Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014100

Physical Location & Seq

Genomic Coordinates Reverse (-)

15921136 .. 15922321

Gene Structure 1186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGAAGAAATCGCCGATAAAACCTTCTTCCGATACTGTCTCCTCACTCTTATTTTCGCCGGCCCACCAACCGCCGTCCTTCTGAAATTCCTCCAAGCTCCTTACGGTAAACACAACCGTACCGGATGGGGTCCCACCGTATCTCCACCGATTGCTTGGTTCGTCATGGAGAGCCCAACCTTGTGGCTCACTCTCCTCCTCTTCCCCTTTGGTCGTCACGCTCTCAACCCTAAATCTCTACTTCTATTCTCTCCTTATCTCATTCATTACTTCCACCGCACCATCATTTACCCTCTTCGCCTCTTCCGCAGCTCCTTCCCCGCCGGTAAAAACGGATTTCCGATCACCATCGCCGCCTTGGCTTTCACCTTTAATCTCCTCAATGGTTATATCCAGGCGAGGTGGGTTTCGCATTACAAGGATGACTACGAAGACGGAAACTGGTTCTGGTGGCGGTTTGTTATCGGTATGGTGGTTTTCATAACCGGCATGTATATAAATATCACGTCGGACCGGACTTTGGTACGATTGAAGAAAGAGAACCGGGGAGGTTATGTGATACCGAGAGGAGGCTGGTTCGAGTTGGTAAGCTGTCCGAATTATTTTGGAGAGGCGATTGAGTGGTTGGGCTGGGCTGTTATGACTTGGTCTTGGGCCGGTATTGGATTTTTTCTGTACACGTGTTCCAATTTGTTTCCGCGTGCACGTGCGAGTCACAAGTGGTACATTGCCAAGTTCAAGGAAGAGTATCCCAAGACTCGTAAAGCTGTTATTCCTTTTGTGTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009917 GO:0010268 GO:0010817 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016229 GO:0016491 GO:0016627 GO:0016628 GO:0033765 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048878 GO:0050213 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

262

Amino Acids

30.63

Weight (kDa)

