Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006492.1

Orthogroup ID

OG0014100

Physical Location & Seq

Genomic Coordinates Forward (+)

9792 .. 10574

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006492.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

atggcctcatcggatcagaccttcttcaacaactccctcctagctctctacctcataggccctcccacattcatctccctcagattcctccaagccccatatggcaagcacaaccgtccagggtggggccccaccatgtctccgccgctggcttggttcctcatggaatcaccaacccttgggctcactctactcctcttcccctatggccaacacagttccaacccccaagccttaattctaatgaccccctttcttttccactatttcaaccgaacctgcctctacccacttcgcctctaccggaataccacccggaaaaccacccccggttttccggtcagcgtggcgtcgatggcatttgtgttcaatctgttgaatgcttatttgcaatccagatgggtgtctcactacaaggactatgagagtgaaaatgggtggttttggtgtaggttttttgttgggttggttgtgtttttgtgtgggatgggtgtgaatgtgtggtctgatagggttttagtgggtttgaaaacagagggtggagggtataagatccccaaaggggggtggtttgtgttggtgagctgccctaactactttggggaaatagtggagtggattggatgggcagtgatgacttggtcattagcaggactagggtttatgctatacacgtgtgccaatttggtgcccagggcacgtgcgaaccataggtggtatttggagaagtttgggaaggactatcccaagtccagaaaagctgttatccctttcttgtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009917 GO:0010268 GO:0010817 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016229 GO:0016491 GO:0016627 GO:0016628 GO:0033765 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048878 GO:0050213 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

260

Amino Acids

29.86

Weight (kDa)

9.59

Isoelectric Point (pI)

