pycom04g11810

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015821
Physical Location & Seq
Reverse (-)
14750179 .. 14751780
1602 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g11810.2

Sequence Viewer

Length: 777 bp
ATGGCCTCCCTTGGCGTGCTCTACATTGCTTTCATGCTCTCACTCTTCATGGCGGCCAACGCTAGAATTCCAGGAGTTTACACCGGTGGCCCATGGGAGGGCGCCCACGCCACCTTCTACGGTGGCAACGACGCCTCTGGAACCATGGGTGGCGCTTGCGGGTACGGAAACCTCTACAGCCAAGGCTACGGCGTGAACACGGCGGCACTGAGCACTGCTCTGTTCAACAATGGCCTTAGCTGCGGCGCCTGCTTCGAGATTAAGTGCGGCGACGACCCCAGGTGGTGCCACCCAGGCAACCCCTCCATCTTAGTCACCGCCACCAACTTCTGCCCTCCTAACTTCGCTCAGCCCAGCGACGACGGCGGGTGGTGCAACCCTCCCCGCACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACAAGGCCGGCATCGTCCCCGTCTCTTACCGCCGAGTTCCGTGCAGAAAGCAAGGCGGAGTGAGATTCACAATTAACGGTTTCCGTTACTTCAACCTGGTTCTGATCAACAACGTCGCGGGCGCAGGGGATATCGTGAGGGTGAGCGTAAAAGGCGCGAACACTGGGTGGATGCCGATGAGCCGCAACTGGGGACAAAACTGGCAATCCAACGCAGACCTGGTGGGCCAGACCCTGTCGTTTCGAGTCACGGGCAGTGACAGGCGCACATCCACCTCCCACAACGTGGCACCCGCTGATTGGCAGTTCGGACAAACTTTCACCGGCAAGAATTTCCGGGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

259

Amino Acids

27.83

Weight (kDa)

