Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014100

Physical Location & Seq

Genomic Coordinates Reverse (-)

25659295 .. 25660855

Gene Structure 1561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G270300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCCTCAGATCAGAACTTCTTCCACAACTGCCTCCTCAGCCTCTACCTCATAGCACCGCCAACCTACATCTCCCTCAGGTTCCTCCAGGCCCCCTATGGCAAGCACCGCCGCCCAGGTTGGGGCCCCACCATGTCCCCTCCCTTGGCCTGGTTCCTCATGGAAAGCCCAACTCTTTGGCTCACCCTCCTCCTCTTCCCCTCCGGCCTCCACTCTTCCAACCCAAAAGCCCTTTTTCTCATCGTACCCTTTCTCTTCCACTACTTCCACCGCACCTTCCTCTACCCGCTCCGCCTCTGCCGGAATACCACCAATCCCAAAACATCAGGCGGTTTTCCGGTGAGCGTGGCGCTCATGGCATTTGGGTTCAATCTGTTGAATGCCTACTTGCAGGCCAGATGGGTTTCTCAGTACAAAGATTATGAGGCTGATGGGTGGTTTTGGTGGAGATTCTGTGTTGGGTTGGTGGTGTTTGGTTATGGCATGGCTGTGAATATCTGGTCTGATAGGGTCTTGGTGGGATTGAAGAAAGAGGGGAAGGGGTACAAGGTGCCAAAAGGGGGTTGGTTTGAGTTGGTGAGCTGCCCAAACTACTATGGGGAGATAGTGGAGTGGTTGGGATGGGCAGTGATGACGTGGTCCTGGGCTGGGCTAGGGTTTTTCCTCTACACGTGTGCCAACTTGGTGCCCAGGGCACGTGCGAACCATAAGTGGTATTTGGAGAAATTTGGGGAGGATTATCCCAGGGGCAGAAAAGCTGTCATCCCCTTCTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009917 GO:0010268 GO:0010817 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016229 GO:0016491 GO:0016627 GO:0016628 GO:0033765 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048878 GO:0050213 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

260

Amino Acids

30.05

Weight (kDa)

