Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012954

Physical Location & Seq

Genomic Coordinates Reverse (-)

15795213 .. 15797059

Gene Structure 1847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G37660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGATGATGACGACGACGACGACAACATTCTTCCATCCACTACTTCCTGCTAACACTTACAAATCCGGAGCTGTAGCTTCTTCCTTTGTCTCAGTTCCTCGTTCGTCGTCTCTCCAATTTCGCTCACTTGTGTCAGATTCTACGTCGATTTGTGGTCCAAGTAAGTTCACCGGAAAAAACAGAAGAGTATCGGTTACCGTTTCCGCCGCCGCAACAACTGAACCTCTCACCGTCCTCGTTACCGGTGCCGGTGGAAGAACAGGACAAATTGTGTATAAGAAATTGAAGGAGAGGTCGGAGCAGTTCGTGGCAAGGGGTTTAGTGAGGACAAAGGAGAGTAAGGAGAAGATCAATGGAGAGGATGAAGTATTCATTGGAGATATTAGAGATACTGCATCAATTGCTCCTGCTGTTGAAGGGATTGATGCTTTGGTCATTCTTACTAGCGCTGTTCCGCAGATGAAGCCCGGTTTTGATCCTAGTAAAGGAGGAAGACCTGAGTTCTTCTTTGATGATGGAGCTTATCCAGAACAGGTTGACTGGATTGGTCAGAAGAATCAGATAGACGCTGCTAAGGCTGCAGGAGTTAAGCAGATTGTTTTGGTTGGGTCGATGGGAGGAACAAACATTAATCACCCTCTCAATAGTATTGGCAATGCTAACATTCTGGTCTGGAAGAGAAAGGCTGAGCAATACTTGGCTGATTCCGGTATTCCATACACCATCATCAGGGCTGGAGGTCTGCAGGACAAGGACGGTGGCATTCGAGAATTACTTGTGGGAAAAGATGACGAGCTACTTGAGACAGAAACAAGAACAATCGCAAGAGCTGATGTTGCAGAAGTCTGTGTTCAGGCATTGCAGCTTGAGGAGGCAAAATTCAAAGCTCTTGACCTGGCCTCAAAGCCCGAGGGAACAGGCACCCCAACAAAGGATTTCAAGGCGCTTTTCACTCAAGTAACCACTAAGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0016020 GO:0031090 GO:0033993 GO:0042221 GO:0042742 GO:0043167 GO:0043169 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0097305 GO:0098542 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

325

Amino Acids

34.88

Weight (kDa)

8.37

Isoelectric Point (pI)