44.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38050
fragaria_vesca	FvH4_6g12130
malus_domestica	MD04G1146500.v1.1 MD12G1159700.v1.1
prunus_persica	Prupe.6G270300_v2.0.a1 Prupe.6G270300_v2.0.a1
pyrus_communis	pycom12g15140
rosa_chinensis	RchiOBHm_Chr3g0463931
rosa_laevigata	RLG00000024734
rosa_multiflora	Rmu_co8513843.1_g000001 Rmu_sc0006492.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416130
rosa_rugosa	Rorug03G0069400
rosa_samantha	Rh3BG130400 Rh3CG132800 Rh3DG131600
rosa_wichuraiana	Rw3G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	688
AccB7I	CCANNNNNTGG	1 cut(s)	179
AciI	CCGC	2 cut(s)	143, 146
AclWI	GGATC	2 cut(s)	21, 547
AcoI	YGGCCR	1 cut(s)	208
AcvI	CACGTG	2 cut(s)	675, 701
AcyI	GRCGYC	1 cut(s)	350
AfiI	CCNNNNNNNGG	5 cut(s)	125, 179, 562, 563, 564
AflIII	ACRYGT	2 cut(s)	672, 674
AgsI	TTSAA	5 cut(s)	28, 271, 370, 379, 529
AjnI	CCWGG	2 cut(s)	118, 692
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	3 cut(s)	44, 585, 761
AluI	AGCT	3 cut(s)	44, 585, 761
Alw26I	GTCTC	2 cut(s)	144, 411
AlwI	GGATC	2 cut(s)	21, 547
AoxI	GGCC	4 cut(s)	3, 58, 127, 208
ApaI	GGGCCC	1 cut(s)	131
ApeKI	GCWGC	1 cut(s)	585
AspS9I	GGNCC	3 cut(s)	59, 127, 128
AsuC2I	CCSGG	2 cut(s)	316, 330
AsuHPI	GGTGA	2 cut(s)	162, 592
BaeGI	GKGCMC	3 cut(s)	131, 693, 700
BalI	TGGCCA	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	688
BanII	GRGCYC	2 cut(s)	131, 186
BbrPI	CACGTG	2 cut(s)	675, 701
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	4 cut(s)	349, 393, 481, 618
BciT130I	CCWGG	2 cut(s)	120, 694
BcnI	CCSGG	2 cut(s)	316, 330
BcoDI	GTCTC	2 cut(s)	144, 411
BfaI	CTAG	2 cut(s)	41, 656
BfuAI	ACCTGC	1 cut(s)	287
BisI	GCNGC	2 cut(s)	146, 586
BlsI	GCNGC	2 cut(s)	147, 587
Bme1390I	CCNGG	4 cut(s)	120, 316, 330, 694
BmgT120I	GGNCC	3 cut(s)	59, 127, 128
BmiI	GGNNCC	5 cut(s)	128, 129, 130, 158, 690
BmrFI	CCNGG	4 cut(s)	120, 316, 330, 694
BpuMI	CCSGG	2 cut(s)	316, 330
BsaAI	YACGTR	2 cut(s)	675, 701
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	5 cut(s)	119, 178, 328, 692, 693
BsaWI	WCCGGW	2 cut(s)	303, 337
BsaXI	ACNNNNNCTCC	2 cut(s)	124, 154
Bsc4I	CCNNNNNNNGG	5 cut(s)	125, 179, 562, 563, 564
BseBI	CCWGG	2 cut(s)	120, 694
BseDI	CCNNGG	5 cut(s)	119, 178, 328, 692, 693
BseGI	GGATG	2 cut(s)	492, 629
BseLI	CCNNNNNNNGG	5 cut(s)	125, 179, 562, 563, 564
BseMII	CTCAG	1 cut(s)	94
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	3 cut(s)	131, 693, 700
BseXI	GCAGC	1 cut(s)	572
BshFI	GGCC	4 cut(s)	5, 60, 129, 210
BshNI	GGYRCC	1 cut(s)	688
BsiSI	CCGG	4 cut(s)	304, 316, 330, 338
BslI	CCNNNNNNNGG	5 cut(s)	125, 179, 562, 563, 564
BsmAI	GTCTC	2 cut(s)	144, 411
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	5, 60, 129, 210
Bsp120I	GGGCCC	1 cut(s)	127
Bsp1286I	GDGCHC	4 cut(s)	131, 186, 693, 700
Bsp143I	GATC	2 cut(s)	13, 552
BspACI	CCGC	2 cut(s)	143, 146
BspANI	GGCC	4 cut(s)	5, 60, 129, 210
BspCNI	CTCAG	1 cut(s)	93
BspLI	GGNNCC	5 cut(s)	128, 129, 130, 158, 690
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	2 cut(s)	21, 547
BspT107I	GGYRCC	1 cut(s)	688
BssECI	CCNNGG	5 cut(s)	119, 178, 328, 692, 693
BssMI	GATC	2 cut(s)	13, 552
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	2 cut(s)	120, 694
Bst4CI	ACNGT	2 cut(s)	116, 218
Bst6I	CTCTTC	1 cut(s)	203
BstACI	GRCGYC	1 cut(s)	350
BstBAI	YACGTR	2 cut(s)	675, 701
BstC8I	GCNNGC	2 cut(s)	107, 150
BstDEI	CTNAG	1 cut(s)	80
BstF5I	GGATG	2 cut(s)	492, 629
BstKTI	GATC	2 cut(s)	16, 555
BstMAI	GTCTC	2 cut(s)	144, 411
BstMBI	GATC	2 cut(s)	13, 552
BstMWI	GCNNNNNNNGC	1 cut(s)	356
BstNI	CCWGG	2 cut(s)	120, 694
BstSCI	CCNGG	4 cut(s)	118, 314, 328, 692
BstSLI	GKGCMC	3 cut(s)	131, 693, 700
BstV1I	GCAGC	1 cut(s)	572
BstX2I	RGATCY	1 cut(s)	552
BstYI	RGATCY	1 cut(s)	552
BsuRI	GGCC	4 cut(s)	5, 60, 129, 210
BtsCI	GGATG	2 cut(s)	492, 629
BtsI	GCAGTG	1 cut(s)	636
BtsIMutI	CAGTG	1 cut(s)	636
