Rorug03G0082100

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015821
Physical Location & Seq
Reverse (-)
6388966 .. 6393618
4653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0082100.1

Sequence Viewer

Length: 2106 bp
ATGGAAAAGCAGAAGCATCAGAATCCATCGAAGTCAGTGAACGACGCAGTGTACAAGCTGCAGCTGGCACTCCTCGACGGCGTCAAAACCCTAGACCACCTCTACTTAGCCGGCTCCATAATCTCCCGCTCCGACTACAACGACGTCGTTACGGAGCGATCCATCGCCGACCTATGCGGCTACCCTCTCTGCTCCAATGCCCTACCTTCCGAAGCTTCCCGTTCCCGCAAGGGTCACTATCGCATTTCGCTCAAGGAGCACAAGGTGTACGATCTCCGAGAGACGAAGCTCTACTGCTCCTCCAAGTGCGTGATCGATAGCAAGGCGTTTGCTCAGAGCTTGAGCGAGGAGAGGTGTGATATCTTGGATTTCGGAAAGGTCGAGAGGGTTTTGGGGCAATTTGGGGAAAAAGATGAACAAGGGAAGAAGGAGATTGGGGATTTGGGAATCTCTAAGTTGAAGATTGAAGAAAAGAGTGAGACTTATAGTGGGAAATTGGAGGACTGGGTTGGTCCTTCGAATGCCATTGAAGGATATGTTCCAAAAAAAGATAGGGTTTCGAAGCCTTTGGGTTCGAAAAAGAGCAAACAAGGGTCCAAAGGGAAAGATACGAAGCCGAGTGGTGGTGGGAAACAATTAATTTTGAATGATATGGACTTCATGAGTACACTATTAGCTTGTGATGAATATAGTGTGTCCAAAATGCCACCAACTGTAGCGGAGAATAGTGTTGATACTACGTTAAAGGAATCAAAAGGAAAAGTTGGTGGTAAAGATTCAGAGAGCGGATTTAGTGTGTTGGAAACCTCAGCTGCTCCTAATAAGAGTGAAGTGGGTGTGGTGGATGTTGGGGATTTAGGTATGTCTAGGTTGAAGATTGAAGAGAAAGATGAATCCTTTGTTGGTAAGGCAGAGAAATCGAGTGAGGCTAGACTGAGGTCTTCTCTTAAACATTCAGGGACAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGACGAAAAAATTGATAGTACCGGGAGGAGAAATCTTTGTGAGGTGAGAGACATGGAAGATGGAATTGAAAATCCTGCTGCATTTGGCAGCTTGCACAAAGCTTCTACATCAAATGAAGCTGGTTCCTCTTTTAATTGGGTTGATAAGACGATTGATAGTACTAAGAGTGAAAATATTTGTGAGGTTAGAGAAATGCAAGAGGCAAAAGATGTTCCTGAGGTAGGCAGTTCAGTCCTGCAAGATAATGAATGGTTTGAGTCGGCAGAAGCCTGTGCATCAGCATTGAGTCAGGCAGCCGGCGCTGTTGCAACTGGAGAATCTGATACTAATGATGCTGTGTCAAAAGCCGGGATTATTATATTGCCACGTCCAGATGGTGTGGATGAAGAAGAGTCCATAGTGGATGATGTGTATGAAGAAGATTCCATAGAGGATAGTGTGGATGAAGAAGAGTCTGCAGAGGATGTTGACATGCTTGAACCAGAACATGCTGTTTCAAAGTGGCCAAGAAAGCCCGAAAGTTCACAGTATGATTTATTTAACCCTGAGGATTCTTGGTTTGATGCTCCACCAGATGGTTTCAATTTAACTTTATCTCCTTTTGCAACAATGTGGAATGCACTCTTTACATGGATAACATCATCTACATTGGCTTATATATATGGAAAGGATGACAGTTCCCATGAAGAGTTTCTCTACGTCAATGGGAGAAGTTATCCCCATAAGATTGTGTTGGCAGATGGTCGGTCTTCAGAAATCAAGCTAACTGTGGGTGAATCTCTTTCTCGGGCTCTACCAGAAGTTGTTGCTGAACTAGGGCTACCAGTATCCAGTTTAGAGAAAGGAATGGGCTTCATGTTGAATACAATGTCCTTTATTGAGGCGCTACCAGCATTCAGAATGAAACAGTGGCAAGTGATTGCTCTTCTTTTCATTGAGGGCCTCTCTGTTTGTAGGATCCCGGCACTTACTTCTCGCATGACAAATAGAAGGGTACTGATTCAGAAGGTGCTGGATGGTGCCCGTATAAGTGTAGAAGAGTACGAGATTATGAAGGATTTCCTAATACCGCTTGGCCGAGCGCCTCAATTCTCATCCCAGAGTGGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

