Rmu_sc0003332.1_g000023

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003332.1
OG0015821
Physical Location & Seq
Reverse (-)
99819 .. 101337
1519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003332.1_g000023.1.cds

Sequence Viewer

Length: 777 bp
atggctttccttcatcttctctgcattgcttcactcgcctctctcctcatcctggctaatgccagaatcccagggccttacaccggtggcccctggcaggacgctcacgccaccttctacggcggcagcgacgcctctggaaccatgggaggcgcatgtgggtacggaaacctctacagccagggctacggagtcaacactgctgcactgagcactgctctgttcaacaatggcctcagctgcggtgcttgctttgagatcaggtgcggcgacgaccccaggtggtgcacccccggaaagccctccatcttcgtcaccgccaccaacttctgccctcccaacttcgctcagcccagcgacaatggcggttggtgcaaccctcccaggacccacttcgacctcgccatgcccatgttcctcaagatcgccgagtacaaagccggaatcgtccccgtctcttaccgccgggtcccatgcagaaagaggggagggatcaggttcaccatcaacggccacaagtacttcaacctggttctgatcaccaacgtcgcgggcgcaggggatatcgtgagcgtgagcgtgaagggcacgaacaccgggtggatgccgatgagccggaactgggggcaaaactggcaatccaattccgtcctggtgggccaggcactgtccttcagagtcagaggcagcgacaggcgaagctcgacgacctacaacgtggcaccagctaattggcagttcgggcagacctattccggaaagaatttccgtgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

258

Amino Acids

27.86

Weight (kDa)

9.5

Isoelectric Point (pI)

