Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0014100

Physical Location & Seq

Genomic Coordinates Reverse (-)

38182217 .. 38183838

Gene Structure 1622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00416130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCCCGAGTGGAGGACACGGCCCAATCGAAACGCGCCATGTGGCCAACAATCGGTCGCATTGCTATTTTGTCGCGTAGCGACAGTGAGTGGGCTCGGGGGACAAGTGGCATCGGGCCGTTGGCTTACCTTCTTCAACAACTCCCTCCTAGCTCTCTACCTCATAGGCCCTCCCACCTTCATCTCCCTCAGATTCCTCCAAGCCCCATATGGCAAGCACAACCGTCCAGGGTGGGGCCCCACCATGTCTCCGCCGCTGGCTTGGTTCCTCATGGAATCACCAACCCTTGCGCTCACTCTACTCCTCTTCCCCTATGGCCAACACAGTTCCAATCCCCAAGCCTTAATTCTAATGACCCCTTTCTTTTCCACTATTTCAACCGAACCTGCCTCTTCCCACTTCACCTCTACCGGAATACCACCCGGAAAACCACCCCCGGTTTTCCGGTCAGCGTGGCGTCGATGGCATTTGTGTTCAATCTGTTGAATGGTTATTTGCAATCCAGATGGGTGTCTCACTACAAGGACTATGAGAGTGATCATGGGTGGTTTTGGTGTAGGTTTTTTGTTGGGTTGGTTGTGTTTTTGTGTGGGATGGGTGTGAATGTGTGGTCTGATAGGGTTTTAGTGGGTTTGAAAAAAGAGGGTAGAGGGTATAAGATCCCCAAAGGGGGGTGGTTTGAGTTGGTGAGTTGCCCTAACTACTTTGGGGAAATAGTGGAGTGGATAGGATGGGCAGTGATGACTTGGTCATGGGCAGGATTAGGGTTTATGCTATACACGTGTGCCAATTTGGTGCCCAGGGCACGTGCGAACCATAGGTGGTATTTGGAGAAGTTTGGGGAGGACTATCCCAAGTCCAGAAAAGCTGTTATCCCTTTCTTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003865 GO:0006629 GO:0006694 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009917 GO:0010268 GO:0010817 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016229 GO:0016491 GO:0016627 GO:0016628 GO:0033765 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048878 GO:0050213 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00905 ko01100 ko01110 map00905 map01100 map01110

Pfam Domains

Protein Families

Steroid_dh

Protein Analysis

296

Amino Acids

33.73

Weight (kDa)

9.59

Isoelectric Point (pI)