701

Amino Acids

77.08

Weight (kDa)

4.9

Isoelectric Point (pI)

49.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPAP2_Rtr1 PF04181 40 - 115 7e-23 Rtr1/RPAP2 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37640 AT2G37640 AT5G02260
fragaria_vesca FvH4_6g13610
malus_domestica MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica Prupe.6G256500_v2.0.a1
pyrus_communis pycom04g11810 pycom12g13760
rosa_chinensis RchiOBHm_Chr3g0466461
rosa_laevigata RLG00000024572
rosa_multiflora Rmu_sc0003332.1_g000023
rosa_rugosa Rorug03G0082100
rosa_samantha Rh3DG150700
rosa_wichuraiana Rw3G012170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 2012
AccB7I CCANNNNNTGG 1 cut(s) 1568
AccBSI CCGCTC 2 cut(s) 129, 786
AciI CCGC 6 cut(s) 127, 177, 226, 719, 786, 2063
AclWI GGATC 3 cut(s) 153, 1945, 1958
AcoI YGGCCR 2 cut(s) 1496, 2068
AcuI CTGAAG 1 cut(s) 1728
AcyI GRCGYC 2 cut(s) 81, 144
AdeI CACNNNGTG 1 cut(s) 265
AfaI GTAC 7 cut(s) 53, 269, 667, 1012, 1153, 1989, 2036
AfiI CCNNNNNNNGG 3 cut(s) 623, 1214, 1568
AjiI CACGTC 1 cut(s) 1361
AjuI GAANNNNNNNTTGG 2 cut(s) 885, 917
Alw21I GWGCWC 1 cut(s) 261
Alw26I GTCTC 3 cut(s) 275, 473, 1035
AlwI GGATC 3 cut(s) 153, 1945, 1958
Ama87I CYCGRG 1 cut(s) 1779
AoxI GGCC 3 cut(s) 1496, 1933, 2068
ApeKI GCWGC 6 cut(s) 58, 61, 812, 1070, 1080, 1286
AseI ATTAAT 1 cut(s) 638
Asp700I GAANNNNTTC 2 cut(s) 1683, 2051
AspLEI GCGC 3 cut(s) 1295, 1879, 2077
AspS9I GGNCC 3 cut(s) 512, 594, 1933
AsuC2I CCSGG 3 cut(s) 1015, 1342, 1955
AsuHPI GGTGA 2 cut(s) 1048, 1778
AsuII TTCGAA 3 cut(s) 518, 560, 575
AvaI CYCGRG 1 cut(s) 1779
AvaII GGWCC 2 cut(s) 512, 594
AxyI CCTNAGG 2 cut(s) 1209, 1539
BaeGI GKGCMC 1 cut(s) 2017
BalI TGGCCA 1 cut(s) 1498
BamHI GGATCC 1 cut(s) 1950
BanI GGYRCC 1 cut(s) 2012
BanII GRGCYC 1 cut(s) 1786
BbsI GAAGAC 2 cut(s) 933, 1734
Bbv12I GWGCWC 1 cut(s) 261
BbvCI CCTCAGC 1 cut(s) 808
BbvI GCAGC 6 cut(s) 45, 73, 799, 1057, 1092, 1298
BccI CCATC 7 cut(s) 34, 170, 1046, 1361, 1562, 1727, 2003
BceAI ACGGC 1 cut(s) 94
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciVI GTATCC 1 cut(s) 1831
