FvH4_6g13610

Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015821
Physical Location & Seq
Forward (+)
8271545 .. 8274212
2668 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g13610.t1

Sequence Viewer

Length: 783 bp
ATGGCTTCCCTTCATCTCCGTCTCCTCTGCATTGCTTCACTGGCCTCTCTCCTCATGGTGGCTAATGCCAGAATCCCAGGGCCTTACACCGGTGGCCCCTGGCAGGAAGCCCACGCCACCTTCTACGGCGGCAGCGACGCCTCTGGAACCATGGGGGGTGCTTGTGGGTATGGAAACCTCTACAGCCAGGGCTACGGAGTCAACACTGCTGCACTGAGCACGGCTCTGTTCAACAATGGACTGAGCTGCGGCGCTTGCTTCGAGATCAAGTGCGGCGACGACCCAAGGTGGTGCACTGCCGGAAAGCCCTCCATCTTCGTCACCGCCACCAACTTCTGCCCTCCCAACTTCGCTCAGCCCAGCGACAATGGCGGTTGGTGCAACCCTCCCCGGACCCACTTCGACCTCGCCATGCCCATGTTCCTCAAGATCGCCGAGTACAAAGCCGGAATCGTCCCCGTCTCTTACCGCCGGGTCCCATGCGTAAAGAAGGGAGGGATCAGGTTCACAATCAACGGCCACAAGTACTTCAACCTGGTTCTGGTCACCAACGTCGCGGGCGCAGGGGATATCGTGAGCGTGAGCGTGAAGGGCACCAACACCGGGTGGATGCCAATGAGCCGGAACTGGGGGCAAAACTGGCAATCCAACTCCGTCCTGGTGGGCCAGGCCTTGTCCTTCAGAGTCAGAGGCAGCGACAGGCGTAGCTCCACGACCTACAACGTGGCGCCAGCTAATTGGCAGTTCGGACAGACCTATTCCGGAAAGAATTTCCGTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

27.94

Weight (kDa)

9.46

Isoelectric Point (pI)

30.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EXPB1_D1 PF22514 39 - 162 3.6e-08 EXPB1-like domain 1
DPBB_1 PF03330 69 - 156 4.8e-21 Lytic transglycolase
Expansin_C PF01357 167 - 244 9e-30 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015821)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37640 AT2G37640 AT5G02260
fragaria_vesca FvH4_6g13610
malus_domestica MD04G1129800.v1.1 MD12G1142900.v1.1
prunus_persica Prupe.6G256500_v2.0.a1
pyrus_communis pycom04g11810 pycom12g13760
rosa_chinensis RchiOBHm_Chr3g0466461
rosa_laevigata RLG00000024572
rosa_multiflora Rmu_sc0003332.1_g000023
rosa_rugosa Rorug03G0082100
rosa_samantha Rh3DG150700
rosa_wichuraiana Rw3G012170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 593, 727
AccII CGCG 1 cut(s) 557
AccIII TCCGGA 1 cut(s) 761
AciI CCGC 7 cut(s) 129, 249, 273, 324, 372, 469, 557
AclWI GGATC 1 cut(s) 506
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 769
AcuI CTGAAG 1 cut(s) 664
AcyI GRCGYC 2 cut(s) 138, 728
AdeI CACNNNGTG 1 cut(s) 606
AfaI GTAC 2 cut(s) 440, 527
AfiI CCNNNNNNNGG 6 cut(s) 58, 89, 103, 541, 603, 628
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 2 cut(s) 232, 532
AjnI CCWGG 6 cut(s) 76, 98, 186, 534, 657, 666
AluBI AGCT 3 cut(s) 246, 708, 734
AluI AGCT 3 cut(s) 246, 708, 734
Alw21I GWGCWC 2 cut(s) 221, 296
Alw26I GTCTC 2 cut(s) 26, 466
Alw44I GTGCAC 1 cut(s) 292
AlwI GGATC 1 cut(s) 506
