Prupe.6G257200_v2.0.a1

protein At2g37660, chloroplastic-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0012954
Physical Location & Seq
Reverse (-)
24970341 .. 24973165
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G257200.1

Sequence Viewer

Length: 993 bp
ATGGCAACGGTGGCAGTGGCACCACGTGTCCCCTTGGTGATCTCAAATATTAATTGTAGATTTAGCAACAGTCGCAGCGTCCGTCAATGTCATAAATGTAGTTGGGTGGCACATCCAGAAAGTTCGAGCCTTTATTTTCATTATTCGACTTCATTTTCTGCTTCATCCGTGTTTGTCCAGAGAAGGGTGAGAAAGGGTTTTAGGAGTGTACGAGTGATCACAAAGGCGATGGCGGATTCGGGTCCAAGCACAGTCCTTGTCACTGGAGCTGGTGGTAGAACTGGTAAAATAGTTTATAAGAAGTTAAGGGAGGCAGACCAGTATGTTGCTAGGGGTCTGGTTAGGACAGAAGAGAGCAAAGAGAGCATTGGTGGAGCAGATGATATTTTTATTGGAGATATAAGGGATGCCAACAGCATTCTACCTGCAATTCAAGGCATTGATGCTCTCGTTATCCTTACAAGTGCTGTGCCAAAGATGAAACCTGGATTTGATCCAACCAAAGGTGGGAGGCCTGAATTCTATTTTGACGATGGGTCATATCCTGAACAGGTTGATTGGATTGGACAGAAAAACCAAATAGATGCTGCTAAGGCTGCGGGAGTGAAGCAAATTGTGTTAGTTGGGTCTATGGGTGGAACAGATATTAATAATCCCCTCAATAGCTTGGGTAATGGGAATATATTGGTTTGGAAGAGGAAGGCTGAGCAGTATTTGGCTGACTCTGGTGTTCCATACACAATCATAAGGGCTGGAGGCTTGCAAGATAAAGAAGGCGGTATCCGTGAACTACTGATTGGAAAGGATGATGAGCTTCTGAAGACAGAAACAAGAACCATTGCCAGAGCTGATGTTGCAGAAGTCTGCATTCAGGCACTACAGTTCGAGGAGGCCAAGTTTAAAGCATTTGATTTGGCCTCAAAGCCTGAGGGAACTGGGACACCAACCAAGGATTTCAAGGCTCTATTTTCCCAGATCACTACTCGGTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAD_binding_10

Protein Analysis

331

Amino Acids

35.9

Weight (kDa)

9.23

Isoelectric Point (pI)

37.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012954)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37660 AT5G02240
fragaria_vesca FvH4_6g13500
malus_domestica MD04G1130500.v1.1 MD12G1143700.v1.1
prunus_persica Prupe.6G257200_v2.0.a1 Prupe.6G257200_v2.0.a1
pyrus_communis pycom04g11880 pycom12g13840
rosa_chinensis RchiOBHm_Chr3g0466371
rosa_laevigata RLG00000024580
rosa_multiflora Rmu_sc0003480.1_g000005
rosa_roxburghii Rroxscaffold_6G00414530
rosa_rugosa Rorug03G0081300
rosa_samantha Rh3AG127800 Rh3BG149100 Rh3DG149800
rosa_wichuraiana Rw3G012070