BcnI CCSGG 3 cut(s) 1015, 1342, 1955
BcoDI GTCTC 3 cut(s) 275, 473, 1035
BfaI CTAG 4 cut(s) 92, 867, 930, 1808
BfmI CTRYAG 3 cut(s) 59, 714, 1449
BfoI RGCGCY 3 cut(s) 1296, 1880, 2078
BfuI GTATCC 1 cut(s) 1831
BisI GCNGC 7 cut(s) 59, 62, 178, 813, 1071, 1081, 1287
BlsI GCNGC 7 cut(s) 60, 63, 179, 814, 1072, 1082, 1288
BmcAI AGTACT 1 cut(s) 1153
Bme1390I CCNGG 3 cut(s) 1015, 1342, 1955
Bme18I GGWCC 2 cut(s) 512, 594
BmeT110I CYCGRG 1 cut(s) 1779
BmgBI CACGTC 1 cut(s) 1361
BmgT120I GGNCC 3 cut(s) 512, 594, 1933
BmiI GGNNCC 5 cut(s) 115, 595, 1117, 1952, 2014
BmrFI CCNGG 3 cut(s) 1015, 1342, 1955
BmrI ACTGGG 1 cut(s) 514
BmsI GCATC 4 cut(s) 25, 1277, 1315, 1546
BmuI ACTGGG 1 cut(s) 514
BoxI GACNNNNGTC 1 cut(s) 937
BpiI GAAGAC 2 cut(s) 933, 1734
BplI GAGNNNNNCTC 4 cut(s) 928, 960, 1922, 1954
BpmI CTGGAG 1 cut(s) 1326
Bpu10I CCTNAGC 1 cut(s) 808
Bpu14I TTCGAA 3 cut(s) 518, 560, 575
BpuEI CTTGAG 2 cut(s) 236, 361
BpuMI CCSGG 3 cut(s) 1015, 1342, 1955
Bsa29I ATCGAT 1 cut(s) 315
BsaHI GRCGYC 2 cut(s) 81, 144
BsaXI ACNNNNNCTCC 4 cut(s) 284, 314, 1573, 1603
Bsc4I CCNNNNNNNGG 3 cut(s) 623, 1214, 1568
Bse118I RCCGGY 2 cut(s) 110, 1289
Bse1I ACTGG 4 cut(s) 509, 1309, 1817, 1824
Bse21I CCTNAGG 2 cut(s) 1209, 1539
BseCI ATCGAT 1 cut(s) 315
BseGI GGATG 8 cut(s) 850, 1381, 1402, 1441, 1462, 1669, 2014, 2087
BseLI CCNNNNNNNGG 3 cut(s) 623, 1214, 1568
BseMII CTCAG 5 cut(s) 347, 822, 926, 1200, 1530
BseNI ACTGG 4 cut(s) 509, 1309, 1817, 1824
BseRI GAGGAG 4 cut(s) 62, 289, 362, 1033
BseSI GKGCMC 1 cut(s) 2017
BseXI GCAGC 6 cut(s) 45, 73, 799, 1057, 1092, 1298
BshFI GGCC 3 cut(s) 1498, 1935, 2070
BshNI GGYRCC 1 cut(s) 2012
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 261
BsiHKCI CYCGRG 1 cut(s) 1779
BsiSI CCGG 5 cut(s) 111, 1014, 1290, 1341, 1955
BslFI GGGAC 1 cut(s) 973
BslI CCNNNNNNNGG 3 cut(s) 623, 1214, 1568
BsmAI GTCTC 3 cut(s) 275, 473, 1035
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 973
BsmI GAATGC 3 cut(s) 526, 1615, 1886
BsnI GGCC 3 cut(s) 1498, 1935, 2070
BsoBI CYCGRG 1 cut(s) 1779
Bsp119I TTCGAA 3 cut(s) 518, 560, 575
Bsp1286I GDGCHC 3 cut(s) 261, 1786, 2017
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 4 cut(s) 158, 271, 312, 1950