Aor13HI TCCGGA 1 cut(s) 761
AoxI GGCC 6 cut(s) 42, 80, 94, 517, 664, 669
ApaLI GTGCAC 1 cut(s) 292
ApeKI GCWGC 4 cut(s) 132, 209, 246, 693
ApoI RAATTY 1 cut(s) 769
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 3 cut(s) 254, 563, 730
AspS9I GGNCC 5 cut(s) 80, 95, 393, 475, 664
AsuC2I CCSGG 3 cut(s) 391, 473, 604
AsuHPI GGTGA 2 cut(s) 313, 538
AvaII GGWCC 2 cut(s) 393, 475
BaeGI GKGCMC 2 cut(s) 296, 596
BanI GGYRCC 2 cut(s) 593, 727
Bbv12I GWGCWC 2 cut(s) 221, 296
BbvI GCAGC 4 cut(s) 144, 196, 233, 705
BccI CCATC 1 cut(s) 320
BceAI ACGGC 3 cut(s) 142, 237, 532
BciT130I CCWGG 6 cut(s) 78, 100, 188, 536, 659, 668
BcnI CCSGG 3 cut(s) 391, 473, 604
BcoDI GTCTC 2 cut(s) 26, 466
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 2 cut(s) 255, 731
BisI GCNGC 7 cut(s) 130, 133, 210, 247, 250, 274, 694
BlpI GCTNAGC 1 cut(s) 354
BlsI GCNGC 7 cut(s) 131, 134, 211, 248, 251, 275, 695
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 9 cut(s) 78, 100, 188, 391, 473, 536, 604, 659, 668
Bme18I GGWCC 2 cut(s) 393, 475
BmgT120I GGNCC 5 cut(s) 80, 95, 393, 475, 664
BmiI GGNNCC 7 cut(s) 97, 148, 395, 476, 477, 595, 729
BmrFI CCNGG 9 cut(s) 78, 100, 188, 391, 473, 536, 604, 659, 668
BmrI ACTGGG 1 cut(s) 637
BmsI GCATC 1 cut(s) 600
BmuI ACTGGG 1 cut(s) 637
BplI GAGNNNNNCTC 2 cut(s) 208, 240
Bpu1102I GCTNAGC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 410
BpuMI CCSGG 3 cut(s) 391, 473, 604
BsaHI GRCGYC 2 cut(s) 138, 728
BsaJI CCNNGG 7 cut(s) 76, 77, 98, 150, 187, 284, 389
BsaWI WCCGGW 2 cut(s) 89, 761
Bsc4I CCNNNNNNNGG 6 cut(s) 58, 89, 103, 541, 603, 628
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 3 cut(s) 45, 632, 644
Bse3DI GCAATG 1 cut(s) 30
BseAI TCCGGA 1 cut(s) 761
BseBI CCWGG 6 cut(s) 78, 100, 188, 536, 659, 668
BseDI CCNNGG 7 cut(s) 76, 77, 98, 150, 187, 284, 389
BseGI GGATG 1 cut(s) 615
BseLI CCNNNNNNNGG 6 cut(s) 58, 89, 103, 541, 603, 628
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 3 cut(s) 206, 233, 368
BseNI ACTGG 3 cut(s) 45, 632, 644
BseRI GAGGAG 2 cut(s) 14, 41
BseSI GKGCMC 2 cut(s) 296, 596
BseXI GCAGC 4 cut(s) 144, 196, 233, 705
BseYI CCCAGC 1 cut(s) 359
BsgI GTGCAG 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 557
BshFI GGCC 6 cut(s) 44, 82, 96, 519, 666, 671
BshNI GGYRCC 2 cut(s) 593, 727
BshTI ACCGGT 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 221, 296
BsiSI CCGG 8 cut(s) 90, 300, 391, 447, 472, 603, 622, 762
BslFI GGGAC 2 cut(s) 440, 461
BslI CCNNNNNNNGG 6 cut(s) 58, 89, 103, 541, 603, 628
BsmAI GTCTC 2 cut(s) 26, 466
