Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0012954

Physical Location & Seq

Genomic Coordinates Forward (+)

8193902 .. 8196920

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13500.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCAACGGTGGCAGCTGCACCACGTGTCCAGCTGGTGATATCAGATAATAATTACAATAAGGTCCGTCAATGTCATAAATTGAGTTGGGTGGCAGTTCCAGAAAGGTCTAGTCTTTCTTCTTCTGAGAATCCGAGTTCATTGTTTTCTACTTCATCTTTATCTTTGAGCGTTGGAAAGAGGGTCAGCAAGGGTTTTAGGAGAGGAGTGGCTATAACGGCGATGGCGGATTCGGGTACAAGCACAGTCCTTGTTACTGGAGCTGGTGGTAGAACTGGCCAGATAGTTTATAAGAAGTTGAAGGAGAGGTCTGATCAGTATGTTGCTAGGGGTCTGGTTAGAACAGAAGAGAGCAAAGCCAAAATTGGTGGGGCAGATGATCTTTATGTTGGAGATATAACAGTTGCCGACAGCATTGTACCTGCAATCCAAGGTATCGATGCCCTCGTGATCCTTACAAGTGCTGTGCCAAAGATGAAACCTGGTTTTGATCCAAGTAAGGGTGAGAGGCCTGAGTTCTACTTTGAAGATGGGCAATTTCCTGAACAGGTTGATTGGCTTGGACAGAAAAATCAAATTGATGCTGCTAAGGCTGCTGGAGTGAAGCAAATTGTATTGGTTGGGTCTATGGGTGGAACTGATTTGAATAACCCCCTAAACAGTTTGGGTAATGGAAATATTTTGATTTGGAAGAGGAAGGCTGAGCAGTACTTGGCTGACTCTGGTATTCCGTACACAATCATAAGGGCTGGAGGCTTGCAAGACAAACAAGGTGGCATCCGTGAACTACTTATTGGGAAGGATGACGAACTTCTGAAGACAGAGACAAGAACCATTGCCAGGGCCGATGTCGCAGAAGTCTGCGTTCAGGCATTGCAATTTGAGGAGGCCAAAAACAAGGCATTTGATTTAGCCTCAAAGCCTGAGGGAACGGGAACACCTACCAAAGATTTCAAAGCTCTCTTCTCCCAAATCACCACTCATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAD_binding_10

Protein Analysis

330

Amino Acids

35.35

Weight (kDa)