30.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	78 - 244	1.1e-08	NmrA-like family
NAD_binding_10	PF13460	83 - 289	3.1e-35	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37660 AT5G02240
fragaria_vesca	FvH4_6g13500
malus_domestica	MD04G1130500.v1.1 MD12G1143700.v1.1
prunus_persica	Prupe.6G257200_v2.0.a1 Prupe.6G257200_v2.0.a1
pyrus_communis	pycom04g11880 pycom12g13840
rosa_chinensis	RchiOBHm_Chr3g0466371
rosa_laevigata	RLG00000024580
rosa_multiflora	Rmu_sc0003480.1_g000005
rosa_roxburghii	Rroxscaffold_6G00414530
rosa_rugosa	Rorug03G0081300
rosa_samantha	Rh3AG127800 Rh3BG149100 Rh3DG149800
rosa_wichuraiana	Rw3G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	248, 923
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	4 cut(s)	207, 210, 213, 458
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	1 cut(s)	881
AfeI	AGCGCT	1 cut(s)	451
AfiI	CCNNNNNNNGG	3 cut(s)	488, 732, 934
AgeI	ACCGGT	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	289, 419, 886, 943
AjnI	CCWGG	1 cut(s)	897
AjuI	GAANNNNNNNTTGG	2 cut(s)	360, 392
AluBI	AGCT	7 cut(s)	74, 80, 524, 799, 833, 868, 890
AluI	AGCT	7 cut(s)	74, 80, 524, 799, 833, 868, 890
Alw26I	GTCTC	3 cut(s)	97, 117, 800
AlwI	GGATC	1 cut(s)	473
Ama87I	CYCGRG	1 cut(s)	911
Aor13HI	TCCGGA	1 cut(s)	68
Aor51HI	AGCGCT	1 cut(s)	451
AoxI	GGCC	1 cut(s)	900
ApeKI	GCWGC	3 cut(s)	572, 581, 865
ApoI	RAATTY	1 cut(s)	881
AseI	ATTAAT	1 cut(s)	633
AsiGI	ACCGGT	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	452, 949
AspS9I	GGNCC	1 cut(s)	158
AsuC2I	CCSGG	1 cut(s)	471
AsuHPI	GGTGA	3 cut(s)	163, 223, 629
AvaI	CYCGRG	1 cut(s)	911
AvaII	GGWCC	1 cut(s)	158
BanI	GGYRCC	2 cut(s)	248, 923
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	3 cut(s)	559, 568, 877
BccI	CCATC	4 cut(s)	45, 512, 610, 734
BciT130I	CCWGG	1 cut(s)	899
BcnI	CCSGG	1 cut(s)	471
BcoDI	GTCTC	3 cut(s)	97, 117, 800
BfaI	CTAG	2 cut(s)	447, 483
BfmI	CTRYAG	3 cut(s)	75, 582, 746
BfoI	RGCGCY	2 cut(s)	453, 950
BisI	GCNGC	5 cut(s)	210, 213, 573, 582, 866
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	5 cut(s)	211, 214, 574, 583, 867
Bme1390I	CCNGG	2 cut(s)	471, 899
Bme18I	GGWCC	1 cut(s)	158
BmeT110I	CYCGRG	1 cut(s)	911
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	2 cut(s)	250, 925
BmrFI	CCNGG	2 cut(s)	471, 899
BmsI	GCATC	2 cut(s)	407, 418
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	759
Bpu10I	CCTNAGC	1 cut(s)	576
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	3 cut(s)	824, 890, 942
BpuMI	CCSGG	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	912
BsaWI	WCCGGW	4 cut(s)	68, 173, 245, 710
Bsc4I	CCNNNNNNNGG	3 cut(s)	488, 732, 934
Bse118I	RCCGGY	2 cut(s)	245, 251
Bse1I	ACTGG	1 cut(s)	548
Bse3DI	GCAATG	2 cut(s)	664, 860
BseAI	TCCGGA	1 cut(s)	68
BseBI	CCWGG	1 cut(s)	899
BseDI	CCNNGG	1 cut(s)	912
BseGI	GGATG	2 cut(s)	37, 370
BseLI	CCNNNNNNNGG	3 cut(s)	488, 732, 934