BsmBI CGTCTC 2 cut(s) 26, 466
BsmFI GGGAC 2 cut(s) 440, 461
BsnI GGCC 6 cut(s) 44, 82, 96, 519, 666, 671
Bsp1286I GDGCHC 3 cut(s) 221, 296, 596
Bsp13I TCCGGA 1 cut(s) 761
Bsp143I GATC 3 cut(s) 264, 429, 498
Bsp1720I GCTNAGC 1 cut(s) 354
Bsp19I CCATGG 1 cut(s) 150
BspACI CCGC 7 cut(s) 129, 249, 273, 324, 372, 469, 557
BspANI GGCC 6 cut(s) 44, 82, 96, 519, 666, 671
BspCNI CTCAG 3 cut(s) 207, 234, 367
BspEI TCCGGA 1 cut(s) 761
BspFNI CGCG 1 cut(s) 557
BspLI GGNNCC 7 cut(s) 97, 148, 395, 476, 477, 595, 729
BspPI GGATC 1 cut(s) 506
BspT107I GGYRCC 2 cut(s) 593, 727
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 3 cut(s) 45, 632, 644
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 7 cut(s) 76, 77, 98, 150, 187, 284, 389
BssMI GATC 3 cut(s) 264, 429, 498
BssNI GRCGYC 2 cut(s) 138, 728
BssT1I CCWWGG 2 cut(s) 150, 284
Bst2UI CCWGG 6 cut(s) 78, 100, 188, 536, 659, 668
BstACI GRCGYC 2 cut(s) 138, 728
BstC8I GCNNGC 3 cut(s) 256, 559, 732
BstDEI CTNAG 3 cut(s) 215, 242, 354
BstDSI CCRYGG 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 544
BstF5I GGATG 1 cut(s) 615
BstFNI CGCG 1 cut(s) 557
BstH2I RGCGCY 2 cut(s) 255, 731
BstHHI GCGC 3 cut(s) 254, 563, 730
BstKTI GATC 3 cut(s) 267, 432, 501
BstMAI GTCTC 2 cut(s) 26, 466
BstMBI GATC 3 cut(s) 264, 429, 498
BstMWI GCNNNNNNNGC 6 cut(s) 41, 255, 369, 378, 591, 640
BstNI CCWGG 6 cut(s) 78, 100, 188, 536, 659, 668
BstPI GGTNACC 1 cut(s) 544
BstSCI CCNGG 9 cut(s) 76, 98, 186, 389, 471, 534, 602, 657, 666
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 2 cut(s) 296, 596
BstUI CGCG 1 cut(s) 557
BstV1I GCAGC 4 cut(s) 144, 196, 233, 705
BstXI CCANNNNNNTGG 1 cut(s) 738
BsuRI GGCC 6 cut(s) 44, 82, 96, 519, 666, 671
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 615
BtsI GCAGTG 2 cut(s) 204, 294
BtsIMutI CAGTG 4 cut(s) 38, 204, 212, 294
Cac8I GCNNGC 3 cut(s) 256, 559, 732
CfoI GCGC 3 cut(s) 254, 563, 730
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 5 cut(s) 80, 95, 393, 475, 664
CseI GACGC 1 cut(s) 146
CsiI ACCWGGT 1 cut(s) 534
Csp6I GTAC 2 cut(s) 439, 526
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 5 cut(s) 55, 151, 412, 418, 480
CviQI GTAC 2 cut(s) 439, 526
DdeI CTNAG 3 cut(s) 215, 242, 354
DinI GGCGCC 1 cut(s) 729
DpnI GATC 3 cut(s) 266, 431, 500
DpnII GATC 3 cut(s) 264, 429, 498
DraIII CACNNNGTG 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 150, 284
Eco147I AGGCCT 1 cut(s) 671
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 2 cut(s) 393, 475
Eco57I CTGAAG 1 cut(s) 664
