Prupe.6G256500_v2.0.a1

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015821
Physical Location & Seq
Reverse (-)
24927304 .. 24929312
2009 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G256500.1

Sequence Viewer

Length: 777 bp
ATGGCTTTCGTTCACATGCTCTGCATTGCTTCGCTATTGTCACTTTTCATGGCGGCCAACGCCAGAATCCCAGGCGTTTACACCGGCGGGCCATGGGAGGGCGCCCACGCCACCTTCTATGGCGGCAGCGACGCCTCTGGAACCATGGGCGGTGCTTGTGGGTACGGAAATCTCTACAGCGAGGGCTACGGCGTCAACACGGCGGCCCTAAGCACAGCTCTGTTCAACAATGGCCTCAGCTGCGGAGCCTGCTTTGAGATTAAGTGTGGAGATGACCCCAAATGGTGCCACCCAGGCAACCCGTCCATCTTCATCACTGCCACCAACTTCTGTCCTCCAAACTACGCTCTGCCCAACGACGATGGCGGCTGGTGCAACCCTCCTCGCACCCACTTCGACCTTGCCATGCCCATGTTTCTCCAGATCGCTGAGTACAAAGCTGGTATCGTCCCGGTCTCCTTCCGCCGAGTCCCATGTAGAAAGGAAGGCGGAGTGAGATTCACAATTAACGGCTTCCGTTACTTCAACTTGGTTCTAATCACCAACGTCGCGGGCGCAGGAGATATCGTGCGGGTGAGCGTTAAAGGCGCGAACACTGAGTGGATGCCGATGAGCCGCAACTGGGGACAAAACTGGCAATCCAATGCAGACCTCGTGGGTCAGACCCTGTCCTTTAGAGTCACGGGCAGCGACAGGCGTACCTCCACCTCATGGAACGTGGCACCCGGTCATTGGCAGTTCGGACAAACTTTTTCCGGGAAGAATTTCCGGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

259

Amino Acids

27.96

Weight (kDa)

8.59

Isoelectric Point (pI)