BseMI	GCAATG	2 cut(s)	664, 860
BseMII	CTCAG	3 cut(s)	108, 492, 681
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	1 cut(s)	887
BseXI	GCAGC	3 cut(s)	559, 568, 877
BshFI	GGCC	1 cut(s)	902
BshNI	GGYRCC	2 cut(s)	248, 923
BshTI	ACCGGT	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	911
BsiSI	CCGG	6 cut(s)	69, 174, 246, 252, 471, 711
BslI	CCNNNNNNNGG	3 cut(s)	488, 732, 934
BsmAI	GTCTC	3 cut(s)	97, 117, 800
BsmBI	CGTCTC	1 cut(s)	117
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	1 cut(s)	902
BsoBI	CYCGRG	1 cut(s)	911
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	351, 478
Bsp1720I	GCTNAGC	1 cut(s)	690
BspACI	CCGC	4 cut(s)	207, 210, 213, 458
BspANI	GGCC	1 cut(s)	902
BspCNI	CTCAG	3 cut(s)	107, 493, 682
BspEI	TCCGGA	1 cut(s)	68
BspLI	GGNNCC	2 cut(s)	250, 925
BspMAI	CTGCAG	2 cut(s)	586, 750
BspPI	GGATC	1 cut(s)	473
BspT107I	GGYRCC	2 cut(s)	248, 923
BsrDI	GCAATG	2 cut(s)	664, 860
BsrFI	RCCGGY	2 cut(s)	245, 251
BsrI	ACTGG	1 cut(s)	548
BssAI	RCCGGY	2 cut(s)	245, 251
BssECI	CCNNGG	1 cut(s)	912
BssMI	GATC	2 cut(s)	351, 478
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	3 cut(s)	202, 235, 761
Bst6I	CTCTTC	2 cut(s)	181, 674
BstAPI	GCANNNNNTGC	1 cut(s)	404
BstDEI	CTNAG	5 cut(s)	94, 501, 576, 690, 969
BstEII	GGTNACC	1 cut(s)	196
BstENI	CCTNNNNNAGG	1 cut(s)	486
BstF5I	GGATG	2 cut(s)	37, 370
BstH2I	RGCGCY	2 cut(s)	453, 950
BstHHI	GCGC	2 cut(s)	452, 949
BstKTI	GATC	2 cut(s)	354, 481
BstMAI	GTCTC	3 cut(s)	97, 117, 800
BstMBI	GATC	2 cut(s)	351, 478
BstMWI	GCNNNNNNNGC	5 cut(s)	404, 466, 578, 581, 839
BstNI	CCWGG	1 cut(s)	899
BstPI	GGTNACC	1 cut(s)	196
BstSCI	CCNGG	2 cut(s)	469, 897
BstSFI	CTRYAG	3 cut(s)	75, 582, 746
BstV1I	GCAGC	3 cut(s)	559, 568, 877
BstV2I	GAAGAC	1 cut(s)	502
BsuRI	GGCC	1 cut(s)	902
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	2 cut(s)	37, 370
CfoI	GCGC	2 cut(s)	452, 949
Cfr10I	RCCGGY	2 cut(s)	245, 251
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	578
CspAI	ACCGGT	1 cut(s)	245
CspCI	CAANNNNNGTGG	2 cut(s)	742, 777
DdeI	CTNAG	5 cut(s)	94, 501, 576, 690, 969
DpnI	GATC	2 cut(s)	353, 480
DpnII	GATC	2 cut(s)	351, 478
Eam1104I	CTCTTC	2 cut(s)	181, 674
EarI	CTCTTC	2 cut(s)	181, 674
EciI	GGCGGA	1 cut(s)	196
Eco47I	GGWCC	1 cut(s)	158
Eco47III	AGCGCT	1 cut(s)	451
Eco88I	CYCGRG	1 cut(s)	911
Eco91I	GGTNACC	1 cut(s)	196
EcoNI	CCTNNNNNAGG	1 cut(s)	486
EcoO65I	GGTNACC	1 cut(s)	196
EcoRII	CCWGG	1 cut(s)	897
Esp3I	CGTCTC	1 cut(s)	117
FaiI	YATR	2 cut(s)	279, 721
Fnu4HI	GCNGC	5 cut(s)	210, 213, 573, 582, 866
FokI	GGATG	2 cut(s)	24, 377
Fsp4HI	GCNGC	5 cut(s)	210, 213, 573, 582, 866
FspBI	CTAG	2 cut(s)	447, 483
GlaI	GCGC	2 cut(s)	451, 948
GluI	GCNGC	5 cut(s)	210, 213, 573, 582, 866
GsuI	CTGGAG	1 cut(s)	759
HaeII	RGCGCY	2 cut(s)	453, 950
HaeIII	GGCC	1 cut(s)	902
HapII	CCGG	6 cut(s)	69, 174, 246, 252, 471, 711
HgaI	GACGC	1 cut(s)	578
HhaI	GCGC	2 cut(s)	452, 949
Hin6I	GCGC	2 cut(s)	450, 947