Eco91I GGTNACC 1 cut(s) 544
EcoO109I RGGNCCY 2 cut(s) 80, 475
EcoO65I GGTNACC 1 cut(s) 544
EcoRII CCWGG 6 cut(s) 76, 98, 186, 534, 657, 666
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 2 cut(s) 150, 284
EgeI GGCGCC 1 cut(s) 729
EheI GGCGCC 1 cut(s) 729
ErhI CCWWGG 2 cut(s) 150, 284
Esp3I CGTCTC 2 cut(s) 26, 466
FaeI CATG 5 cut(s) 58, 154, 415, 421, 483
FaiI YATR 6 cut(s) 56, 152, 171, 413, 419, 481
FaqI GGGAC 2 cut(s) 440, 461
FatI CATG 5 cut(s) 54, 150, 411, 417, 479
FauI CCCGC 1 cut(s) 550
Fnu4HI GCNGC 7 cut(s) 130, 133, 210, 247, 250, 274, 694
FokI GGATG 1 cut(s) 622
Fsp4HI GCNGC 7 cut(s) 130, 133, 210, 247, 250, 274, 694
GlaI GCGC 3 cut(s) 253, 562, 729
GluI GCNGC 7 cut(s) 130, 133, 210, 247, 250, 274, 694
GsaI CCCAGC 1 cut(s) 363
HaeII RGCGCY 2 cut(s) 255, 731
HaeIII GGCC 6 cut(s) 44, 82, 96, 519, 666, 671
HapII CCGG 8 cut(s) 90, 300, 391, 447, 472, 603, 622, 762
HgaI GACGC 1 cut(s) 146
HhaI GCGC 3 cut(s) 254, 563, 730
Hin1I GRCGYC 2 cut(s) 138, 728
Hin1II CATG 5 cut(s) 58, 154, 415, 421, 483
Hin6I GCGC 3 cut(s) 252, 561, 728
HinP1I GCGC 3 cut(s) 252, 561, 728
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 4 cut(s) 72, 198, 450, 684
HpaII CCGG 8 cut(s) 90, 300, 391, 447, 472, 603, 622, 762
HphI GGTGA 2 cut(s) 313, 538
Hpy166II GTNNAC 3 cut(s) 202, 294, 507
Hpy188I TCNGA 4 cut(s) 683, 689, 749, 782
Hpy188III TCNNGA 5 cut(s) 144, 262, 427, 574, 762
Hpy8I GTNNAC 3 cut(s) 202, 294, 507
Hpy99I CGWCG 3 cut(s) 140, 281, 557
HpyAV CCTTC 5 cut(s) 20, 130, 484, 583, 688
HpyCH4IV ACGT 2 cut(s) 552, 723
HpyCH4V TGCA 4 cut(s) 30, 212, 294, 381
HpyF10VI GCNNNNNNNGC 6 cut(s) 41, 255, 369, 378, 591, 640
HpyF3I CTNAG 3 cut(s) 215, 242, 354
HpySE526I ACGT 2 cut(s) 552, 723
Hsp92I GRCGYC 2 cut(s) 138, 728
Hsp92II CATG 5 cut(s) 58, 154, 415, 421, 483
HspAI GCGC 3 cut(s) 252, 561, 728
KasI GGCGCC 1 cut(s) 727
KflI GGGWCCC 1 cut(s) 475
Kpn2I TCCGGA 1 cut(s) 761
Kzo9I GATC 3 cut(s) 264, 429, 498
LmnI GCTCC 1 cut(s) 713
Lsp1109I GCAGC 4 cut(s) 144, 196, 233, 705
LweI GCATC 1 cut(s) 600
MabI ACCWGGT 1 cut(s) 534
MaeII ACGT 2 cut(s) 552, 723
MaeIII GTNAC 2 cut(s) 319, 544
MalI GATC 3 cut(s) 266, 431, 500
MboI GATC 3 cut(s) 264, 429, 498
MboII GAAGA 1 cut(s) 307
MhlI GDGCHC 3 cut(s) 221, 296, 596
MluCI AATT 2 cut(s) 736, 769
Mly113I GGCGCC 1 cut(s) 728
MlyI GAGTC 2 cut(s) 207, 693
MmeI TCCRAC 1 cut(s) 672
MroI TCCGGA 1 cut(s) 761
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 8 cut(s) 90, 300, 391, 447, 472, 603, 622, 762
MspR9I CCNGG 9 cut(s) 78, 100, 188, 391, 473, 536, 604, 659, 668