9.53

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38050
fragaria_vesca	FvH4_6g12130
malus_domestica	MD04G1146500.v1.1 MD12G1159700.v1.1
prunus_persica	Prupe.6G270300_v2.0.a1 Prupe.6G270300_v2.0.a1
pyrus_communis	pycom12g15140
rosa_chinensis	RchiOBHm_Chr3g0463931
rosa_laevigata	RLG00000024734
rosa_multiflora	Rmu_co8513843.1_g000001 Rmu_sc0006492.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416130
rosa_rugosa	Rorug03G0069400
rosa_samantha	Rh3BG130400 Rh3CG132800 Rh3DG131600
rosa_wichuraiana	Rw3G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	550, 685
AccBSI	CCGCTC	1 cut(s)	289
AciI	CCGC	7 cut(s)	59, 109, 112, 271, 287, 292, 330
AcsI	RAATTY	1 cut(s)	725
AcvI	CACGTG	2 cut(s)	672, 698
AfaI	GTAC	3 cut(s)	246, 413, 545
AfiI	CCNNNNNNNGG	6 cut(s)	121, 122, 145, 150, 560, 648
AflIII	ACRYGT	2 cut(s)	669, 671
AgsI	TTSAA	3 cut(s)	370, 379, 526
AjiI	CACGTC	1 cut(s)	636
AjnI	CCWGG	6 cut(s)	87, 115, 149, 641, 689, 743
AluBI	AGCT	2 cut(s)	582, 758
AluI	AGCT	2 cut(s)	582, 758
AoxI	GGCC	6 cut(s)	3, 90, 124, 147, 205, 393
ApaI	GGGCCC	1 cut(s)	128
ApeKI	GCWGC	1 cut(s)	582
ApoI	RAATTY	1 cut(s)	725
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	352
AspS9I	GGNCC	4 cut(s)	91, 124, 125, 639
AsuHPI	GGTGA	3 cut(s)	175, 352, 589
AvaII	GGWCC	1 cut(s)	639
AxyI	CCTNAGG	1 cut(s)	77
BaeGI	GKGCMC	3 cut(s)	128, 690, 697
BanI	GGYRCC	2 cut(s)	550, 685
BanII	GRGCYC	1 cut(s)	128
BbrPI	CACGTG	2 cut(s)	672, 698
BbvCI	CCTCAGC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	569
BccI	CCATC	3 cut(s)	393, 425, 615
BciT130I	CCWGG	6 cut(s)	89, 117, 151, 643, 691, 745
BfaI	CTAG	1 cut(s)	653
BfoI	RGCGCY	1 cut(s)	353
BisI	GCNGC	2 cut(s)	112, 583
BlsI	GCNGC	2 cut(s)	113, 584
Bme1390I	CCNGG	6 cut(s)	89, 117, 151, 643, 691, 745
Bme18I	GGWCC	1 cut(s)	639
BmgBI	CACGTC	1 cut(s)	636
BmgT120I	GGNCC	4 cut(s)	91, 124, 125, 639
BmiI	GGNNCC	8 cut(s)	83, 93, 125, 126, 127, 155, 552, 687
BmrFI	CCNGG	6 cut(s)	89, 117, 151, 643, 691, 745
BpmI	CTGGAG	1 cut(s)	71
Bpu10I	CCTNAGC	1 cut(s)	38
BsaAI	YACGTR	2 cut(s)	672, 698
BsaJI	CCNNGG	7 cut(s)	115, 144, 642, 689, 690, 743, 744
BsaWI	WCCGGW	1 cut(s)	337
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	6 cut(s)	121, 122, 145, 150, 560, 648
Bse21I	CCTNAGG	1 cut(s)	77
BseBI	CCWGG	6 cut(s)	89, 117, 151, 643, 691, 745
BseDI	CCNNGG	7 cut(s)	115, 144, 642, 689, 690, 743, 744
BseGI	GGATG	2 cut(s)	626, 762
BseLI	CCNNNNNNNGG	6 cut(s)	121, 122, 145, 150, 560, 648
BseMII	CTCAG	4 cut(s)	21, 52, 91, 422
BseRI	GAGGAG	3 cut(s)	26, 179, 182
BseSI	GKGCMC	3 cut(s)	128, 690, 697
BseXI	GCAGC	1 cut(s)	569
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	6 cut(s)	5, 92, 126, 149, 207, 395
BshNI	GGYRCC	2 cut(s)	550, 685
BsiSI	CCGG	3 cut(s)	204, 301, 338
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	6 cut(s)	121, 122, 145, 150, 560, 648
BsmFI	GGGAC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	6 cut(s)	5, 92, 126, 149, 207, 395
Bsp120I	GGGCCC	1 cut(s)	124
Bsp1286I	GDGCHC	3 cut(s)	128, 690, 697
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	7 cut(s)	59, 109, 112, 271, 287, 292, 330
BspANI	GGCC	6 cut(s)	5, 92, 126, 149, 207, 395
BspCNI	CTCAG	4 cut(s)	20, 51, 90, 421
BspLI	GGNNCC	8 cut(s)	83, 93, 125, 126, 127, 155, 552, 687
BspT107I	GGYRCC	2 cut(s)	550, 685
BsrBI	CCGCTC	1 cut(s)	289
BssECI	CCNNGG	7 cut(s)	115, 144, 642, 689, 690, 743, 744
BssMI	GATC	1 cut(s)	10
BssT1I	CCWWGG	1 cut(s)	144
Bst2UI	CCWGG	6 cut(s)	89, 117, 151, 643, 691, 745
Bst6I	CTCTTC	3 cut(s)	200, 220, 260
BstBAI	YACGTR	2 cut(s)	672, 698
BstC8I	GCNNGC	2 cut(s)	104, 393
BstDEI	CTNAG	4 cut(s)	7, 38, 77, 408
BstF5I	GGATG	2 cut(s)	626, 762
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	1 cut(s)	352
BstKTI	GATC	1 cut(s)	13
BstMBI	GATC	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	39, 108, 356
BstNI	CCWGG	6 cut(s)	89, 117, 151, 643, 691, 745
BstSCI	CCNGG	6 cut(s)	87, 115, 149, 641, 689, 743
BstSLI	GKGCMC	3 cut(s)	128, 690, 697
BstV1I	GCAGC	1 cut(s)	569
BstXI	CCANNNNNNTGG	1 cut(s)	177
Bsu36I	CCTNAGG	1 cut(s)	77
BsuRI	GGCC	6 cut(s)	5, 92, 126, 149, 207, 395
BtrI	CACGTC	1 cut(s)	636