HinP1I	GCGC	2 cut(s)	450, 947
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	3 cut(s)	140, 559, 707
HpaII	CCGG	6 cut(s)	69, 174, 246, 252, 471, 711
HphI	GGTGA	3 cut(s)	163, 223, 629
Hpy166II	GTNNAC	2 cut(s)	171, 541
Hpy188I	TCNGA	5 cut(s)	139, 301, 555, 564, 977
Hpy188III	TCNNGA	5 cut(s)	69, 530, 676, 770, 893
Hpy8I	GTNNAC	2 cut(s)	171, 541
Hpy99I	CGWCG	5 cut(s)	19, 22, 25, 112, 151
HpyAV	CCTTC	2 cut(s)	283, 413
HpyCH4III	ACNGT	3 cut(s)	202, 235, 761
HpyCH4IV	ACGT	1 cut(s)	146
HpyCH4V	TGCA	5 cut(s)	398, 584, 748, 842, 865
HpyF10VI	GCNNNNNNNGC	5 cut(s)	404, 466, 578, 581, 839
HpyF3I	CTNAG	5 cut(s)	94, 501, 576, 690, 969
HpySE526I	ACGT	1 cut(s)	146
HspAI	GCGC	2 cut(s)	450, 947
Kpn2I	TCCGGA	1 cut(s)	68
Kzo9I	GATC	2 cut(s)	351, 478
LmnI	GCTCC	4 cut(s)	71, 301, 412, 521
Lsp1109I	GCAGC	3 cut(s)	559, 568, 877
LweI	GCATC	2 cut(s)	407, 418
MaeI	CTAG	2 cut(s)	447, 483
MaeII	ACGT	1 cut(s)	146
MaeIII	GTNAC	3 cut(s)	196, 241, 961
MalI	GATC	2 cut(s)	353, 480
MboI	GATC	2 cut(s)	351, 478
MboII	GAAGA	9 cut(s)	25, 75, 198, 270, 361, 499, 507, 568, 691
MfeI	CAATTG	1 cut(s)	402
MluCI	AATT	6 cut(s)	119, 270, 284, 402, 773, 881
MmeI	TCCRAC	1 cut(s)	279
MroI	TCCGGA	1 cut(s)	68
MseI	TTAA	2 cut(s)	591, 633
MspI	CCGG	6 cut(s)	69, 174, 246, 252, 471, 711
MspR9I	CCNGG	2 cut(s)	471, 899
MunI	CAATTG	1 cut(s)	402
Mva1269I	GAATGC	1 cut(s)	765
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	5 cut(s)	404, 466, 578, 581, 839
NciI	CCSGG	1 cut(s)	471
NdeII	GATC	2 cut(s)	351, 478
NlaIV	GGNNCC	2 cut(s)	250, 925
PcsI	WCGNNNNNNNCGW	1 cut(s)	20
PctI	GAATGC	1 cut(s)	765
PfeI	GAWTC	3 cut(s)	140, 559, 707
PinAI	ACCGGT	1 cut(s)	245
PkrI	GCNGC	5 cut(s)	211, 214, 574, 583, 867
PshBI	ATTAAT	1 cut(s)	633
Psp6I	CCWGG	1 cut(s)	897
PspEI	GGTNACC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	897
PspN4I	GGNNCC	2 cut(s)	250, 925
PspPI	GGNCC	1 cut(s)	158
PstI	CTGCAG	2 cut(s)	586, 750
SaqAI	TTAA	2 cut(s)	591, 633
SatI	GCNGC	5 cut(s)	210, 213, 573, 582, 866
Sau3AI	GATC	2 cut(s)	351, 478
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	471, 899
SfaNI	GCATC	2 cut(s)	407, 418
SfcI	CTRYAG	3 cut(s)	75, 582, 746
SinI	GGWCC	1 cut(s)	158
SmlI	CTYRAG	3 cut(s)	803, 869, 957
SmoI	CTYRAG	3 cut(s)	803, 869, 957
Sse9I	AATT	6 cut(s)	119, 270, 284, 402, 773, 881
SsiI	CCGC	4 cut(s)	207, 210, 213, 458
SspMI	CTAG	2 cut(s)	447, 483
StyD4I	CCNGG	2 cut(s)	469, 897
TaaI	ACNGT	3 cut(s)	202, 235, 761
TaiI	ACGT	1 cut(s)	149
TaqI	TCGA	3 cut(s)	149, 614, 769
TasI	AATT	6 cut(s)	119, 270, 284, 402, 773, 881
TauI	GCSGC	2 cut(s)	212, 215
TfiI	GAWTC	3 cut(s)	140, 559, 707
Tru1I	TTAA	2 cut(s)	591, 633
Tru9I	TTAA	2 cut(s)	591, 633
TseI	GCWGC	3 cut(s)	572, 581, 865
TspDTI	ATGAA	3 cut(s)	364, 381, 479
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	633
XagI	CCTNNNNNAGG	1 cut(s)	486
XapI	RAATTY	1 cut(s)	881
XspI	CTAG	2 cut(s)	447, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.