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 297
Acc36I ACCTGC 1 cut(s) 433
AccB1I GGYRCC 1 cut(s) 19
AciI CCGC 3 cut(s) 233, 599, 777
AclWI GGATC 1 cut(s) 488
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 839
AcvI CACGTG 1 cut(s) 26
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 1 cut(s) 210
AfiI CCNNNNNNNGG 3 cut(s) 184, 503, 507
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 2 cut(s) 434, 958
AhdI GACNNNNNGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 484
AjuI GAANNNNNNNTTGG 2 cut(s) 780, 812
AluBI AGCT 4 cut(s) 269, 666, 814, 848
AluI AGCT 4 cut(s) 269, 666, 814, 848
AlwI GGATC 1 cut(s) 488
AoxI GGCC 3 cut(s) 512, 891, 915
ApeKI GCWGC 3 cut(s) 75, 587, 596
ApoI RAATTY 1 cut(s) 518
AseI ATTAAT 2 cut(s) 51, 648
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 2 cut(s) 49, 199
AvaII GGWCC 1 cut(s) 242
AxyI CCTNAGG 1 cut(s) 927
BanI GGYRCC 1 cut(s) 19
BbrPI CACGTG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 827
BbvI GCAGC 3 cut(s) 87, 574, 583
BccI CCATC 2 cut(s) 223, 527
BciT130I CCWGG 1 cut(s) 486
BciVI GTATCC 1 cut(s) 791
BclI TGATCA 1 cut(s) 216
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 1 cut(s) 878
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 1 cut(s) 791
BisI GCNGC 3 cut(s) 76, 588, 597
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 3 cut(s) 77, 589, 598
Bme1390I CCNGG 1 cut(s) 486
Bme18I GGWCC 1 cut(s) 242
BmeRI GACNNNNNGTC 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 2 cut(s) 21, 243
BmrFI CCNGG 1 cut(s) 486
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 3 cut(s) 397, 433, 574
BmuI ACTGGG 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 2 cut(s) 285, 774
Bpu10I CCTNAGC 1 cut(s) 591
Bpu1102I GCTNAGC 1 cut(s) 705
BsaAI YACGTR 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 33, 948
BsaXI ACNNNNNCTCC 2 cut(s) 881, 911
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 503, 507
Bse1I ACTGG 4 cut(s) 268, 286, 319, 940
Bse21I CCTNAGG 1 cut(s) 927
Bse3DI GCAATG 1 cut(s) 837
BseBI CCWGG 1 cut(s) 486
BseDI CCNNGG 2 cut(s) 33, 948
BseGI GGATG 4 cut(s) 112, 164, 412, 811
BseLI CCNNNNNNNGG 3 cut(s) 184, 503, 507
BseMI GCAATG 1 cut(s) 837
BseMII CTCAG 2 cut(s) 696, 918
BseNI ACTGG 4 cut(s) 268, 286, 319, 940
BseRI GAGGAG 1 cut(s) 902
BseXI GCAGC 3 cut(s) 87, 574, 583
BshFI GGCC 3 cut(s) 514, 893, 917
BshNI GGYRCC 1 cut(s) 19
BslFI GGGAC 2 cut(s) 14, 952
BslI CCNNNNNNNGG 3 cut(s) 184, 503, 507
BsmFI GGGAC 2 cut(s) 14, 952
BsmI GAATGC 2 cut(s) 417, 867
BsnI GGCC 3 cut(s) 514, 893, 917
Bsp143I GATC 4 cut(s) 39, 216, 493, 975
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 3 cut(s) 233, 599, 777
BspANI GGCC 3 cut(s) 514, 893, 917
BspCNI CTCAG 2 cut(s) 697, 919
BspLI GGNNCC 2 cut(s) 21, 243
BspMI ACCTGC 1 cut(s) 433
BspPI GGATC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 837
BsrI ACTGG 4 cut(s) 268, 286, 319, 940
BssECI CCNNGG 2 cut(s) 33, 948
BssMI GATC 4 cut(s) 39, 216, 493, 975
BssT1I CCWWGG 2 cut(s) 33, 948
Bst2UI CCWGG 1 cut(s) 486
Bst4CI ACNGT 4 cut(s) 10, 71, 253, 882
Bst6I CTCTTC 2 cut(s) 345, 689
BstBAI YACGTR 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 761
BstDEI CTNAG 3 cut(s) 591, 705, 927
BstF5I GGATG 4 cut(s) 112, 164, 412, 811
BstKTI GATC 4 cut(s) 42, 219, 496, 978
BstMBI GATC 4 cut(s) 39, 216, 493, 975
BstMWI GCNNNNNNNGC 6 cut(s) 11, 72, 363, 593, 596, 854
BstNI CCWGG 1 cut(s) 486
BstSCI CCNGG 1 cut(s) 484
BstSFI CTRYAG 1 cut(s) 878
BstV1I GCAGC 3 cut(s) 87, 574, 583
BstV2I GAAGAC 1 cut(s) 827
Bsu36I CCTNAGG 1 cut(s) 927
BsuI GTATCC 1 cut(s) 791
BsuRI GGCC 3 cut(s) 514, 893, 917
BtgZI GCGATG 1 cut(s) 242
BtsCI GGATG 4 cut(s) 112, 164, 412, 811
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 2 cut(s) 21, 261
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 1 cut(s) 761
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 67
Csp6I GTAC 1 cut(s) 209
CviQI GTAC 1 cut(s) 209
DdeI CTNAG 3 cut(s) 591, 705, 927
DpnI GATC 4 cut(s) 41, 218, 495, 977
DpnII GATC 4 cut(s) 39, 216, 493, 975