9.08

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37640 AT2G37640 AT5G02260
fragaria_vesca FvH4_6g13610
malus_domestica MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica Prupe.6G256500_v2.0.a1
pyrus_communis pycom04g11810 pycom12g13760
rosa_chinensis RchiOBHm_Chr3g0466461
rosa_laevigata RLG00000024572
rosa_multiflora Rmu_sc0003332.1_g000023
rosa_rugosa Rorug03G0082100
rosa_samantha Rh3DG150700
rosa_wichuraiana Rw3G012170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 101, 245, 285, 721
AccB7I CCANNNNNTGG 1 cut(s) 718
AccII CGCG 2 cut(s) 551, 590
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 66, 763
AcyI GRCGYC 3 cut(s) 102, 132, 246
AdeI CACNNNGTG 2 cut(s) 600, 718
AfaI GTAC 2 cut(s) 164, 434
AfiI CCNNNNNNNGG 5 cut(s) 97, 98, 622, 718, 732
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 226, 526
AjnI CCWGG 5 cut(s) 70, 278, 292, 528, 651
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw21I GWGCWC 2 cut(s) 21, 215
Alw26I GTCTC 1 cut(s) 460
AlwNI CAGNNNCTG 1 cut(s) 667
AoxI GGCC 6 cut(s) 3, 54, 88, 232, 438, 658
ApeKI GCWGC 1 cut(s) 240
ApoI RAATTY 2 cut(s) 66, 763
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 6 cut(s) 104, 155, 248, 557, 590, 699
AspS9I GGNCC 2 cut(s) 89, 658
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 3 cut(s) 307, 586, 745
BanI GGYRCC 4 cut(s) 101, 245, 285, 721
Bbv12I GWGCWC 2 cut(s) 21, 215
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 314
BceAI ACGGC 3 cut(s) 205, 216, 379
BcgI CGANNNNNNTGC 4 cut(s) 376, 410, 456, 490
BciT130I CCWGG 5 cut(s) 72, 280, 294, 530, 653
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 1 cut(s) 460
BfaI CTAG 1 cut(s) 63
BfmI CTRYAG 1 cut(s) 175
BfoI RGCGCY 3 cut(s) 105, 156, 249
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 6 cut(s) 54, 204, 241, 244, 268, 616
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 6 cut(s) 55, 205, 242, 245, 269, 617
Bme1390I CCNGG 6 cut(s) 72, 280, 294, 530, 653, 770
BmgT120I GGNCC 2 cut(s) 89, 658
BmiI GGNNCC 5 cut(s) 103, 142, 247, 287, 723
BmrFI CCNGG 6 cut(s) 72, 280, 294, 530, 653, 770
BmrI ACTGGG 2 cut(s) 606, 631
BmsI GCATC 2 cut(s) 453, 594
BmuI ACTGGG 2 cut(s) 606, 631
BplI GAGNNNNNCTC 2 cut(s) 202, 234
Bpu10I CCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 1 cut(s) 770
BsaHI GRCGYC 3 cut(s) 102, 132, 246
BsaJI CCNNGG 6 cut(s) 10, 92, 144, 181, 278, 292
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 5 cut(s) 97, 98, 622, 718, 732
Bse118I RCCGGY 3 cut(s) 83, 440, 755
Bse1I ACTGG 3 cut(s) 601, 626, 638
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 5 cut(s) 72, 280, 294, 530, 653
BseDI CCNNGG 6 cut(s) 10, 92, 144, 181, 278, 292
BseGI GGATG 2 cut(s) 609, 701
BseLI CCNNNNNNNGG 5 cut(s) 97, 98, 622, 718, 732
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 200, 362
BseNI ACTGG 3 cut(s) 601, 626, 638
BseXI GCAGC 1 cut(s) 227
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 496
Bsh1236I CGCG 2 cut(s) 551, 590
BshFI GGCC 6 cut(s) 5, 56, 90, 234, 440, 660
BshNI GGYRCC 4 cut(s) 101, 245, 285, 721
BshTI ACCGGT 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 21, 215
BsiSI CCGG 4 cut(s) 84, 441, 756, 769
BslFI GGGAC 2 cut(s) 434, 639
BslI CCNNNNNNNGG 5 cut(s) 97, 98, 622, 718, 732
BsmAI GTCTC 1 cut(s) 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 434, 639
BsnI GGCC 6 cut(s) 5, 56, 90, 234, 440, 660
Bsp1286I GDGCHC 2 cut(s) 21, 215
Bsp143I GATC 2 cut(s) 423, 537
Bsp1720I GCTNAGC 1 cut(s) 348
Bsp19I CCATGG 2 cut(s) 92, 144
BspANI GGCC 6 cut(s) 5, 56, 90, 234, 440, 660
BspCNI CTCAG 2 cut(s) 201, 361
BspFNI CGCG 2 cut(s) 551, 590