MvaI CCWGG 6 cut(s) 78, 100, 188, 536, 659, 668
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 6 cut(s) 41, 255, 369, 378, 591, 640
NarI GGCGCC 1 cut(s) 728
NciI CCSGG 3 cut(s) 391, 473, 604
NcoI CCATGG 1 cut(s) 150
NdeII GATC 3 cut(s) 264, 429, 498
NlaIII CATG 5 cut(s) 58, 154, 415, 421, 483
NlaIV GGNNCC 7 cut(s) 97, 148, 395, 476, 477, 595, 729
NmeAIII GCCGAG 1 cut(s) 460
NmuCI GTSAC 2 cut(s) 319, 544
PasI CCCWGGG 1 cut(s) 77
PceI AGGCCT 1 cut(s) 671
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PfeI GAWTC 2 cut(s) 72, 450
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 7 cut(s) 131, 134, 211, 248, 251, 275, 695
PleI GAGTC 2 cut(s) 206, 692
PluTI GGCGCC 1 cut(s) 731
PpsI GAGTC 2 cut(s) 206, 692
PpuMI RGGWCCY 1 cut(s) 475
Psp5II RGGWCCY 1 cut(s) 475
Psp6I CCWGG 6 cut(s) 76, 98, 186, 534, 657, 666
PspEI GGTNACC 1 cut(s) 544
PspFI CCCAGC 1 cut(s) 359
PspGI CCWGG 6 cut(s) 76, 98, 186, 534, 657, 666
PspN4I GGNNCC 7 cut(s) 97, 148, 395, 476, 477, 595, 729
PspPI GGNCC 5 cut(s) 80, 95, 393, 475, 664
PspPPI RGGWCCY 1 cut(s) 475
RsaI GTAC 2 cut(s) 440, 527
RsaNI GTAC 2 cut(s) 439, 526
RseI CAYNNNNRTG 1 cut(s) 416
SatI GCNGC 7 cut(s) 130, 133, 210, 247, 250, 274, 694
Sau3AI GATC 3 cut(s) 264, 429, 498
Sau96I GGNCC 5 cut(s) 80, 95, 393, 475, 664
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 2 cut(s) 207, 693
ScrFI CCNGG 9 cut(s) 78, 100, 188, 391, 473, 536, 604, 659, 668
SduI GDGCHC 3 cut(s) 221, 296, 596
SexAI ACCWGGT 1 cut(s) 534
SfaNI GCATC 1 cut(s) 600
SfcI CTRYAG 1 cut(s) 181
SfoI GGCGCC 1 cut(s) 729
SgrAI CRCCGGYG 1 cut(s) 89
SinI GGWCC 2 cut(s) 393, 475
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 2 cut(s) 736, 769
SseBI AGGCCT 1 cut(s) 671
SsiI CCGC 7 cut(s) 129, 249, 273, 324, 372, 469, 557
SspDI GGCGCC 1 cut(s) 727
StuI AGGCCT 1 cut(s) 671
StyD4I CCNGG 9 cut(s) 76, 98, 186, 389, 471, 534, 602, 657, 666
StyI CCWWGG 2 cut(s) 150, 284
TaiI ACGT 2 cut(s) 555, 726
TaqI TCGA 2 cut(s) 261, 402
TasI AATT 2 cut(s) 736, 769
TatI WGTACW 2 cut(s) 438, 525
TauI GCSGC 3 cut(s) 132, 252, 276
TfiI GAWTC 2 cut(s) 72, 450
TscAI CASTG 4 cut(s) 45, 211, 219, 301
TseFI GTSAC 2 cut(s) 319, 544
TseI GCWGC 4 cut(s) 132, 209, 246, 693
Tsp45I GTSAC 2 cut(s) 319, 544
TspGWI ACGGA 4 cut(s) 8, 210, 643, 764
TspRI CASTG 4 cut(s) 45, 211, 219, 301
VneI GTGCAC 1 cut(s) 292
VpaK11BI GGWCC 2 cut(s) 393, 475
XapI RAATTY 1 cut(s) 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 655
ZrmI AGTACT 1 cut(s) 527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.