BspACI CCGC 6 cut(s) 127, 177, 226, 719, 786, 2063
BspANI GGCC 3 cut(s) 1498, 1935, 2070
BspCNI CTCAG 5 cut(s) 346, 821, 927, 1201, 1531
BspDI ATCGAT 1 cut(s) 315
BspHI TCATGA 1 cut(s) 660
BspLI GGNNCC 5 cut(s) 115, 595, 1117, 1952, 2014
BspMAI CTGCAG 2 cut(s) 63, 1453
BspPI GGATC 3 cut(s) 153, 1945, 1958
BspQI GCTCTTC 1 cut(s) 1923
BspT104I TTCGAA 3 cut(s) 518, 560, 575
BspT107I GGYRCC 1 cut(s) 2012
BsrBI CCGCTC 2 cut(s) 129, 786
BsrFI RCCGGY 2 cut(s) 110, 1289
BsrGI TGTACA 1 cut(s) 51
BsrI ACTGG 4 cut(s) 509, 1309, 1817, 1824
BssAI RCCGGY 2 cut(s) 110, 1289
BssMI GATC 4 cut(s) 158, 271, 312, 1950
BssNI GRCGYC 2 cut(s) 81, 144
Bst4CI ACNGT 5 cut(s) 715, 1521, 1670, 1762, 1902
Bst6I CTCTTC 6 cut(s) 876, 1377, 1437, 1674, 1923, 2025
BstACI GRCGYC 2 cut(s) 81, 144
BstAUI TGTACA 1 cut(s) 51
BstBI TTCGAA 3 cut(s) 518, 560, 575
BstC8I GCNNGC 4 cut(s) 66, 112, 1085, 1291
BstDEI CTNAG 9 cut(s) 106, 333, 453, 808, 935, 971, 1155, 1209, 1539
BstENI CCTNNNNNAGG 1 cut(s) 1212
BstF5I GGATG 8 cut(s) 850, 1381, 1402, 1441, 1462, 1669, 2014, 2087
BstH2I RGCGCY 3 cut(s) 1296, 1880, 2078
BstHHI GCGC 3 cut(s) 1295, 1879, 2077
BstKTI GATC 4 cut(s) 161, 274, 315, 1953
BstMAI GTCTC 3 cut(s) 275, 473, 1035
BstMBI GATC 4 cut(s) 158, 271, 312, 1950
BstMWI GCNNNNNNNGC 4 cut(s) 256, 1292, 1504, 1883
BstNSI RCATGY 2 cut(s) 1468, 1484
BstPAI GACNNNNGTC 1 cut(s) 937
BstSCI CCNGG 3 cut(s) 1013, 1340, 1953
BstSFI CTRYAG 3 cut(s) 59, 714, 1449
BstSLI GKGCMC 1 cut(s) 2017
BstV1I GCAGC 6 cut(s) 45, 73, 799, 1057, 1092, 1298
BstV2I GAAGAC 2 cut(s) 933, 1734
BstX2I RGATCY 1 cut(s) 1950
BstYI RGATCY 1 cut(s) 1950
Bsu15I ATCGAT 1 cut(s) 315
Bsu36I CCTNAGG 2 cut(s) 1209, 1539
BsuI GTATCC 1 cut(s) 1831
BsuRI GGCC 3 cut(s) 1498, 1935, 2070
BsuTUI ATCGAT 1 cut(s) 315
BtgZI GCGATG 1 cut(s) 148
BtrI CACGTC 1 cut(s) 1361
BtsCI GGATG 8 cut(s) 850, 1381, 1402, 1441, 1462, 1669, 2014, 2087
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 3 cut(s) 42, 54, 1907
Cac8I GCNNGC 4 cut(s) 66, 112, 1085, 1291
CciI TCATGA 1 cut(s) 660
CfoI GCGC 3 cut(s) 1295, 1879, 2077
Cfr10I RCCGGY 2 cut(s) 110, 1289
Cfr13I GGNCC 3 cut(s) 512, 594, 1933
ClaI ATCGAT 1 cut(s) 315
CseI GACGC 2 cut(s) 53, 70
Csp6I GTAC 7 cut(s) 52, 268, 666, 1011, 1152, 1988, 2035