32.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37640 AT2G37640 AT5G02260
fragaria_vesca FvH4_6g13610
malus_domestica MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica Prupe.6G256500_v2.0.a1
pyrus_communis pycom04g11810 pycom12g13760
rosa_chinensis RchiOBHm_Chr3g0466461
rosa_laevigata RLG00000024572
rosa_multiflora Rmu_sc0003332.1_g000023
rosa_rugosa Rorug03G0082100
rosa_samantha Rh3DG150700
rosa_wichuraiana Rw3G012170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 721
AccII CGCG 1 cut(s) 551
AccIII TCCGGA 1 cut(s) 755
AciI CCGC 7 cut(s) 123, 243, 267, 318, 366, 463, 551
AclWI GGATC 1 cut(s) 500
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 1 cut(s) 763
AcuI CTGAAG 1 cut(s) 658
AcyI GRCGYC 1 cut(s) 132
AdeI CACNNNGTG 1 cut(s) 600
AfaI GTAC 3 cut(s) 164, 434, 521
AfiI CCNNNNNNNGG 4 cut(s) 52, 83, 97, 622
AgeI ACCGGT 1 cut(s) 83
AgsI TTSAA 2 cut(s) 226, 526
AjnI CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 528, 651, 660
AluBI AGCT 3 cut(s) 240, 702, 728
AluI AGCT 3 cut(s) 240, 702, 728
Alw21I GWGCWC 2 cut(s) 215, 290
Alw26I GTCTC 1 cut(s) 460
Alw44I GTGCAC 1 cut(s) 286
AlwI GGATC 1 cut(s) 500
AlwNI CAGNNNCTG 1 cut(s) 667
Aor13HI TCCGGA 1 cut(s) 755
AoxI GGCC 5 cut(s) 74, 88, 232, 511, 658
ApaLI GTGCAC 1 cut(s) 286
ApeKI GCWGC 4 cut(s) 126, 203, 240, 687
ApoI RAATTY 1 cut(s) 763
AsiGI ACCGGT 1 cut(s) 83
AspLEI GCGC 2 cut(s) 155, 557
AspS9I GGNCC 5 cut(s) 74, 89, 387, 469, 658
AsuC2I CCSGG 3 cut(s) 294, 467, 598
AsuHPI GGTGA 3 cut(s) 307, 493, 532
AvaII GGWCC 2 cut(s) 387, 469
BaeGI GKGCMC 2 cut(s) 290, 590
BanI GGYRCC 1 cut(s) 721
Bbv12I GWGCWC 2 cut(s) 215, 290
BbvCI CCTCAGC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 138, 190, 227, 699
BccI CCATC 2 cut(s) 314, 512
BceAI ACGGC 2 cut(s) 136, 526
BciT130I CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 530, 653, 662
BclI TGATCA 1 cut(s) 537
BcnI CCSGG 3 cut(s) 294, 467, 598
BcoDI GTCTC 1 cut(s) 460
BfmI CTRYAG 1 cut(s) 175
BisI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 688
BlpI GCTNAGC 1 cut(s) 348
BlsI GCNGC 6 cut(s) 125, 128, 205, 242, 269, 689
BmcAI AGTACT 1 cut(s) 521
Bme18I GGWCC 2 cut(s) 387, 469
BmgT120I GGNCC 5 cut(s) 74, 89, 387, 469, 658
BmiI GGNNCC 6 cut(s) 91, 142, 389, 470, 471, 723
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 1 cut(s) 594
BmuI ACTGGG 1 cut(s) 631
BplI GAGNNNNNCTC 2 cut(s) 202, 234
Bpu10I CCTNAGC 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 3 cut(s) 294, 467, 598
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 8 cut(s) 70, 71, 92, 144, 181, 278, 292, 383
BsaWI WCCGGW 2 cut(s) 83, 755
Bsc4I CCNNNNNNNGG 4 cut(s) 52, 83, 97, 622
Bse118I RCCGGY 1 cut(s) 83
Bse1I ACTGG 2 cut(s) 626, 638
Bse3DI GCAATG 1 cut(s) 24
BseAI TCCGGA 1 cut(s) 755
BseBI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 530, 653, 662
BseDI CCNNGG 8 cut(s) 70, 71, 92, 144, 181, 278, 292, 383
BseGI GGATG 2 cut(s) 48, 609
BseLI CCNNNNNNNGG 4 cut(s) 52, 83, 97, 622
BseMI GCAATG 1 cut(s) 24
BseMII CTCAG 3 cut(s) 200, 250, 362
BseNI ACTGG 2 cut(s) 626, 638
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 2 cut(s) 290, 590
BseXI GCAGC 4 cut(s) 138, 190, 227, 699
BseYI CCCAGC 1 cut(s) 353
BsgI GTGCAG 1 cut(s) 189
Bsh1236I CGCG 1 cut(s) 551
BshFI GGCC 5 cut(s) 76, 90, 234, 513, 660
BshNI GGYRCC 1 cut(s) 721
BshTI ACCGGT 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 215, 290
BsiSI CCGG 7 cut(s) 84, 294, 441, 466, 597, 616, 756
BslFI GGGAC 2 cut(s) 434, 455
BslI CCNNNNNNNGG 4 cut(s) 52, 83, 97, 622
BsmAI GTCTC 1 cut(s) 460
BsmBI CGTCTC 1 cut(s) 460