8.86

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	80 - 248	7.3e-07	NmrA-like family
NAD_binding_10	PF13460	87 - 293	2.3e-33	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012954)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37660 AT5G02240
fragaria_vesca	FvH4_6g13500
malus_domestica	MD04G1130500.v1.1 MD12G1143700.v1.1
prunus_persica	Prupe.6G257200_v2.0.a1 Prupe.6G257200_v2.0.a1
pyrus_communis	pycom04g11880 pycom12g13840
rosa_chinensis	RchiOBHm_Chr3g0466371
rosa_laevigata	RLG00000024580
rosa_multiflora	Rmu_sc0003480.1_g000005
rosa_roxburghii	Rroxscaffold_6G00414530
rosa_rugosa	Rorug03G0081300
rosa_samantha	Rh3AG127800 Rh3BG149100 Rh3DG149800
rosa_wichuraiana	Rw3G012070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	291
Acc36I	ACCTGC	1 cut(s)	430
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	2 cut(s)	445, 485
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	836
AcvI	CACGTG	1 cut(s)	26
AdeI	CACNNNGTG	1 cut(s)	26
AfaI	GTAC	4 cut(s)	238, 420, 710, 734
AfiI	CCNNNNNNNGG	2 cut(s)	500, 840
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	4 cut(s)	301, 527, 646, 955
AjnI	CCWGG	2 cut(s)	481, 839
AjuI	GAANNNNNNNTTGG	2 cut(s)	777, 809
AluBI	AGCT	4 cut(s)	17, 34, 263, 959
AluI	AGCT	4 cut(s)	17, 34, 263, 959
Alw26I	GTCTC	1 cut(s)	818
AlwI	GGATC	2 cut(s)	445, 485
AoxI	GGCC	4 cut(s)	277, 509, 843, 888
ApeKI	GCWGC	4 cut(s)	14, 17, 584, 593
AspS9I	GGNCC	2 cut(s)	64, 843
AsuHPI	GGTGA	3 cut(s)	49, 515, 967
AvaII	GGWCC	1 cut(s)	64
AxyI	CCTNAGG	1 cut(s)	924
BalI	TGGCCA	1 cut(s)	279
BauI	CACGAG	1 cut(s)	446
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	824
BbvI	GCAGC	4 cut(s)	4, 26, 571, 580
BccI	CCATC	2 cut(s)	217, 524
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	483, 841
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	818
BfaI	CTAG	2 cut(s)	111, 327
BfuAI	ACCTGC	1 cut(s)	430
BisI	GCNGC	4 cut(s)	15, 18, 585, 594
BlpI	GCTNAGC	1 cut(s)	702
BlsI	GCNGC	4 cut(s)	16, 19, 586, 595
BmcAI	AGTACT	1 cut(s)	710
Bme1390I	CCNGG	2 cut(s)	483, 841
Bme18I	GGWCC	1 cut(s)	64
BmgT120I	GGNCC	2 cut(s)	64, 843
BmrFI	CCNGG	2 cut(s)	483, 841
BmsI	GCATC	3 cut(s)	430, 571, 786
BpiI	GAAGAC	1 cut(s)	824
BpmI	CTGGAG	3 cut(s)	279, 618, 771
Bpu10I	CCTNAGC	1 cut(s)	588
Bpu1102I	GCTNAGC	1 cut(s)	702
Bsa29I	ATCGAT	1 cut(s)	438
BsaAI	YACGTR	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	430, 840
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 840
Bse1I	ACTGG	2 cut(s)	262, 280
Bse21I	CCTNAGG	1 cut(s)	924
Bse3DI	GCAATG	2 cut(s)	834, 872
BseBI	CCWGG	2 cut(s)	483, 841
BseCI	ATCGAT	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	430, 840
BseGI	GGATG	2 cut(s)	777, 808
BseLI	CCNNNNNNNGG	2 cut(s)	500, 840
BseMI	GCAATG	2 cut(s)	834, 872
BseMII	CTCAG	4 cut(s)	117, 504, 693, 915
BseNI	ACTGG	2 cut(s)	262, 280
BseRI	GAGGAG	2 cut(s)	219, 899
BseXI	GCAGC	4 cut(s)	4, 26, 571, 580
BshFI	GGCC	4 cut(s)	279, 511, 845, 890
BshVI	ATCGAT	1 cut(s)	438
BslI	CCNNNNNNNGG	2 cut(s)	500, 840
BsmAI	GTCTC	1 cut(s)	818
BsnI	GGCC	4 cut(s)	279, 511, 845, 890
Bsp143I	GATC	4 cut(s)	313, 379, 450, 490
Bsp1720I	GCTNAGC	1 cut(s)	702
BspACI	CCGC	1 cut(s)	227
BspANI	GGCC	4 cut(s)	279, 511, 845, 890
BspCNI	CTCAG	4 cut(s)	118, 505, 694, 916
BspDI	ATCGAT	1 cut(s)	438
BspMI	ACCTGC	1 cut(s)	430
BspPI	GGATC	2 cut(s)	445, 485
BsrDI	GCAATG	2 cut(s)	834, 872
BsrI	ACTGG	2 cut(s)	262, 280
BssECI	CCNNGG	2 cut(s)	430, 840
BssMI	GATC	4 cut(s)	313, 379, 450, 490
BssSI	CACGAG	1 cut(s)	446
BssT1I	CCWWGG	1 cut(s)	430
Bst2BI	CACGAG	1 cut(s)	446
Bst2UI	CCWGG	2 cut(s)	483, 841
Bst4CI	ACNGT	4 cut(s)	10, 247, 403, 662
Bst6I	CTCTTC	3 cut(s)	342, 686, 968
BstBAI	YACGTR	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	758
BstDEI	CTNAG	5 cut(s)	126, 513, 588, 702, 924
BstF5I	GGATG	2 cut(s)	777, 808
BstKTI	GATC	4 cut(s)	316, 382, 453, 493
BstMAI	GTCTC	1 cut(s)	818
BstMBI	GATC	4 cut(s)	313, 379, 450, 490
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 218, 590, 593, 851
BstNI	CCWGG	2 cut(s)	483, 841
BstSCI	CCNGG	2 cut(s)	481, 839
BstV1I	GCAGC	4 cut(s)	4, 26, 571, 580
BstV2I	GAAGAC	1 cut(s)	824
Bsu15I	ATCGAT	1 cut(s)	438
Bsu36I	CCTNAGG	1 cut(s)	924
BsuRI	GGCC	4 cut(s)	279, 511, 845, 890
BsuTUI	ATCGAT	1 cut(s)	438