9.71

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	112 - 262	3e-62	3-oxo-5-alpha-steroid 4-dehydrogenase
DUF1295	PF06966	144 - 217	3.5e-07	Protein of unknown function (DUF1295)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38050
fragaria_vesca	FvH4_6g12130
malus_domestica	MD04G1146500.v1.1 MD12G1159700.v1.1
prunus_persica	Prupe.6G270300_v2.0.a1 Prupe.6G270300_v2.0.a1
pyrus_communis	pycom12g15140
rosa_chinensis	RchiOBHm_Chr3g0463931
rosa_laevigata	RLG00000024734
rosa_multiflora	Rmu_co8513843.1_g000001 Rmu_sc0006492.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416130
rosa_rugosa	Rorug03G0069400
rosa_samantha	Rh3BG130400 Rh3CG132800 Rh3DG131600
rosa_wichuraiana	Rw3G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	700
AciI	CCGC	7 cut(s)	72, 277, 307, 321, 354, 454, 698
AcsI	RAATTY	1 cut(s)	86
AcvI	CACGTG	2 cut(s)	681, 707
AfaI	GTAC	5 cut(s)	121, 525, 677, 725, 785
AfiI	CCNNNNNNNGG	2 cut(s)	520, 569
AflIII	ACRYGT	2 cut(s)	678, 680
AgsI	TTSAA	2 cut(s)	532, 739
AjiI	CACGTC	1 cut(s)	507
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	4 cut(s)	98, 312, 591, 767
AluI	AGCT	4 cut(s)	98, 312, 591, 767
Alw21I	GWGCWC	1 cut(s)	706
Alw26I	GTCTC	1 cut(s)	44
Alw44I	GTGCAC	1 cut(s)	702
AoxI	GGCC	2 cut(s)	61, 654
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	1 cut(s)	309
ApoI	RAATTY	1 cut(s)	86
AspS9I	GGNCC	4 cut(s)	62, 131, 511, 654
AsuC2I	CCSGG	1 cut(s)	545
AsuHPI	GGTGA	2 cut(s)	337, 358
AvaII	GGWCC	2 cut(s)	131, 511
BaeGI	GKGCMC	1 cut(s)	706
BaeI	ACNNNNGTAYC	2 cut(s)	103, 136
BanII	GRGCYC	1 cut(s)	176
BbrPI	CACGTG	2 cut(s)	681, 707
BbsI	GAAGAC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	706
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	3 cut(s)	120, 290, 356
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	759
BcnI	CCSGG	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	759
BglI	GCCNNNNNGGC	1 cut(s)	359
BisI	GCNGC	2 cut(s)	310, 354
BlsI	GCNGC	2 cut(s)	311, 355
Bme1390I	CCNGG	2 cut(s)	395, 545
Bme18I	GGWCC	2 cut(s)	131, 511
BmgBI	CACGTC	1 cut(s)	507
BmgT120I	GGNCC	4 cut(s)	62, 131, 511, 654
BmiI	GGNNCC	2 cut(s)	132, 133
BmrFI	CCNGG	2 cut(s)	395, 545
BpiI	GAAGAC	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	545
BsaAI	YACGTR	2 cut(s)	681, 707
BsaBI	GATNNNNATC	1 cut(s)	347
BsaJI	CCNNGG	2 cut(s)	357, 544
BsaWI	WCCGGW	2 cut(s)	122, 513
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 540, 570
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 569
Bse118I	RCCGGY	4 cut(s)	59, 323, 485, 656
Bse1I	ACTGG	1 cut(s)	446
Bse3DI	GCAATG	1 cut(s)	726
Bse8I	GATNNNNATC	1 cut(s)	347
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	357, 544
BseGI	GGATG	2 cut(s)	131, 427
BseJI	GATNNNNATC	1 cut(s)	347
BseLI	CCNNNNNNNGG	2 cut(s)	520, 569
BseMI	GCAATG	1 cut(s)	726
BseNI	ACTGG	1 cut(s)	446
BseRI	GAGGAG	5 cut(s)	32, 185, 188, 368, 582
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	1 cut(s)	321
BseYI	CCCAGC	1 cut(s)	630
Bsh1236I	CGCG	1 cut(s)	700
BshFI	GGCC	2 cut(s)	63, 656
BsiHKAI	GWGCWC	1 cut(s)	706
BsiSI	CCGG	7 cut(s)	60, 123, 324, 486, 514, 544, 657
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	520, 569
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	63, 656
Bsp1286I	GDGCHC	2 cut(s)	176, 706
Bsp1407I	TGTACA	1 cut(s)	675
Bsp143I	GATC	1 cut(s)	342
BspACI	CCGC	7 cut(s)	72, 277, 307, 321, 354, 454, 698
BspANI	GGCC	2 cut(s)	63, 656
BspFNI	CGCG	1 cut(s)	700
BspLI	GGNNCC	2 cut(s)	132, 133
BsrDI	GCAATG	1 cut(s)	726
BsrFI	RCCGGY	4 cut(s)	59, 323, 485, 656
BsrGI	TGTACA	1 cut(s)	675
BsrI	ACTGG	1 cut(s)	446
BssAI	RCCGGY	4 cut(s)	59, 323, 485, 656
BssECI	CCNNGG	2 cut(s)	357, 544
BssMI	GATC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	4 cut(s)	38, 107, 119, 139
Bst6I	CTCTTC	4 cut(s)	206, 300, 308, 738
BstAUI	TGTACA	1 cut(s)	675
BstBAI	YACGTR	2 cut(s)	681, 707
BstC8I	GCNNGC	2 cut(s)	61, 702
BstF5I	GGATG	2 cut(s)	131, 427
BstFNI	CGCG	1 cut(s)	700
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	306, 359
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	393, 543
BstSLI	GKGCMC	1 cut(s)	706
BstUI	CGCG	1 cut(s)	700
BstV1I	GCAGC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	438
BstXI	CCANNNNNNTGG	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	63, 656