CviAII CATG 8 cut(s) 661, 1045, 1465, 1481, 1623, 1676, 1849, 1972
CviQI GTAC 7 cut(s) 52, 268, 666, 1011, 1152, 1988, 2035
DdeI CTNAG 9 cut(s) 106, 333, 453, 808, 935, 971, 1155, 1209, 1539
DpnI GATC 4 cut(s) 160, 273, 314, 1952
DpnII GATC 4 cut(s) 158, 271, 312, 1950
DraIII CACNNNGTG 1 cut(s) 265
EaeI YGGCCR 2 cut(s) 1496, 2068
Eam1104I CTCTTC 6 cut(s) 876, 1377, 1437, 1674, 1923, 2025
EarI CTCTTC 6 cut(s) 876, 1377, 1437, 1674, 1923, 2025
Eco24I GRGCYC 1 cut(s) 1786
Eco32I GATATC 1 cut(s) 361
Eco47I GGWCC 2 cut(s) 512, 594
Eco57I CTGAAG 1 cut(s) 1728
Eco81I CCTNAGG 2 cut(s) 1209, 1539
Eco88I CYCGRG 1 cut(s) 1779
EcoNI CCTNNNNNAGG 1 cut(s) 1212
EcoO109I RGGNCCY 1 cut(s) 1933
EcoRV GATATC 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 1786
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 8 cut(s) 664, 1048, 1468, 1484, 1626, 1679, 1852, 1975
FaqI GGGAC 1 cut(s) 973
FatI CATG 8 cut(s) 660, 1044, 1464, 1480, 1622, 1675, 1848, 1971
FauI CCCGC 2 cut(s) 134, 233
Fnu4HI GCNGC 7 cut(s) 59, 62, 178, 813, 1071, 1081, 1287
FokI GGATG 8 cut(s) 857, 1388, 1409, 1448, 1469, 1676, 2021, 2074
FriOI GRGCYC 1 cut(s) 1786
Fsp4HI GCNGC 7 cut(s) 59, 62, 178, 813, 1071, 1081, 1287
FspBI CTAG 4 cut(s) 92, 867, 930, 1808
GlaI GCGC 3 cut(s) 1294, 1878, 2076
GluI GCNGC 7 cut(s) 59, 62, 178, 813, 1071, 1081, 1287
GsuI CTGGAG 1 cut(s) 1326
HaeII RGCGCY 3 cut(s) 1296, 1880, 2078
HaeIII GGCC 3 cut(s) 1498, 1935, 2070
HapII CCGG 5 cut(s) 111, 1014, 1290, 1341, 1955
HgaI GACGC 2 cut(s) 53, 70
HhaI GCGC 3 cut(s) 1295, 1879, 2077
Hin1I GRCGYC 2 cut(s) 81, 144
Hin1II CATG 8 cut(s) 664, 1048, 1468, 1484, 1626, 1679, 1852, 1975
Hin6I GCGC 3 cut(s) 1293, 1877, 2075
HinP1I GCGC 3 cut(s) 1293, 1877, 2075
HincII GTYRAC 1 cut(s) 1462
HindII GTYRAC 1 cut(s) 1462
HindIII AAGCTT 2 cut(s) 213, 1092
HpaII CCGG 5 cut(s) 111, 1014, 1290, 1341, 1955
HphI GGTGA 2 cut(s) 1048, 1778
Hpy166II GTNNAC 6 cut(s) 40, 52, 268, 668, 1462, 1517
Hpy188III TCNNGA 4 cut(s) 382, 661, 1208, 1364
Hpy8I GTNNAC 6 cut(s) 40, 52, 268, 668, 1462, 1517
Hpy99I CGWCG 4 cut(s) 47, 80, 146, 149
HpyAV CCTTC 7 cut(s) 216, 421, 524, 525, 1977, 1993, 2041
HpyCH4III ACNGT 5 cut(s) 715, 1521, 1670, 1762, 1902
HpyCH4IV ACGT 4 cut(s) 144, 740, 1360, 1692