DraI TTTAAA 1 cut(s) 901
DraIII CACNNNGTG 1 cut(s) 26
DriI GACNNNNNGTC 1 cut(s) 535
Eam1104I CTCTTC 2 cut(s) 345, 689
Eam1105I GACNNNNNGTC 1 cut(s) 535
EarI CTCTTC 2 cut(s) 345, 689
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 2 cut(s) 33, 948
Eco147I AGGCCT 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 839
Eco72I CACGTG 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 927
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 484
EcoT14I CCWWGG 2 cut(s) 33, 948
ErhI CCWWGG 2 cut(s) 33, 948
FaiI YATR 9 cut(s) 93, 297, 324, 401, 541, 632, 683, 736, 746
FaqI GGGAC 2 cut(s) 14, 952
FauI CCCGC 1 cut(s) 592
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 3 cut(s) 76, 588, 597
FokI GGATG 4 cut(s) 99, 151, 419, 818
Fsp4HI GCNGC 3 cut(s) 76, 588, 597
FspBI CTAG 1 cut(s) 330
GluI GCNGC 3 cut(s) 76, 588, 597
GsuI CTGGAG 2 cut(s) 285, 774
HaeIII GGCC 3 cut(s) 514, 893, 917
HgaI GACGC 1 cut(s) 67
HinfI GANTC 2 cut(s) 236, 722
HphI GGTGA 2 cut(s) 49, 199
Hpy166II GTNNAC 2 cut(s) 209, 788
Hpy188I TCNGA 2 cut(s) 819, 992
Hpy188III TCNNGA 3 cut(s) 116, 178, 545
Hpy8I GTNNAC 2 cut(s) 209, 788
HpyAV CCTTC 3 cut(s) 177, 694, 767
HpyCH4III ACNGT 4 cut(s) 10, 71, 253, 882
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 4 cut(s) 428, 763, 857, 867
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 72, 363, 593, 596, 854
HpyF3I CTNAG 3 cut(s) 591, 705, 927
HpySE526I ACGT 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 4 cut(s) 39, 216, 493, 975
LmnI GCTCC 2 cut(s) 266, 374
Lsp1109I GCAGC 3 cut(s) 87, 574, 583
LweI GCATC 3 cut(s) 397, 433, 574
MaeI CTAG 1 cut(s) 330
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 259
MalI GATC 4 cut(s) 41, 218, 495, 977
MboI GATC 4 cut(s) 39, 216, 493, 975
MboII GAAGA 3 cut(s) 362, 706, 832
MluCI AATT 4 cut(s) 52, 429, 518, 612
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 1 cut(s) 521
MnlI CCTC 9 cut(s) 304, 504, 668, 690, 749, 880, 883, 922, 928
MseI TTAA 4 cut(s) 51, 305, 648, 900
MspR9I CCNGG 1 cut(s) 486
Mva1269I GAATGC 2 cut(s) 417, 867
MvaI CCWGG 1 cut(s) 486
MwoI GCNNNNNNNGC 6 cut(s) 11, 72, 363, 593, 596, 854
NdeII GATC 4 cut(s) 39, 216, 493, 975
NlaIV GGNNCC 2 cut(s) 21, 243
NmuCI GTSAC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 514
PcsI WCGNNNNNNNCGW 1 cut(s) 79
PctI GAATGC 2 cut(s) 417, 867
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 3 cut(s) 77, 589, 598
PleI GAGTC 1 cut(s) 716
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
PpsI GAGTC 1 cut(s) 716
Ppu21I YACGTR 1 cut(s) 26
PshBI ATTAAT 2 cut(s) 51, 648
PsiI TTATAA 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 484
PspCI CACGTG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 484
PspN4I GGNNCC 2 cut(s) 21, 243
PspPI GGNCC 1 cut(s) 242
RsaI GTAC 1 cut(s) 210
RsaNI GTAC 1 cut(s) 209
SaqAI TTAA 4 cut(s) 51, 305, 648, 900
SatI GCNGC 3 cut(s) 76, 588, 597
Sau3AI GATC 4 cut(s) 39, 216, 493, 975
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 1 cut(s) 486
SetI ASST 9 cut(s) 28, 271, 427, 487, 508, 555, 668, 816, 850
SfaNI GCATC 3 cut(s) 397, 433, 574
SfcI CTRYAG 1 cut(s) 878
SinI GGWCC 1 cut(s) 242
Sse9I AATT 4 cut(s) 52, 429, 518, 612
SseBI AGGCCT 1 cut(s) 514
SsiI CCGC 3 cut(s) 233, 599, 777
SspI AATATT 1 cut(s) 49
SspMI CTAG 1 cut(s) 330
StuI AGGCCT 1 cut(s) 514
StyD4I CCNGG 1 cut(s) 484
StyI CCWWGG 2 cut(s) 33, 948
TaaI ACNGT 4 cut(s) 10, 71, 253, 882
TaiI ACGT 1 cut(s) 28
TaqI TCGA 3 cut(s) 125, 146, 885
TasI AATT 4 cut(s) 52, 429, 518, 612
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 4 cut(s) 51, 305, 648, 900
Tru9I TTAA 4 cut(s) 51, 305, 648, 900
TscAI CASTG 2 cut(s) 21, 268
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 3 cut(s) 75, 587, 596
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 4 cut(s) 128, 141, 153, 494
TspGWI ACGGA 3 cut(s) 71, 157, 773
TspRI CASTG 2 cut(s) 21, 268
VpaK11BI GGWCC 1 cut(s) 242
VspI ATTAAT 2 cut(s) 51, 648
XapI RAATTY 1 cut(s) 518
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.