BtgZI	GCGATG	1 cut(s)	334
BtrI	CACGTC	1 cut(s)	507
BtsCI	GGATG	2 cut(s)	131, 427
Cac8I	GCNNGC	2 cut(s)	61, 702
Cfr10I	RCCGGY	4 cut(s)	59, 323, 485, 656
Cfr13I	GGNCC	4 cut(s)	62, 131, 511, 654
CpoI	CGGWCCG	1 cut(s)	511
Csp6I	GTAC	5 cut(s)	120, 524, 676, 724, 784
CspI	CGGWCCG	1 cut(s)	511
CviAII	CATG	2 cut(s)	166, 490
CviQI	GTAC	5 cut(s)	120, 524, 676, 724, 784
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
Eam1104I	CTCTTC	4 cut(s)	206, 300, 308, 738
EarI	CTCTTC	4 cut(s)	206, 300, 308, 738
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	176
Eco47I	GGWCC	2 cut(s)	131, 511
Eco72I	CACGTG	2 cut(s)	681, 707
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	176
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	2 cut(s)	169, 493
FaiI	YATR	9 cut(s)	167, 390, 470, 482, 491, 495, 497, 555, 641
FaqI	GGGAC	1 cut(s)	117
FatI	CATG	2 cut(s)	165, 489
FauI	CCCGC	1 cut(s)	328
Fnu4HI	GCNGC	2 cut(s)	310, 354
FokI	GGATG	2 cut(s)	138, 434
FriOI	GRGCYC	1 cut(s)	176
Fsp4HI	GCNGC	2 cut(s)	310, 354
GluI	GCNGC	2 cut(s)	310, 354
GsaI	CCCAGC	1 cut(s)	634
HaeIII	GGCC	2 cut(s)	63, 656
HapII	CCGG	7 cut(s)	60, 123, 324, 486, 514, 544, 657
Hin1II	CATG	2 cut(s)	169, 493
HinfI	GANTC	2 cut(s)	712, 757
HpaII	CCGG	7 cut(s)	60, 123, 324, 486, 514, 544, 657
HphI	GGTGA	2 cut(s)	337, 358
Hpy166II	GTNNAC	4 cut(s)	110, 678, 704, 784
Hpy188I	TCNGA	5 cut(s)	32, 84, 342, 511, 597
Hpy8I	GTNNAC	4 cut(s)	110, 678, 704, 784
Hpy99I	CGWCG	1 cut(s)	511
HpyAV	CCTTC	3 cut(s)	34, 89, 325
HpyCH4III	ACNGT	4 cut(s)	38, 107, 119, 139
HpyCH4IV	ACGT	3 cut(s)	506, 680, 706
HpyCH4V	TGCA	1 cut(s)	704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	306, 359
HpySE526I	ACGT	3 cut(s)	506, 680, 706
Hsp92II	CATG	2 cut(s)	169, 493
KflI	GGGWCCC	1 cut(s)	131
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	2 cut(s)	103, 317
Lsp1109I	GCAGC	1 cut(s)	321
MaeII	ACGT	3 cut(s)	506, 680, 706
MaeIII	GTNAC	2 cut(s)	215, 713
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	8 cut(s)	17, 19, 193, 287, 295, 443, 544, 755
MhlI	GDGCHC	2 cut(s)	176, 706
MluCI	AATT	3 cut(s)	86, 598, 688
MlyI	GAGTC	2 cut(s)	721, 751
MmeI	TCCRAC	1 cut(s)	489
MroNI	GCCGGC	1 cut(s)	59
MseI	TTAA	1 cut(s)	372
MspI	CCGG	7 cut(s)	60, 123, 324, 486, 514, 544, 657
MspR9I	CCNGG	2 cut(s)	395, 545
MvaI	CCWGG	1 cut(s)	395
MvnI	CGCG	1 cut(s)	700
MwoI	GCNNNNNNNGC	2 cut(s)	306, 359
NaeI	GCCGGC	1 cut(s)	61
NciI	CCSGG	1 cut(s)	545
NdeII	GATC	1 cut(s)	342
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	2 cut(s)	169, 493
NlaIV	GGNNCC	2 cut(s)	132, 133
NmuCI	GTSAC	2 cut(s)	215, 713
NspI	RCATGY	1 cut(s)	493
PdiI	GCCGGC	1 cut(s)	61
PflFI	GACNNNGTC	1 cut(s)	646
PkrI	GCNGC	2 cut(s)	311, 355
PleI	GAGTC	2 cut(s)	720, 751
PmaCI	CACGTG	2 cut(s)	681, 707
PmlI	CACGTG	2 cut(s)	681, 707
PpsI	GAGTC	2 cut(s)	720, 751
Ppu21I	YACGTR	2 cut(s)	681, 707
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	393
PspCI	CACGTG	2 cut(s)	681, 707
PspFI	CCCAGC	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	132, 133
PspPI	GGNCC	4 cut(s)	62, 131, 511, 654
PspPPI	RGGWCCY	1 cut(s)	131
PsyI	GACNNNGTC	1 cut(s)	646
RsaI	GTAC	5 cut(s)	121, 525, 677, 725, 785
RsaNI	GTAC	5 cut(s)	120, 524, 676, 724, 784
Rsr2I	CGGWCCG	1 cut(s)	511
RsrII	CGGWCCG	1 cut(s)	511
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	2 cut(s)	310, 354
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	4 cut(s)	62, 131, 511, 654
SchI	GAGTC	2 cut(s)	721, 751
ScrFI	CCNGG	2 cut(s)	395, 545
SduI	GDGCHC	2 cut(s)	176, 706
SinI	GGWCC	2 cut(s)	131, 511
Sse9I	AATT	3 cut(s)	86, 598, 688
SsiI	CCGC	7 cut(s)	72, 277, 307, 321, 354, 454, 698
StyD4I	CCNGG	2 cut(s)	393, 543
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	38, 107, 119, 139
TaiI	ACGT	3 cut(s)	509, 683, 709
TaqI	TCGA	1 cut(s)	579
TasI	AATT	3 cut(s)	86, 598, 688
TatI	WGTACW	2 cut(s)	675, 783
TauI	GCSGC	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TseFI	GTSAC	2 cut(s)	215, 713
TseI	GCWGC	1 cut(s)	309
Tsp45I	GTSAC	2 cut(s)	215, 713
TspDTI	ATGAA	2 cut(s)	254, 469
TspGWI	ACGGA	2 cut(s)	348, 450
Tth111I	GACNNNGTC	1 cut(s)	646
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	2 cut(s)	131, 511
XapI	RAATTY	1 cut(s)	86
XceI	RCATGY	1 cut(s)	493
XcmI	CCANNNNNNNNNTGG	2 cut(s)	153, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.