BtgZI	GCGATG	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	777, 808
BveI	ACCTGC	1 cut(s)	430
Cac8I	GCNNGC	1 cut(s)	758
Cfr13I	GGNCC	2 cut(s)	64, 843
ClaI	ATCGAT	1 cut(s)	438
CsiI	ACCWGGT	1 cut(s)	481
Csp6I	GTAC	4 cut(s)	237, 419, 709, 733
CspCI	CAANNNNNGTGG	4 cut(s)	349, 384, 754, 789
CviQI	GTAC	4 cut(s)	237, 419, 709, 733
DdeI	CTNAG	5 cut(s)	126, 513, 588, 702, 924
DpnI	GATC	4 cut(s)	315, 381, 452, 492
DpnII	GATC	4 cut(s)	313, 379, 450, 490
DraIII	CACNNNGTG	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	277
Eam1104I	CTCTTC	3 cut(s)	342, 686, 968
EarI	CTCTTC	3 cut(s)	342, 686, 968
EciI	GGCGGA	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	430
Eco147I	AGGCCT	1 cut(s)	511
Eco32I	GATATC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	64
Eco57I	CTGAAG	1 cut(s)	836
Eco72I	CACGTG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	924
EcoRII	CCWGG	2 cut(s)	481, 839
EcoRV	GATATC	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaiI	YATR	8 cut(s)	78, 215, 291, 321, 387, 398, 629, 743
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	15, 18, 585, 594
FokI	GGATG	2 cut(s)	764, 815
Fsp4HI	GCNGC	4 cut(s)	15, 18, 585, 594
FspBI	CTAG	2 cut(s)	111, 327
GluI	GCNGC	4 cut(s)	15, 18, 585, 594
GsuI	CTGGAG	3 cut(s)	279, 618, 771
HaeIII	GGCC	4 cut(s)	279, 511, 845, 890
HinfI	GANTC	3 cut(s)	130, 230, 719
HphI	GGTGA	3 cut(s)	49, 515, 967
Hpy166II	GTNNAC	2 cut(s)	735, 785
Hpy188I	TCNGA	5 cut(s)	46, 127, 135, 313, 816
Hpy188III	TCNNGA	3 cut(s)	101, 448, 542
Hpy8I	GTNNAC	2 cut(s)	735, 785
HpyAV	CCTTC	3 cut(s)	295, 691, 793
HpyCH4III	ACNGT	4 cut(s)	10, 247, 403, 662
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	20, 425, 760, 877
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 218, 590, 593, 851
HpyF3I	CTNAG	5 cut(s)	126, 513, 588, 702, 924
HpySE526I	ACGT	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	313, 379, 450, 490
LmnI	GCTCC	1 cut(s)	260
Lsp1109I	GCAGC	4 cut(s)	4, 26, 571, 580
LweI	GCATC	3 cut(s)	430, 571, 786
MabI	ACCWGGT	1 cut(s)	481
MaeI	CTAG	2 cut(s)	111, 327
MaeII	ACGT	1 cut(s)	25
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	4 cut(s)	315, 381, 452, 492
MboI	GATC	4 cut(s)	313, 379, 450, 490
MboII	GAAGA	7 cut(s)	111, 114, 359, 539, 703, 829, 955
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	7 cut(s)	52, 80, 363, 536, 576, 609, 878
MluNI	TGGCCA	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	713
MmeI	TCCRAC	2 cut(s)	154, 370
Mox20I	TGGCCA	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	279
Msp20I	TGGCCA	1 cut(s)	279
MspA1I	CMGCKG	2 cut(s)	17, 34
MspR9I	CCNGG	2 cut(s)	483, 841
MvaI	CCWGG	2 cut(s)	483, 841
MwoI	GCNNNNNNNGC	5 cut(s)	11, 218, 590, 593, 851
NdeII	GATC	4 cut(s)	313, 379, 450, 490
PceI	AGGCCT	1 cut(s)	511
PcsI	WCGNNNNNNNCGW	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	130, 230
PkrI	GCNGC	4 cut(s)	16, 19, 586, 595
PleI	GAGTC	1 cut(s)	713
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	713
Ppu21I	YACGTR	1 cut(s)	26
PsiI	TTATAA	1 cut(s)	291
Psp6I	CCWGG	2 cut(s)	481, 839
PspCI	CACGTG	1 cut(s)	26
PspGI	CCWGG	2 cut(s)	481, 839
PspPI	GGNCC	2 cut(s)	64, 843
PvuII	CAGCTG	2 cut(s)	17, 34
RsaI	GTAC	4 cut(s)	238, 420, 710, 734
RsaNI	GTAC	4 cut(s)	237, 419, 709, 733
SatI	GCNGC	4 cut(s)	15, 18, 585, 594
Sau3AI	GATC	4 cut(s)	313, 379, 450, 490
Sau96I	GGNCC	2 cut(s)	64, 843
ScaI	AGTACT	1 cut(s)	710
SchI	GAGTC	1 cut(s)	713
ScrFI	CCNGG	2 cut(s)	483, 841
SexAI	ACCWGGT	1 cut(s)	481
SfaNI	GCATC	3 cut(s)	430, 571, 786
SinI	GGWCC	1 cut(s)	64
Sse9I	AATT	7 cut(s)	52, 80, 363, 536, 576, 609, 878
SseBI	AGGCCT	1 cut(s)	511
SsiI	CCGC	1 cut(s)	227
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	2 cut(s)	111, 327
StuI	AGGCCT	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	481, 839
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	4 cut(s)	10, 247, 403, 662
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	438
TasI	AATT	7 cut(s)	52, 80, 363, 536, 576, 609, 878
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	2 cut(s)	130, 230
TseI	GCWGC	4 cut(s)	14, 17, 584, 593
TspDTI	ATGAA	3 cut(s)	129, 144, 491
TspGWI	ACGGA	3 cut(s)	56, 720, 770
VpaK11BI	GGWCC	1 cut(s)	64
XspI	CTAG	2 cut(s)	111, 327
ZrmI	AGTACT	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.