29.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37640 AT2G37640 AT5G02260
fragaria_vesca FvH4_6g13610
malus_domestica MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica Prupe.6G256500_v2.0.a1
pyrus_communis pycom04g11810 pycom12g13760
rosa_chinensis RchiOBHm_Chr3g0466461
rosa_laevigata RLG00000024572
rosa_multiflora Rmu_sc0003332.1_g000023
rosa_rugosa Rorug03G0082100
rosa_samantha Rh3DG150700
rosa_wichuraiana Rw3G012170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 101, 285, 721
AccB7I CCANNNNNTGG 1 cut(s) 711
AccII CGCG 2 cut(s) 551, 590
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 1 cut(s) 763
AcyI GRCGYC 3 cut(s) 102, 132, 192
AdeI CACNNNGTG 1 cut(s) 600
AfaI GTAC 3 cut(s) 164, 434, 700
AfiI CCNNNNNNNGG 4 cut(s) 98, 622, 711, 732
AgsI TTSAA 2 cut(s) 226, 526
AjnI CCWGG 2 cut(s) 70, 292
AluBI AGCT 3 cut(s) 218, 240, 440
AluI AGCT 3 cut(s) 218, 240, 440
Alw26I GTCTC 1 cut(s) 460
AlwNI CAGNNNCTG 1 cut(s) 667
AoxI GGCC 4 cut(s) 54, 89, 204, 232
ApeKI GCWGC 3 cut(s) 126, 240, 687
ApoI RAATTY 1 cut(s) 763
Asp700I GAANNNNTTC 1 cut(s) 764
AspLEI GCGC 3 cut(s) 104, 557, 590
AspS9I GGNCC 2 cut(s) 89, 205
AsuC2I CCSGG 4 cut(s) 452, 726, 757, 770
AsuHPI GGTGA 2 cut(s) 532, 586
BaeI ACNNNNGTAYC 2 cut(s) 682, 715
BanI GGYRCC 3 cut(s) 101, 285, 721
BauI CACGAG 1 cut(s) 653
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 138, 227, 699
BccI CCATC 2 cut(s) 314, 356
BceAI ACGGC 3 cut(s) 205, 216, 526
BcgI CGANNNNNNTGC 2 cut(s) 376, 410
BciT130I CCWGG 2 cut(s) 72, 294
BcnI CCSGG 4 cut(s) 452, 726, 757, 770
BcoDI GTCTC 1 cut(s) 460
BfmI CTRYAG 1 cut(s) 175
BfoI RGCGCY 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 8 cut(s) 54, 124, 127, 204, 241, 367, 616, 688
BlsI GCNGC 8 cut(s) 55, 125, 128, 205, 242, 368, 617, 689
Bme1390I CCNGG 6 cut(s) 72, 294, 452, 726, 757, 770
BmgT120I GGNCC 2 cut(s) 89, 205
BmiI GGNNCC 5 cut(s) 103, 142, 247, 287, 723
BmrFI CCNGG 6 cut(s) 72, 294, 452, 726, 757, 770
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 404
Bpu10I CCTNAGC 2 cut(s) 209, 236
BpuMI CCSGG 4 cut(s) 452, 726, 757, 770
BsaHI GRCGYC 3 cut(s) 102, 132, 192
BsaI GGTCTC 1 cut(s) 460
BsaJI CCNNGG 4 cut(s) 70, 92, 144, 292
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 622, 711, 732
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 626, 638
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 2 cut(s) 72, 294
BseDI CCNNGG 4 cut(s) 70, 92, 144, 292
BseGI GGATG 1 cut(s) 609
BseLI CCNNNNNNNGG 4 cut(s) 98, 622, 711, 732
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 3 cut(s) 250, 420, 588
BseNI ACTGG 2 cut(s) 626, 638
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 3 cut(s) 138, 227, 699
Bsh1236I CGCG 2 cut(s) 551, 590
BshFI GGCC 4 cut(s) 56, 91, 206, 234
BshNI GGYRCC 3 cut(s) 101, 285, 721
BsiSI CCGG 5 cut(s) 84, 452, 726, 756, 769
BslFI GGGAC 3 cut(s) 434, 455, 639
BslI CCNNNNNNNGG 4 cut(s) 98, 622, 711, 732
BsmAI GTCTC 1 cut(s) 460
BsmFI GGGAC 3 cut(s) 434, 455, 639
BsnI GGCC 4 cut(s) 56, 91, 206, 234
Bso31I GGTCTC 1 cut(s) 460
Bsp143I GATC 1 cut(s) 423
Bsp19I CCATGG 2 cut(s) 92, 144
BspANI GGCC 4 cut(s) 56, 91, 206, 234
BspCNI CTCAG 3 cut(s) 249, 421, 589
BspFNI CGCG 2 cut(s) 551, 590