BspLI GGNNCC 5 cut(s) 103, 142, 247, 287, 723
BspT107I GGYRCC 4 cut(s) 101, 245, 285, 721
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 3 cut(s) 83, 440, 755
BsrI ACTGG 3 cut(s) 601, 626, 638
BssAI RCCGGY 3 cut(s) 83, 440, 755
BssECI CCNNGG 6 cut(s) 10, 92, 144, 181, 278, 292
BssMI GATC 2 cut(s) 423, 537
BssNI GRCGYC 3 cut(s) 102, 132, 246
BssT1I CCWWGG 4 cut(s) 10, 92, 144, 181
Bst2UI CCWGG 5 cut(s) 72, 280, 294, 530, 653
Bst4CI ACNGT 2 cut(s) 122, 512
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 3 cut(s) 102, 132, 246
BstC8I GCNNGC 5 cut(s) 17, 157, 250, 442, 553
BstDEI CTNAG 4 cut(s) 209, 236, 310, 348
BstDSI CCRYGG 2 cut(s) 92, 144
BstF5I GGATG 2 cut(s) 609, 701
BstFNI CGCG 2 cut(s) 551, 590
BstH2I RGCGCY 3 cut(s) 105, 156, 249
BstHHI GCGC 6 cut(s) 104, 155, 248, 557, 590, 699
BstKTI GATC 2 cut(s) 426, 540
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 2 cut(s) 423, 537
BstMWI GCNNNNNNNGC 7 cut(s) 59, 240, 249, 294, 363, 372, 585
BstNI CCWGG 5 cut(s) 72, 280, 294, 530, 653
BstSCI CCNGG 6 cut(s) 70, 278, 292, 528, 651, 768
BstSFI CTRYAG 1 cut(s) 175
BstUI CGCG 2 cut(s) 551, 590
BstV1I GCAGC 1 cut(s) 227
BsuRI GGCC 6 cut(s) 5, 56, 90, 234, 440, 660
BtgI CCRYGG 2 cut(s) 92, 144
BtsCI GGATG 2 cut(s) 609, 701
BtsI GCAGTG 2 cut(s) 213, 694
BtsIMutI CAGTG 4 cut(s) 206, 213, 594, 694
Cac8I GCNNGC 5 cut(s) 17, 157, 250, 442, 553
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 6 cut(s) 104, 155, 248, 557, 590, 699
Cfr10I RCCGGY 3 cut(s) 83, 440, 755
Cfr13I GGNCC 2 cut(s) 89, 658
CseI GACGC 1 cut(s) 140
CsiI ACCWGGT 2 cut(s) 528, 651
Csp6I GTAC 2 cut(s) 163, 433
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 6 cut(s) 34, 49, 93, 145, 406, 412
CviQI GTAC 2 cut(s) 163, 433
DdeI CTNAG 4 cut(s) 209, 236, 310, 348
DinI GGCGCC 2 cut(s) 103, 247
DpnI GATC 2 cut(s) 425, 539
DpnII GATC 2 cut(s) 423, 537
DraIII CACNNNGTG 2 cut(s) 600, 718
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 504
Eco130I CCWWGG 4 cut(s) 10, 92, 144, 181
Eco32I GATATC 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 5 cut(s) 70, 278, 292, 528, 651
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 4 cut(s) 10, 92, 144, 181
EgeI GGCGCC 2 cut(s) 103, 247
EheI GGCGCC 2 cut(s) 103, 247
ErhI CCWWGG 4 cut(s) 10, 92, 144, 181
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 6 cut(s) 37, 52, 96, 148, 409, 415
FaiI YATR 6 cut(s) 35, 50, 94, 146, 407, 413
FaqI GGGAC 2 cut(s) 434, 639
FatI CATG 6 cut(s) 33, 48, 92, 144, 405, 411
FauI CCCGC 5 cut(s) 152, 359, 392, 544, 733
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 6 cut(s) 54, 204, 241, 244, 268, 616
FokI GGATG 2 cut(s) 616, 688
Fsp4HI GCNGC 6 cut(s) 54, 204, 241, 244, 268, 616
FspBI CTAG 1 cut(s) 63
GlaI GCGC 6 cut(s) 103, 154, 247, 556, 589, 698
GluI GCNGC 6 cut(s) 54, 204, 241, 244, 268, 616
GsaI CCCAGC 1 cut(s) 357
HaeII RGCGCY 3 cut(s) 105, 156, 249
HaeIII GGCC 6 cut(s) 5, 56, 90, 234, 440, 660
HapII CCGG 4 cut(s) 84, 441, 756, 769
HgaI GACGC 1 cut(s) 140
HhaI GCGC 6 cut(s) 104, 155, 248, 557, 590, 699
Hin1I GRCGYC 3 cut(s) 102, 132, 246
Hin1II CATG 6 cut(s) 37, 52, 96, 148, 409, 415
Hin6I GCGC 6 cut(s) 102, 153, 246, 555, 588, 697
HinP1I GCGC 6 cut(s) 102, 153, 246, 555, 588, 697
HinfI GANTC 2 cut(s) 498, 678
HpaII CCGG 4 cut(s) 84, 441, 756, 769
HphI GGTGA 3 cut(s) 307, 586, 745
Hpy166II GTNNAC 2 cut(s) 79, 196
Hpy188I TCNGA 2 cut(s) 537, 743
Hpy188III TCNNGA 4 cut(s) 138, 256, 421, 568
Hpy8I GTNNAC 2 cut(s) 79, 196
Hpy99I CGWCG 5 cut(s) 134, 275, 362, 365, 551
HpyAV CCTTC 1 cut(s) 124
HpyCH4III ACNGT 2 cut(s) 122, 512
HpyCH4IV ACGT 2 cut(s) 546, 717
