cut(s)	474
CviQI	GTAC	2 cut(s)	163, 520
DdeI	CTNAG	2 cut(s)	429, 611
DpnI	GATC	6 cut(s)	98, 276, 399, 470, 589, 609
DpnII	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
EaeI	YGGCCR	4 cut(s)	54, 658, 694, 742
Eco130I	CCWWGG	2 cut(s)	92, 181
Eco47I	GGWCC	1 cut(s)	89
EcoRII	CCWGG	2 cut(s)	277, 292
EcoT14I	CCWWGG	2 cut(s)	92, 181
ErhI	CCWWGG	2 cut(s)	92, 181
Esp3I	CGTCTC	2 cut(s)	460, 555
FaeI	CATG	1 cut(s)	477
FaiI	YATR	8 cut(s)	26, 35, 146, 177, 407, 413, 435, 475
FaqI	GGGAC	2 cut(s)	434, 639
FatI	CATG	1 cut(s)	473
Fnu4HI	GCNGC	2 cut(s)	6, 204
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	6, 204
FspBI	CTAG	1 cut(s)	354
GluI	GCNGC	2 cut(s)	6, 204
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	4 cut(s)	56, 660, 696, 744
HapII	CCGG	6 cut(s)	72, 84, 138, 552, 616, 756
HgaI	GACGC	2 cut(s)	140, 760
Hin1I	GRCGYC	1 cut(s)	564
Hin1II	CATG	1 cut(s)	477
HinfI	GANTC	4 cut(s)	492, 498, 513, 678
HpaII	CCGG	6 cut(s)	72, 84, 138, 552, 616, 756
HphI	GGTGA	3 cut(s)	134, 307, 586
Hpy166II	GTNNAC	2 cut(s)	79, 196
Hpy188I	TCNGA	5 cut(s)	497, 612, 677, 691, 776
Hpy188III	TCNNGA	1 cut(s)	386
Hpy8I	GTNNAC	2 cut(s)	79, 196
HpyAV	CCTTC	2 cut(s)	124, 478
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	2 cut(s)	546, 564
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	2 cut(s)	429, 611
HpySE526I	ACGT	2 cut(s)	546, 564
Hsp92I	GRCGYC	1 cut(s)	564
Hsp92II	CATG	1 cut(s)	477
Kzo9I	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
LmnI	GCTCC	3 cut(s)	554, 707, 727
MaeI	CTAG	1 cut(s)	354
MaeII	ACGT	2 cut(s)	546, 564
MaeIII	GTNAC	4 cut(s)	40, 185, 538, 728
MalI	GATC	6 cut(s)	98, 276, 399, 470, 589, 609
MboI	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
MboII	GAAGA	2 cut(s)	281, 493
MflI	RGATCY	3 cut(s)	468, 587, 607
MhlI	GDGCHC	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	744
MluCI	AATT	5 cut(s)	15, 169, 306, 325, 737
MluNI	TGGCCA	1 cut(s)	744
MlyI	GAGTC	1 cut(s)	687
MmeI	TCCRAC	3 cut(s)	615, 666, 735
MnlI	CCTC	6 cut(s)	345, 390, 393, 482, 697, 718
Mox20I	TGGCCA	1 cut(s)	744
MscI	TGGCCA	1 cut(s)	744
MseI	TTAA	4 cut(s)	209, 261, 345, 570
MslI	CAYNNNNRTG	1 cut(s)	572
Msp20I	TGGCCA	1 cut(s)	744
MspCI	CTTAAG	1 cut(s)	260
MspI	CCGG	6 cut(s)	72, 84, 138, 552, 616, 756
MspR9I	CCNGG	3 cut(s)	72, 279, 294
MvaI	CCWGG	2 cut(s)	279, 294
MvnI	CGCG	1 cut(s)	771
MwoI	GCNNNNNNNGC	1 cut(s)	53
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
NheI	GCTAGC	1 cut(s)	353
NlaIII	CATG	1 cut(s)	477
NlaIV	GGNNCC	2 cut(s)	470, 589
NmuCI	GTSAC	1 cut(s)	538
PfeI	GAWTC	3 cut(s)	492, 498, 513
PflMI	CCANNNNNTGG	1 cut(s)	732
PfoI	TCCNGGA	2 cut(s)	277, 292
PinAI	ACCGGT	1 cut(s)	83
PkrI	GCNGC	2 cut(s)	7, 205
PleI	GAGTC	1 cut(s)	686
PpsI	GAGTC	1 cut(s)	686
Psp6I	CCWGG	2 cut(s)	277, 292
PspGI	CCWGG	2 cut(s)	277, 292
PspN4I	GGNNCC	2 cut(s)	470, 589
PspPI	GGNCC	1 cut(s)	89
PstNI	CAGNNNCTG	1 cut(s)	732
PsuI	RGATCY	3 cut(s)	468, 587, 607
RsaI	GTAC	2 cut(s)	164, 521
RsaNI	GTAC	2 cut(s)	163, 520
RseI	CAYNNNNRTG	1 cut(s)	572
SaqAI	TTAA	4 cut(s)	209, 261, 345, 570
SatI	GCNGC	2 cut(s)	6, 204
Sau3AI	GATC	6 cut(s)	96, 274, 397, 468, 587, 607
Sau96I	GGNCC	1 cut(s)	89
ScaI	AGTACT	1 cut(s)	521
SchI	GAGTC	1 cut(s)	687
ScrFI	CCNGG	3 cut(s)	72, 279, 294
SduI	GDGCHC	1 cut(s)	393
SgrAI	CRCCGGYG	1 cut(s)	83
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	5 cut(s)	15, 169, 306, 325, 737
SsiI	CCGC	6 cut(s)	5, 29, 203, 318, 463, 769
SspMI	CTAG	1 cut(s)	354
StyD4I	CCNGG	3 cut(s)	70, 277, 292
StyI	CCWWGG	2 cut(s)	92, 181
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	2 cut(s)	549, 567
TasI	AATT	5 cut(s)	15, 169, 306, 325, 737
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	2 cut(s)	8, 206
TfiI	GAWTC	3 cut(s)	492, 498, 513
Tru1I	TTAA	4 cut(s)	209, 261, 345, 570
Tru9I	TTAA	4 cut(s)	209, 261, 345, 570
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	538
Tsp45I	GTSAC	1 cut(s)	538
TspGWI	ACGGA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	220
Van91I	CCANNNNNTGG	1 cut(s)	732
Vha464I	CTTAAG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	169
XspI	CTAG	1 cut(s)	354
ZraI	GACGTC	1 cut(s)	565
ZrmI	AGTACT	1 cut(s)	521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.