BtsCI	GGATG	2 cut(s)	626, 762
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	1 cut(s)	633
Cac8I	GCNNGC	2 cut(s)	104, 393
CfoI	GCGC	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	91, 124, 125, 639
Csp6I	GTAC	3 cut(s)	245, 412, 544
CviAII	CATG	4 cut(s)	133, 160, 355, 484
CviQI	GTAC	3 cut(s)	245, 412, 544
DdeI	CTNAG	4 cut(s)	7, 38, 77, 408
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	3 cut(s)	200, 220, 260
EarI	CTCTTC	3 cut(s)	200, 220, 260
EciI	GGCGGA	1 cut(s)	281
Eco130I	CCWWGG	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	128
Eco47I	GGWCC	1 cut(s)	639
Eco72I	CACGTG	2 cut(s)	672, 698
Eco81I	CCTNAGG	1 cut(s)	77
EcoO109I	RGGNCCY	3 cut(s)	91, 124, 125
EcoRII	CCWGG	6 cut(s)	87, 115, 149, 641, 689, 743
EcoT14I	CCWWGG	1 cut(s)	144
EcoT38I	GRGCYC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	144
FaeI	CATG	4 cut(s)	136, 163, 358, 487
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	4 cut(s)	132, 159, 354, 483
FauI	CCCGC	1 cut(s)	294
Fnu4HI	GCNGC	2 cut(s)	112, 583
FokI	GGATG	2 cut(s)	633, 749
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	2 cut(s)	112, 583
FspBI	CTAG	1 cut(s)	653
GlaI	GCGC	1 cut(s)	351
GluI	GCNGC	2 cut(s)	112, 583
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	6 cut(s)	5, 92, 126, 149, 207, 395
HapII	CCGG	3 cut(s)	204, 301, 338
HhaI	GCGC	1 cut(s)	352
Hin1II	CATG	4 cut(s)	136, 163, 358, 487
Hin6I	GCGC	1 cut(s)	350
HinP1I	GCGC	1 cut(s)	350
HinfI	GANTC	1 cut(s)	450
HpaII	CCGG	3 cut(s)	204, 301, 338
HphI	GGTGA	3 cut(s)	175, 352, 589
Hpy188I	TCNGA	3 cut(s)	10, 15, 505
HpyAV	CCTTC	3 cut(s)	286, 532, 778
HpyCH4IV	ACGT	3 cut(s)	635, 671, 697
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	3 cut(s)	39, 108, 356
HpyF3I	CTNAG	4 cut(s)	7, 38, 77, 408
HpySE526I	ACGT	3 cut(s)	635, 671, 697
Hsp92II	CATG	4 cut(s)	136, 163, 358, 487
HspAI	GCGC	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	1 cut(s)	569
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	3 cut(s)	635, 671, 697
MalI	GATC	1 cut(s)	12
MbiI	CCGCTC	1 cut(s)	289
MboI	GATC	1 cut(s)	10
MboII	GAAGA	5 cut(s)	13, 187, 207, 247, 538
MhlI	GDGCHC	3 cut(s)	128, 690, 697
MluCI	AATT	1 cut(s)	725
MmeI	TCCRAC	1 cut(s)	243
MroXI	GAANNNNTTC	1 cut(s)	20
MslI	CAYNNNNRTG	1 cut(s)	488
MspI	CCGG	3 cut(s)	204, 301, 338
MspR9I	CCNGG	6 cut(s)	89, 117, 151, 643, 691, 745
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	6 cut(s)	89, 117, 151, 643, 691, 745
MwoI	GCNNNNNNNGC	3 cut(s)	39, 108, 356
NdeII	GATC	1 cut(s)	10
NlaIII	CATG	4 cut(s)	136, 163, 358, 487
NlaIV	GGNNCC	8 cut(s)	83, 93, 125, 126, 127, 155, 552, 687
PasI	CCCWGGG	2 cut(s)	690, 744
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	450
PflFI	GACNNNGTC	1 cut(s)	637
PkrI	GCNGC	2 cut(s)	113, 584
PmaCI	CACGTG	2 cut(s)	672, 698
PmlI	CACGTG	2 cut(s)	672, 698
Ppu21I	YACGTR	2 cut(s)	672, 698
Psp6I	CCWGG	6 cut(s)	87, 115, 149, 641, 689, 743
PspCI	CACGTG	2 cut(s)	672, 698
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	6 cut(s)	87, 115, 149, 641, 689, 743
PspN4I	GGNNCC	8 cut(s)	83, 93, 125, 126, 127, 155, 552, 687
PspOMI	GGGCCC	1 cut(s)	124
PspPI	GGNCC	4 cut(s)	91, 124, 125, 639
PsyI	GACNNNGTC	1 cut(s)	637
RsaI	GTAC	3 cut(s)	246, 413, 545
RsaNI	GTAC	3 cut(s)	245, 412, 544
RseI	CAYNNNNRTG	1 cut(s)	488
SatI	GCNGC	2 cut(s)	112, 583
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	4 cut(s)	91, 124, 125, 639
ScrFI	CCNGG	6 cut(s)	89, 117, 151, 643, 691, 745
SduI	GDGCHC	3 cut(s)	128, 690, 697
SinI	GGWCC	1 cut(s)	639
SmiMI	CAYNNNNRTG	1 cut(s)	488
Sse9I	AATT	1 cut(s)	725
SsiI	CCGC	7 cut(s)	59, 109, 112, 271, 287, 292, 330
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	6 cut(s)	87, 115, 149, 641, 689, 743
StyI	CCWWGG	1 cut(s)	144
TaiI	ACGT	3 cut(s)	638, 674, 700
TasI	AATT	1 cut(s)	725
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	450
TscAI	CASTG	1 cut(s)	633
TseI	GCWGC	1 cut(s)	582
TspRI	CASTG	1 cut(s)	633
Tth111I	GACNNNGTC	1 cut(s)	637
VpaK11BI	GGWCC	1 cut(s)	639
XapI	RAATTY	1 cut(s)	725
XcmI	CCANNNNNNNNNTGG	2 cut(s)	95, 561
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.