HpyF10VI GCNNNNNNNGC 4 cut(s) 256, 1292, 1504, 1883
HpyF3I CTNAG 9 cut(s) 106, 333, 453, 808, 935, 971, 1155, 1209, 1539
HpySE526I ACGT 4 cut(s) 144, 740, 1360, 1692
Hsp92I GRCGYC 2 cut(s) 81, 144
Hsp92II CATG 8 cut(s) 664, 1048, 1468, 1484, 1626, 1679, 1852, 1975
HspAI GCGC 3 cut(s) 1293, 1877, 2075
KroI GCCGGC 2 cut(s) 110, 1289
KroNI GCCGGC 2 cut(s) 112, 1291
Kzo9I GATC 4 cut(s) 158, 271, 312, 1950
LguI GCTCTTC 1 cut(s) 1923
LmnI GCTCC 8 cut(s) 119, 134, 154, 197, 256, 302, 820, 1564
Lsp1109I GCAGC 6 cut(s) 45, 73, 799, 1057, 1092, 1298
LweI GCATC 4 cut(s) 25, 1277, 1315, 1546
MaeI CTAG 4 cut(s) 92, 867, 930, 1808
MaeII ACGT 4 cut(s) 144, 740, 1360, 1692
MaeIII GTNAC 3 cut(s) 148, 233, 982
MalI GATC 4 cut(s) 160, 273, 314, 1952
MbiI CCGCTC 2 cut(s) 129, 786
MboI GATC 4 cut(s) 158, 271, 312, 1950
MflI RGATCY 1 cut(s) 1950
MhlI GDGCHC 3 cut(s) 261, 1786, 2017
MlsI TGGCCA 1 cut(s) 1498
MluCI AATT 9 cut(s) 398, 494, 635, 639, 1002, 1056, 1126, 1576, 2081
MluNI TGGCCA 1 cut(s) 1498
MlyI GAGTC 4 cut(s) 1259, 1288, 1394, 1454
MmeI TCCRAC 2 cut(s) 156, 780
Mox20I TGGCCA 1 cut(s) 1498
MroNI GCCGGC 2 cut(s) 110, 1289
MroXI GAANNNNTTC 2 cut(s) 1683, 2051
MscI TGGCCA 1 cut(s) 1498
MseI TTAA 7 cut(s) 638, 743, 948, 1125, 1533, 1580, 2104
Msp20I TGGCCA 1 cut(s) 1498
MspA1I CMGCKG 2 cut(s) 64, 812
MspI CCGG 5 cut(s) 111, 1014, 1290, 1341, 1955
MspR9I CCNGG 3 cut(s) 1015, 1342, 1955
Mva1269I GAATGC 3 cut(s) 526, 1615, 1886
MwoI GCNNNNNNNGC 4 cut(s) 256, 1292, 1504, 1883
NaeI GCCGGC 2 cut(s) 112, 1291
NciI CCSGG 3 cut(s) 1015, 1342, 1955
NdeII GATC 4 cut(s) 158, 271, 312, 1950
NgoMIV GCCGGC 2 cut(s) 110, 1289
NlaIII CATG 8 cut(s) 664, 1048, 1468, 1484, 1626, 1679, 1852, 1975
NlaIV GGNNCC 5 cut(s) 115, 595, 1117, 1952, 2014
NmeAIII GCCGAG 2 cut(s) 642, 2096
NmuCI GTSAC 1 cut(s) 233
NspI RCATGY 2 cut(s) 1468, 1484
NspV TTCGAA 3 cut(s) 518, 560, 575
PagI TCATGA 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 1923
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PctI GAATGC 3 cut(s) 526, 1615, 1886
PdiI GCCGGC 2 cut(s) 112, 1291
PdmI GAANNNNTTC 2 cut(s) 1683, 2051
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 1568
PkrI GCNGC 7 cut(s) 60, 63, 179, 814, 1072, 1082, 1288
PleI GAGTC 4 cut(s) 1258, 1287, 1393, 1453