BsmFI GGGAC 2 cut(s) 434, 455
BsnI GGCC 5 cut(s) 76, 90, 234, 513, 660
Bsp1286I GDGCHC 3 cut(s) 215, 290, 590
Bsp13I TCCGGA 1 cut(s) 755
Bsp143I GATC 4 cut(s) 258, 423, 492, 537
Bsp1720I GCTNAGC 1 cut(s) 348
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 7 cut(s) 123, 243, 267, 318, 366, 463, 551
BspANI GGCC 5 cut(s) 76, 90, 234, 513, 660
BspCNI CTCAG 3 cut(s) 201, 249, 361
BspEI TCCGGA 1 cut(s) 755
BspFNI CGCG 1 cut(s) 551
BspLI GGNNCC 6 cut(s) 91, 142, 389, 470, 471, 723
BspPI GGATC 1 cut(s) 500
BspT107I GGYRCC 1 cut(s) 721
BsrDI GCAATG 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 83
BsrI ACTGG 2 cut(s) 626, 638
BssAI RCCGGY 1 cut(s) 83
BssECI CCNNGG 8 cut(s) 70, 71, 92, 144, 181, 278, 292, 383
BssMI GATC 4 cut(s) 258, 423, 492, 537
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 144
Bst2UI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 530, 653, 662
Bst4CI ACNGT 1 cut(s) 669
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 2 cut(s) 250, 553
BstDEI CTNAG 3 cut(s) 209, 236, 348
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 2 cut(s) 48, 609
BstFNI CGCG 1 cut(s) 551
BstHHI GCGC 2 cut(s) 155, 557
BstKTI GATC 4 cut(s) 261, 426, 495, 540
BstMAI GTCTC 1 cut(s) 460
BstMBI GATC 4 cut(s) 258, 423, 492, 537
BstMWI GCNNNNNNNGC 8 cut(s) 35, 240, 249, 363, 372, 585, 634, 742
BstNI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 530, 653, 662
BstNSI RCATGY 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 175
BstSLI GKGCMC 2 cut(s) 290, 590
BstUI CGCG 1 cut(s) 551
BstV1I GCAGC 4 cut(s) 138, 190, 227, 699
BstXI CCANNNNNNTGG 1 cut(s) 732
BsuRI GGCC 5 cut(s) 76, 90, 234, 513, 660
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 48, 609
BtsI GCAGTG 2 cut(s) 198, 213
BtsIMutI CAGTG 4 cut(s) 198, 206, 213, 665
Cac8I GCNNGC 2 cut(s) 250, 553
CaiI CAGNNNCTG 1 cut(s) 667
CfoI GCGC 2 cut(s) 155, 557
Cfr10I RCCGGY 1 cut(s) 83
Cfr13I GGNCC 5 cut(s) 74, 89, 387, 469, 658
CseI GACGC 2 cut(s) 110, 140
CsiI ACCWGGT 1 cut(s) 528
Csp6I GTAC 3 cut(s) 163, 433, 520
CspAI ACCGGT 1 cut(s) 83
CviAII CATG 5 cut(s) 145, 156, 406, 412, 474
CviQI GTAC 3 cut(s) 163, 433, 520
DdeI CTNAG 3 cut(s) 209, 236, 348
DpnI GATC 4 cut(s) 260, 425, 494, 539
DpnII GATC 4 cut(s) 258, 423, 492, 537
DraIII CACNNNGTG 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 511
Eco130I CCWWGG 1 cut(s) 144
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 387, 469
Eco57I CTGAAG 1 cut(s) 658
EcoO109I RGGNCCY 3 cut(s) 74, 387, 469
EcoRII CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 528, 651, 660
EcoRV GATATC 1 cut(s) 565
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 460
FaeI CATG 5 cut(s) 148, 159, 409, 415, 477
FaiI YATR 5 cut(s) 146, 157, 407, 413, 475
FaqI GGGAC 2 cut(s) 434, 455
FatI CATG 5 cut(s) 144, 155, 405, 411, 473
FauI CCCGC 1 cut(s) 544
FbaI TGATCA 1 cut(s) 537
Fnu4HI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 688
FokI GGATG 2 cut(s) 35, 616
Fsp4HI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 688
GlaI GCGC 2 cut(s) 154, 556
GluI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 688
GsaI CCCAGC 1 cut(s) 357
HaeIII GGCC 5 cut(s) 76, 90, 234, 513, 660
HapII CCGG 7 cut(s) 84, 294, 441, 466, 597, 616, 756
HgaI GACGC 2 cut(s) 110, 140
HhaI GCGC 2 cut(s) 155, 557
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 5 cut(s) 148, 159, 409, 415, 477
Hin6I GCGC 2 cut(s) 153, 555
HinP1I GCGC 2 cut(s) 153, 555
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 4 cut(s) 66, 192, 444, 678
HpaII CCGG 7 cut(s) 84, 294, 441, 466, 597, 616, 756
HphI GGTGA 3 cut(s) 307, 493, 532