HpyCH4V TGCA 2 cut(s) 375, 477
HpyF10VI GCNNNNNNNGC 7 cut(s) 59, 240, 249, 294, 363, 372, 585
HpyF3I CTNAG 4 cut(s) 209, 236, 310, 348
HpySE526I ACGT 2 cut(s) 546, 717
Hsp92I GRCGYC 3 cut(s) 102, 132, 246
Hsp92II CATG 6 cut(s) 37, 52, 96, 148, 409, 415
HspAI GCGC 6 cut(s) 102, 153, 246, 555, 588, 697
KasI GGCGCC 2 cut(s) 101, 245
KroI GCCGGC 1 cut(s) 440
KroNI GCCGGC 1 cut(s) 442
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 2 cut(s) 423, 537
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 453, 594
MabI ACCWGGT 2 cut(s) 528, 651
MaeI CTAG 1 cut(s) 63
MaeII ACGT 2 cut(s) 546, 717
MaeIII GTNAC 4 cut(s) 313, 518, 679, 689
MalI GATC 2 cut(s) 425, 539
MboI GATC 2 cut(s) 423, 537
MboII GAAGA 1 cut(s) 37
MhlI GDGCHC 2 cut(s) 21, 215
MluCI AATT 3 cut(s) 66, 504, 763
Mly113I GGCGCC 2 cut(s) 102, 246
MlyI GAGTC 1 cut(s) 687
MmeI TCCRAC 1 cut(s) 666
MroNI GCCGGC 1 cut(s) 440
MseI TTAA 2 cut(s) 261, 507
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 728
MspI CCGG 4 cut(s) 84, 441, 756, 769
MspR9I CCNGG 6 cut(s) 72, 280, 294, 530, 653, 770
MvaI CCWGG 5 cut(s) 72, 280, 294, 530, 653
MvnI CGCG 2 cut(s) 551, 590
MwoI GCNNNNNNNGC 7 cut(s) 59, 240, 249, 294, 363, 372, 585
NaeI GCCGGC 1 cut(s) 442
NarI GGCGCC 2 cut(s) 102, 246
NciI CCSGG 1 cut(s) 770
NcoI CCATGG 2 cut(s) 92, 144
NdeII GATC 2 cut(s) 423, 537
NgoMIV GCCGGC 1 cut(s) 440
NlaIII CATG 6 cut(s) 37, 52, 96, 148, 409, 415
NlaIV GGNNCC 5 cut(s) 103, 142, 247, 287, 723
NmeAIII GCCGAG 2 cut(s) 454, 491
NmuCI GTSAC 3 cut(s) 313, 679, 689
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdiI GCCGGC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 498
PflFI GACNNNGTC 1 cut(s) 667
PflMI CCANNNNNTGG 1 cut(s) 718
PfoI TCCNGGA 1 cut(s) 70
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 6 cut(s) 55, 205, 242, 245, 269, 617
PleI GAGTC 1 cut(s) 686
PluTI GGCGCC 2 cut(s) 105, 249
PpsI GAGTC 1 cut(s) 686
Psp6I CCWGG 5 cut(s) 70, 278, 292, 528, 651
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 5 cut(s) 70, 278, 292, 528, 651
PspN4I GGNNCC 5 cut(s) 103, 142, 247, 287, 723
PspPI GGNCC 2 cut(s) 89, 658
PstNI CAGNNNCTG 1 cut(s) 667
PsyI GACNNNGTC 1 cut(s) 667
RsaI GTAC 2 cut(s) 164, 434
RsaNI GTAC 2 cut(s) 163, 433
RseI CAYNNNNRTG 1 cut(s) 410
SaqAI TTAA 2 cut(s) 261, 507
SatI GCNGC 6 cut(s) 54, 204, 241, 244, 268, 616
Sau3AI GATC 2 cut(s) 423, 537
Sau96I GGNCC 2 cut(s) 89, 658
SchI GAGTC 1 cut(s) 687
ScrFI CCNGG 6 cut(s) 72, 280, 294, 530, 653, 770
SduI GDGCHC 2 cut(s) 21, 215
SexAI ACCWGGT 2 cut(s) 528, 651
SfaNI GCATC 2 cut(s) 453, 594
SfcI CTRYAG 1 cut(s) 175
SfoI GGCGCC 2 cut(s) 103, 247
SgrAI CRCCGGYG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 3 cut(s) 66, 504, 763
SspDI GGCGCC 2 cut(s) 101, 245
SspMI CTAG 1 cut(s) 63
StyD4I CCNGG 6 cut(s) 70, 278, 292, 528, 651, 768
StyI CCWWGG 4 cut(s) 10, 92, 144, 181
TaaI ACNGT 2 cut(s) 122, 512
TaiI ACGT 2 cut(s) 549, 720
TaqI TCGA 3 cut(s) 255, 396, 676
TasI AATT 3 cut(s) 66, 504, 763
TatI WGTACW 1 cut(s) 432
TauI GCSGC 5 cut(s) 56, 206, 246, 270, 618
TfiI GAWTC 1 cut(s) 498
Tru1I TTAA 2 cut(s) 261, 507
Tru9I TTAA 2 cut(s) 261, 507
TscAI CASTG 4 cut(s) 213, 220, 601, 694
TseFI GTSAC 3 cut(s) 313, 679, 689
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 3 cut(s) 313, 679, 689
TspDTI ATGAA 2 cut(s) 22, 37
TspGWI ACGGA 3 cut(s) 180, 462, 506
TspRI CASTG 4 cut(s) 213, 220, 601, 694
Tth111I GACNNNGTC 1 cut(s) 667
Van91I CCANNNNNTGG 1 cut(s) 718
XapI RAATTY 2 cut(s) 66, 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
XspI CTAG 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.