BspLI GGNNCC 5 cut(s) 103, 142, 247, 287, 723
BspT107I GGYRCC 3 cut(s) 101, 285, 721
BspTNI GGTCTC 1 cut(s) 460
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 626, 638
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 4 cut(s) 70, 92, 144, 292
BssMI GATC 1 cut(s) 423
BssNI GRCGYC 3 cut(s) 102, 132, 192
BssSI CACGAG 1 cut(s) 653
BssT1I CCWWGG 2 cut(s) 92, 144
Bst2BI CACGAG 1 cut(s) 653
Bst2UI CCWGG 2 cut(s) 72, 294
BstACI GRCGYC 3 cut(s) 102, 132, 192
BstC8I GCNNGC 3 cut(s) 89, 250, 553
BstDEI CTNAG 4 cut(s) 209, 236, 429, 597
BstDSI CCRYGG 2 cut(s) 92, 144
BstF5I GGATG 1 cut(s) 609
BstFNI CGCG 2 cut(s) 551, 590
BstH2I RGCGCY 1 cut(s) 105
BstHHI GCGC 3 cut(s) 104, 557, 590
BstKTI GATC 1 cut(s) 426
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 1 cut(s) 423
BstMWI GCNNNNNNNGC 6 cut(s) 59, 240, 249, 294, 372, 585
BstNI CCWGG 2 cut(s) 72, 294
BstNSI RCATGY 1 cut(s) 19
BstSCI CCNGG 6 cut(s) 70, 292, 450, 724, 755, 768
BstSFI CTRYAG 1 cut(s) 175
BstUI CGCG 2 cut(s) 551, 590
BstV1I GCAGC 3 cut(s) 138, 227, 699
BsuRI GGCC 4 cut(s) 56, 91, 206, 234
BtgI CCRYGG 2 cut(s) 92, 144
BtsCI GGATG 1 cut(s) 609
BtsI GCAGTG 1 cut(s) 315
BtsIMutI CAGTG 2 cut(s) 315, 594
Cac8I GCNNGC 3 cut(s) 89, 250, 553
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 3 cut(s) 104, 557, 590
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 2 cut(s) 89, 205
CseI GACGC 2 cut(s) 140, 181
Csp6I GTAC 3 cut(s) 163, 433, 699
CviAII CATG 8 cut(s) 16, 49, 93, 145, 406, 412, 474, 711
CviQI GTAC 3 cut(s) 163, 433, 699
DdeI CTNAG 4 cut(s) 209, 236, 429, 597
DinI GGCGCC 1 cut(s) 103
DpnI GATC 1 cut(s) 425
DpnII GATC 1 cut(s) 423
DraIII CACNNNGTG 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 54
EciI GGCGGA 2 cut(s) 452, 504
Eco130I CCWWGG 2 cut(s) 92, 144
Eco31I GGTCTC 1 cut(s) 460
Eco32I GATATC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 70, 292
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 2 cut(s) 92, 144
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 92, 144
FaeI CATG 8 cut(s) 19, 52, 96, 148, 409, 415, 477, 714
FaiI YATR 9 cut(s) 17, 50, 94, 120, 146, 407, 413, 475, 712
FaqI GGGAC 3 cut(s) 434, 455, 639
FatI CATG 8 cut(s) 15, 48, 92, 144, 405, 411, 473, 710
FauI CCCGC 3 cut(s) 80, 544, 564
Fnu4HI GCNGC 8 cut(s) 54, 124, 127, 204, 241, 367, 616, 688
FokI GGATG 1 cut(s) 616
Fsp4HI GCNGC 8 cut(s) 54, 124, 127, 204, 241, 367, 616, 688
GlaI GCGC 3 cut(s) 103, 556, 589
GluI GCNGC 8 cut(s) 54, 124, 127, 204, 241, 367, 616, 688
GsuI CTGGAG 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 105
HaeIII GGCC 4 cut(s) 56, 91, 206, 234
HapII CCGG 5 cut(s) 84, 452, 726, 756, 769
HgaI GACGC 2 cut(s) 140, 181
HhaI GCGC 3 cut(s) 104, 557, 590
Hin1I GRCGYC 3 cut(s) 102, 132, 192
Hin1II CATG 8 cut(s) 19, 52, 96, 148, 409, 415, 477, 714
Hin6I GCGC 3 cut(s) 102, 555, 588
HinP1I GCGC 3 cut(s) 102, 555, 588
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 66, 468, 498, 678
HpaII CCGG 5 cut(s) 84, 452, 726, 756, 769
HphI GGTGA 2 cut(s) 532, 586
Hpy166II GTNNAC 3 cut(s) 13, 79, 196
Hpy188I TCNGA 2 cut(s) 663, 743
Hpy188III TCNNGA 2 cut(s) 138, 421
Hpy8I GTNNAC 3 cut(s) 13, 79, 196
Hpy99I CGWCG 3 cut(s) 134, 362, 551
HpyAV CCTTC 3 cut(s) 124, 469, 479