Hpy166II GTNNAC 3 cut(s) 196, 288, 501
Hpy188I TCNGA 3 cut(s) 537, 677, 683
Hpy188III TCNNGA 4 cut(s) 138, 421, 568, 756
Hpy8I GTNNAC 3 cut(s) 196, 288, 501
Hpy99I CGWCG 4 cut(s) 134, 275, 551, 709
HpyAV CCTTC 4 cut(s) 20, 124, 577, 682
HpyCH4III ACNGT 1 cut(s) 669
HpyCH4IV ACGT 2 cut(s) 546, 717
HpyCH4V TGCA 5 cut(s) 24, 206, 288, 375, 477
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 240, 249, 363, 372, 585, 634, 742
HpyF3I CTNAG 3 cut(s) 209, 236, 348
HpySE526I ACGT 2 cut(s) 546, 717
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 5 cut(s) 148, 159, 409, 415, 477
HspAI GCGC 2 cut(s) 153, 555
KflI GGGWCCC 1 cut(s) 469
Kpn2I TCCGGA 1 cut(s) 755
Ksp22I TGATCA 1 cut(s) 537
Kzo9I GATC 4 cut(s) 258, 423, 492, 537
Lsp1109I GCAGC 4 cut(s) 138, 190, 227, 699
LweI GCATC 1 cut(s) 594
MabI ACCWGGT 1 cut(s) 528
MaeII ACGT 2 cut(s) 546, 717
MaeIII GTNAC 1 cut(s) 313
MalI GATC 4 cut(s) 260, 425, 494, 539
MboI GATC 4 cut(s) 258, 423, 492, 537
MboII GAAGA 2 cut(s) 8, 301
MhlI GDGCHC 3 cut(s) 215, 290, 590
MluCI AATT 3 cut(s) 643, 730, 763
MlyI GAGTC 2 cut(s) 201, 687
MroI TCCGGA 1 cut(s) 755
MslI CAYNNNNRTG 1 cut(s) 410
MspA1I CMGCKG 1 cut(s) 240
MspI CCGG 7 cut(s) 84, 294, 441, 466, 597, 616, 756
MvaI CCWGG 9 cut(s) 53, 72, 94, 182, 280, 385, 530, 653, 662
MvnI CGCG 1 cut(s) 551
MwoI GCNNNNNNNGC 8 cut(s) 35, 240, 249, 363, 372, 585, 634, 742
NciI CCSGG 3 cut(s) 294, 467, 598
NcoI CCATGG 1 cut(s) 144
NdeII GATC 4 cut(s) 258, 423, 492, 537
NlaIII CATG 5 cut(s) 148, 159, 409, 415, 477
NlaIV GGNNCC 6 cut(s) 91, 142, 389, 470, 471, 723
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 313
NspI RCATGY 1 cut(s) 159
PasI CCCWGGG 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PfeI GAWTC 2 cut(s) 66, 444
PinAI ACCGGT 1 cut(s) 83
PkrI GCNGC 6 cut(s) 125, 128, 205, 242, 269, 689
PleI GAGTC 2 cut(s) 200, 686
PpsI GAGTC 2 cut(s) 200, 686
PpuMI RGGWCCY 2 cut(s) 387, 469
Psp5II RGGWCCY 2 cut(s) 387, 469
Psp6I CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 528, 651, 660
PspFI CCCAGC 1 cut(s) 353
PspGI CCWGG 9 cut(s) 51, 70, 92, 180, 278, 383, 528, 651, 660
PspN4I GGNNCC 6 cut(s) 91, 142, 389, 470, 471, 723
PspPI GGNCC 5 cut(s) 74, 89, 387, 469, 658
PspPPI RGGWCCY 2 cut(s) 387, 469
PstNI CAGNNNCTG 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 240
RsaI GTAC 3 cut(s) 164, 434, 521
RsaNI GTAC 3 cut(s) 163, 433, 520
RseI CAYNNNNRTG 1 cut(s) 410
SatI GCNGC 6 cut(s) 124, 127, 204, 241, 268, 688
Sau3AI GATC 4 cut(s) 258, 423, 492, 537
Sau96I GGNCC 5 cut(s) 74, 89, 387, 469, 658
ScaI AGTACT 1 cut(s) 521
SchI GAGTC 2 cut(s) 201, 687
SduI GDGCHC 3 cut(s) 215, 290, 590
SexAI ACCWGGT 1 cut(s) 528
SfaNI GCATC 1 cut(s) 594
SfcI CTRYAG 1 cut(s) 175
SgrAI CRCCGGYG 1 cut(s) 83
SinI GGWCC 2 cut(s) 387, 469
SmiMI CAYNNNNRTG 1 cut(s) 410
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 3 cut(s) 643, 730, 763
SsiI CCGC 7 cut(s) 123, 243, 267, 318, 366, 463, 551
StyI CCWWGG 1 cut(s) 144
TaaI ACNGT 1 cut(s) 669
TaiI ACGT 2 cut(s) 549, 720
TaqI TCGA 2 cut(s) 396, 704
TasI AATT 3 cut(s) 643, 730, 763
TatI WGTACW 2 cut(s) 432, 519
TauI GCSGC 2 cut(s) 126, 270
TfiI GAWTC 2 cut(s) 66, 444
TscAI CASTG 4 cut(s) 205, 213, 220, 672
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 126, 203, 240, 687
Tsp45I GTSAC 1 cut(s) 313
TspGWI ACGGA 4 cut(s) 180, 204, 637, 758
TspRI CASTG 4 cut(s) 205, 213, 220, 672
VneI GTGCAC 1 cut(s) 286
VpaK11BI GGWCC 2 cut(s) 387, 469
XapI RAATTY 1 cut(s) 763
XceI RCATGY 1 cut(s) 159
XcmI CCANNNNNNNNNTGG 1 cut(s) 649
ZrmI AGTACT 1 cut(s) 521
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.