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	2 cut(s)	107, 150
Cfr13I	GGNCC	3 cut(s)	59, 127, 128
CseI	GACGC	1 cut(s)	339
CviAII	CATG	2 cut(s)	136, 163
DdeI	CTNAG	1 cut(s)	80
DpnI	GATC	2 cut(s)	15, 554
DpnII	GATC	2 cut(s)	13, 552
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	203
EarI	CTCTTC	1 cut(s)	203
EciI	GGCGGA	1 cut(s)	132
Eco130I	CCWWGG	1 cut(s)	178
Eco24I	GRGCYC	2 cut(s)	131, 186
Eco72I	CACGTG	2 cut(s)	675, 701
EcoO109I	RGGNCCY	3 cut(s)	59, 127, 128
EcoRII	CCWGG	2 cut(s)	118, 692
EcoT14I	CCWWGG	1 cut(s)	178
EcoT38I	GRGCYC	2 cut(s)	131, 186
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	2 cut(s)	139, 166
FatI	CATG	2 cut(s)	135, 162
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	146, 586
FokI	GGATG	2 cut(s)	499, 636
FriOI	GRGCYC	2 cut(s)	131, 186
Fsp4HI	GCNGC	2 cut(s)	146, 586
FspBI	CTAG	2 cut(s)	41, 656
GluI	GCNGC	2 cut(s)	146, 586
HaeIII	GGCC	4 cut(s)	5, 60, 129, 210
HapII	CCGG	4 cut(s)	304, 316, 330, 338
HgaI	GACGC	1 cut(s)	339
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	2 cut(s)	139, 166
HinfI	GANTC	2 cut(s)	84, 167
HpaII	CCGG	4 cut(s)	304, 316, 330, 338
HphI	GGTGA	2 cut(s)	162, 592
Hpy188I	TCNGA	4 cut(s)	13, 18, 83, 508
Hpy188III	TCNNGA	2 cut(s)	396, 753
Hpy99I	CGWCG	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	31, 730
HpyCH4III	ACNGT	2 cut(s)	116, 218
HpyCH4IV	ACGT	2 cut(s)	674, 700
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	356
HpyF3I	CTNAG	1 cut(s)	80
HpySE526I	ACGT	2 cut(s)	674, 700
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	2 cut(s)	139, 166
Kzo9I	GATC	2 cut(s)	13, 552
Lsp1109I	GCAGC	1 cut(s)	572
MaeI	CTAG	2 cut(s)	41, 656
MaeII	ACGT	2 cut(s)	674, 700
MalI	GATC	2 cut(s)	15, 554
MboI	GATC	2 cut(s)	13, 552
MboII	GAAGA	2 cut(s)	16, 190
MflI	RGATCY	1 cut(s)	552
MhlI	GDGCHC	4 cut(s)	131, 186, 693, 700
MlsI	TGGCCA	1 cut(s)	210
MluCI	AATT	2 cut(s)	237, 682
MluNI	TGGCCA	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	210
MscI	TGGCCA	1 cut(s)	210
MseI	TTAA	1 cut(s)	236
Msp20I	TGGCCA	1 cut(s)	210
MspA1I	CMGCKG	1 cut(s)	148
MspI	CCGG	4 cut(s)	304, 316, 330, 338
MspR9I	CCNGG	4 cut(s)	120, 316, 330, 694
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	2 cut(s)	120, 694
MwoI	GCNNNNNNNGC	1 cut(s)	356
NciI	CCSGG	2 cut(s)	316, 330
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	2 cut(s)	13, 552
NlaIII	CATG	2 cut(s)	139, 166
NlaIV	GGNNCC	5 cut(s)	128, 129, 130, 158, 690
PasI	CCCWGGG	1 cut(s)	693
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	2 cut(s)	84, 167
PflFI	GACNNNGTC	1 cut(s)	640
PflMI	CCANNNNNTGG	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	147, 587
PmaCI	CACGTG	2 cut(s)	675, 701
PmlI	CACGTG	2 cut(s)	675, 701
Ppu21I	YACGTR	2 cut(s)	675, 701
Psp6I	CCWGG	2 cut(s)	118, 692
PspCI	CACGTG	2 cut(s)	675, 701
PspGI	CCWGG	2 cut(s)	118, 692
PspN4I	GGNNCC	5 cut(s)	128, 129, 130, 158, 690
PspOMI	GGGCCC	1 cut(s)	127
PspPI	GGNCC	3 cut(s)	59, 127, 128
PsuI	RGATCY	1 cut(s)	552
PsyI	GACNNNGTC	1 cut(s)	640
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	2 cut(s)	146, 586
Sau3AI	GATC	2 cut(s)	13, 552
Sau96I	GGNCC	3 cut(s)	59, 127, 128
ScrFI	CCNGG	4 cut(s)	120, 316, 330, 694
SduI	GDGCHC	4 cut(s)	131, 186, 693, 700
Sse9I	AATT	2 cut(s)	237, 682
SsiI	CCGC	2 cut(s)	143, 146
SspMI	CTAG	2 cut(s)	41, 656
StyD4I	CCNGG	4 cut(s)	118, 314, 328, 692
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	2 cut(s)	116, 218
TaiI	ACGT	2 cut(s)	677, 703
TaqI	TCGA	1 cut(s)	353
TasI	AATT	2 cut(s)	237, 682
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	84, 167
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	1 cut(s)	636
TseI	GCWGC	1 cut(s)	585
TspDTI	ATGAA	1 cut(s)	61
TspRI	CASTG	1 cut(s)	636
Tth111I	GACNNNGTC	1 cut(s)	640
Van91I	CCANNNNNTGG	1 cut(s)	179
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XspI	CTAG	2 cut(s)	41, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.