HpyCH4IV ACGT 2 cut(s) 546, 717
HpyCH4V TGCA 3 cut(s) 24, 375, 647
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 240, 249, 294, 372, 585
HpyF3I CTNAG 4 cut(s) 209, 236, 429, 597
HpySE526I ACGT 2 cut(s) 546, 717
Hsp92I GRCGYC 3 cut(s) 102, 132, 192
Hsp92II CATG 8 cut(s) 19, 52, 96, 148, 409, 415, 477, 714
HspAI GCGC 3 cut(s) 102, 555, 588
KasI GGCGCC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 423
LmnI GCTCC 1 cut(s) 245
Lsp1109I GCAGC 3 cut(s) 138, 227, 699
LweI GCATC 1 cut(s) 594
MaeII ACGT 2 cut(s) 546, 717
MaeIII GTNAC 3 cut(s) 39, 518, 679
MalI GATC 1 cut(s) 425
MboI GATC 1 cut(s) 423
MboII GAAGA 2 cut(s) 301, 772
MluCI AATT 2 cut(s) 504, 763
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 2 cut(s) 477, 687
MroXI GAANNNNTTC 1 cut(s) 764
MseI TTAA 4 cut(s) 261, 507, 582, 775
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 5 cut(s) 84, 452, 726, 756, 769
MspR9I CCNGG 6 cut(s) 72, 294, 452, 726, 757, 770
MvaI CCWGG 2 cut(s) 72, 294
MvnI CGCG 2 cut(s) 551, 590
MwoI GCNNNNNNNGC 6 cut(s) 59, 240, 249, 294, 372, 585
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 4 cut(s) 452, 726, 757, 770
NcoI CCATGG 2 cut(s) 92, 144
NdeII GATC 1 cut(s) 423
NlaIII CATG 8 cut(s) 19, 52, 96, 148, 409, 415, 477, 714
NlaIV GGNNCC 5 cut(s) 103, 142, 247, 287, 723
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 2 cut(s) 39, 679
NspI RCATGY 1 cut(s) 19
PdmI GAANNNNTTC 1 cut(s) 764
PfeI GAWTC 2 cut(s) 66, 498
PflFI GACNNNGTC 1 cut(s) 667
PflMI CCANNNNNTGG 1 cut(s) 711
PfoI TCCNGGA 1 cut(s) 755
PkrI GCNGC 8 cut(s) 55, 125, 128, 205, 242, 368, 617, 689
PleI GAGTC 2 cut(s) 476, 686
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 2 cut(s) 476, 686
Psp6I CCWGG 2 cut(s) 70, 292
PspGI CCWGG 2 cut(s) 70, 292
PspN4I GGNNCC 5 cut(s) 103, 142, 247, 287, 723
PspPI GGNCC 2 cut(s) 89, 205
PstNI CAGNNNCTG 1 cut(s) 667
PsyI GACNNNGTC 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 3 cut(s) 164, 434, 700
RsaNI GTAC 3 cut(s) 163, 433, 699
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 4 cut(s) 261, 507, 582, 775
SatI GCNGC 8 cut(s) 54, 124, 127, 204, 241, 367, 616, 688
Sau3AI GATC 1 cut(s) 423
Sau96I GGNCC 2 cut(s) 89, 205
SchI GAGTC 2 cut(s) 477, 687
ScrFI CCNGG 6 cut(s) 72, 294, 452, 726, 757, 770
SfaNI GCATC 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 175
SfoI GGCGCC 1 cut(s) 103
SgrAI CRCCGGYG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 410
Sse9I AATT 2 cut(s) 504, 763
SspDI GGCGCC 1 cut(s) 101
StyD4I CCNGG 6 cut(s) 70, 292, 450, 724, 755, 768
StyI CCWWGG 2 cut(s) 92, 144
TaiI ACGT 2 cut(s) 549, 720
TaqI TCGA 1 cut(s) 396
TasI AATT 2 cut(s) 504, 763
TatI WGTACW 1 cut(s) 432
TauI GCSGC 5 cut(s) 56, 126, 206, 369, 618
TfiI GAWTC 2 cut(s) 66, 498
Tru1I TTAA 4 cut(s) 261, 507, 582, 775
Tru9I TTAA 4 cut(s) 261, 507, 582, 775
TscAI CASTG 2 cut(s) 322, 601
TseFI GTSAC 2 cut(s) 39, 679
TseI GCWGC 3 cut(s) 126, 240, 687
Tsp45I GTSAC 2 cut(s) 39, 679
TspDTI ATGAA 2 cut(s) 37, 301
TspGWI ACGGA 2 cut(s) 180, 506
TspRI CASTG 2 cut(s) 322, 601
Tth111I GACNNNGTC 1 cut(s) 667
Van91I CCANNNNNTGG 1 cut(s) 711
XapI RAATTY 1 cut(s) 763
XceI RCATGY 1 cut(s) 19
XmnI GAANNNNTTC 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.