PpsI GAGTC 4 cut(s) 1258, 1287, 1393, 1453
PshAI GACNNNNGTC 1 cut(s) 937
PshBI ATTAAT 1 cut(s) 638
PspN4I GGNNCC 5 cut(s) 115, 595, 1117, 1952, 2014
PspPI GGNCC 3 cut(s) 512, 594, 1933
PsrI GAACNNNNNNTAC 2 cut(s) 1797, 1829
PstI CTGCAG 2 cut(s) 63, 1453
PsuI RGATCY 1 cut(s) 1950
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 2 cut(s) 64, 812
RsaI GTAC 7 cut(s) 53, 269, 667, 1012, 1153, 1989, 2036
RsaNI GTAC 7 cut(s) 52, 268, 666, 1011, 1152, 1988, 2035
SapI GCTCTTC 1 cut(s) 1923
SaqAI TTAA 7 cut(s) 638, 743, 948, 1125, 1533, 1580, 2104
SatI GCNGC 7 cut(s) 59, 62, 178, 813, 1071, 1081, 1287
Sau3AI GATC 4 cut(s) 158, 271, 312, 1950
Sau96I GGNCC 3 cut(s) 512, 594, 1933
ScaI AGTACT 1 cut(s) 1153
SchI GAGTC 4 cut(s) 1259, 1288, 1394, 1454
ScrFI CCNGG 3 cut(s) 1015, 1342, 1955
SduI GDGCHC 3 cut(s) 261, 1786, 2017
SfaNI GCATC 4 cut(s) 25, 1277, 1315, 1546
SfcI CTRYAG 3 cut(s) 59, 714, 1449
SfuI TTCGAA 3 cut(s) 518, 560, 575
SinI GGWCC 2 cut(s) 512, 594
SmlI CTYRAG 2 cut(s) 251, 340
SmoI CTYRAG 2 cut(s) 251, 340
Sse9I AATT 9 cut(s) 398, 494, 635, 639, 1002, 1056, 1126, 1576, 2081
SsiI CCGC 6 cut(s) 127, 177, 226, 719, 786, 2063
SspI AATATT 1 cut(s) 1168
SspMI CTAG 4 cut(s) 92, 867, 930, 1808
StyD4I CCNGG 3 cut(s) 1013, 1340, 1953
TaaI ACNGT 5 cut(s) 715, 1521, 1670, 1762, 1902
TaiI ACGT 4 cut(s) 147, 743, 1363, 1695
TaqI TCGA 8 cut(s) 29, 75, 315, 381, 518, 560, 575, 920
TaqII GACCGA 1 cut(s) 1728
TasI AATT 9 cut(s) 398, 494, 635, 639, 1002, 1056, 1126, 1576, 2081
TatI WGTACW 3 cut(s) 51, 665, 1151
TauI GCSGC 1 cut(s) 180
Tru1I TTAA 7 cut(s) 638, 743, 948, 1125, 1533, 1580, 2104
Tru9I TTAA 7 cut(s) 638, 743, 948, 1125, 1533, 1580, 2104
TscAI CASTG 3 cut(s) 42, 54, 1907
TseFI GTSAC 1 cut(s) 233
TseI GCWGC 6 cut(s) 58, 61, 812, 1070, 1080, 1286
Tsp45I GTSAC 1 cut(s) 233
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 3 cut(s) 42, 54, 1907
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 1568
VpaK11BI GGWCC 2 cut(s) 512, 594
VspI ATTAAT 1 cut(s) 638
XagI CCTNNNNNAGG 1 cut(s) 1212
XceI RCATGY 2 cut(s) 1468, 1484
XmnI GAANNNNTTC 2 cut(s) 1683, 2051
XspI CTAG 4 cut(s) 92, 867, 930, 1808
ZraI GACGTC 1 cut(s) 145
ZrmI AGTACT 1 cut(s) 1153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.