44.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Steroid_dh	PF02544	148 - 296	9.1e-57	3-oxo-5-alpha-steroid 4-dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38050
fragaria_vesca	FvH4_6g12130
malus_domestica	MD04G1146500.v1.1 MD12G1159700.v1.1
prunus_persica	Prupe.6G270300_v2.0.a1 Prupe.6G270300_v2.0.a1
pyrus_communis	pycom12g15140
rosa_chinensis	RchiOBHm_Chr3g0463931
rosa_laevigata	RLG00000024734
rosa_multiflora	Rmu_co8513843.1_g000001 Rmu_sc0006492.1_g000004
rosa_roxburghii	Rroxscaffold_6G00416130
rosa_rugosa	Rorug03G0069400
rosa_samantha	Rh3BG130400 Rh3CG132800 Rh3DG131600
rosa_wichuraiana	Rw3G010660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	796
AccII	CGCG	2 cut(s)	36, 76
AciI	CCGC	2 cut(s)	252, 255
AclWI	GGATC	1 cut(s)	655
AcoI	YGGCCR	2 cut(s)	44, 317
AcvI	CACGTG	2 cut(s)	783, 809
AcyI	GRCGYC	1 cut(s)	458
AfiI	CCNNNNNNNGG	6 cut(s)	13, 53, 234, 670, 671, 672
AflIII	ACRYGT	2 cut(s)	780, 782
AgsI	TTSAA	5 cut(s)	137, 379, 478, 487, 637
AjnI	CCWGG	2 cut(s)	227, 800
AjuI	GAANNNNNNNTTGG	2 cut(s)	331, 363
AluBI	AGCT	2 cut(s)	153, 869
AluI	AGCT	2 cut(s)	153, 869
Alw26I	GTCTC	2 cut(s)	253, 519
AlwI	GGATC	1 cut(s)	655
Ama87I	CYCGRG	2 cut(s)	6, 96
AoxI	GGCC	7 cut(s)	3, 21, 44, 116, 167, 236, 317
ApaI	GGGCCC	1 cut(s)	240
AspLEI	GCGC	2 cut(s)	38, 293
AspS9I	GGNCC	6 cut(s)	4, 22, 116, 168, 236, 237
AsuC2I	CCSGG	2 cut(s)	424, 438
AsuHPI	GGTGA	3 cut(s)	271, 395, 700
AvaI	CYCGRG	2 cut(s)	6, 96
BaeGI	GKGCMC	3 cut(s)	240, 801, 808
BalI	TGGCCA	2 cut(s)	46, 319
BanI	GGYRCC	1 cut(s)	796
BanII	GRGCYC	2 cut(s)	97, 240
BbrPI	CACGTG	2 cut(s)	783, 809
BccI	CCATC	4 cut(s)	457, 501, 589, 726
BceAI	ACGGC	2 cut(s)	36, 103
BciT130I	CCWGG	2 cut(s)	229, 802
BclI	TGATCA	1 cut(s)	538
BcnI	CCSGG	2 cut(s)	424, 438
BcoDI	GTCTC	2 cut(s)	253, 519
BfaI	CTAG	1 cut(s)	150
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	4 cut(s)	229, 424, 438, 802
BmeT110I	CYCGRG	2 cut(s)	6, 96
BmgT120I	GGNCC	6 cut(s)	4, 22, 116, 168, 236, 237
BmiI	GGNNCC	5 cut(s)	237, 238, 239, 267, 798
BmrFI	CCNGG	4 cut(s)	229, 424, 438, 802
BmsI	GCATC	1 cut(s)	120
BpuMI	CCSGG	2 cut(s)	424, 438
BsaAI	YACGTR	2 cut(s)	783, 809
BsaHI	GRCGYC	1 cut(s)	458
BsaJI	CCNNGG	4 cut(s)	228, 436, 800, 801
BsaWI	WCCGGW	2 cut(s)	411, 445
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 53, 234, 670, 671, 672
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	229, 802
BseDI	CCNNGG	4 cut(s)	228, 436, 800, 801
BseGI	GGATG	2 cut(s)	600, 737
BseLI	CCNNNNNNNGG	6 cut(s)	13, 53, 234, 670, 671, 672
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	294
BseSI	GKGCMC	3 cut(s)	240, 801, 808
Bsh1236I	CGCG	2 cut(s)	36, 76
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	7 cut(s)	5, 23, 46, 118, 169, 238, 319
BshNI	GGYRCC	1 cut(s)	796
BsiEI	CGRYCG	1 cut(s)	58
BsiHKCI	CYCGRG	2 cut(s)	6, 96
BsiSI	CCGG	4 cut(s)	412, 424, 438, 446
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	6 cut(s)	13, 53, 234, 670, 671, 672
BsmAI	GTCTC	2 cut(s)	253, 519
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	7 cut(s)	5, 23, 46, 118, 169, 238, 319
BsoBI	CYCGRG	2 cut(s)	6, 96
Bsp120I	GGGCCC	1 cut(s)	236
Bsp1286I	GDGCHC	4 cut(s)	97, 240, 801, 808
Bsp143I	GATC	2 cut(s)	538, 660
BspACI	CCGC	2 cut(s)	252, 255
BspANI	GGCC	7 cut(s)	5, 23, 46, 118, 169, 238, 319
BspCNI	CTCAG	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	36, 76
BspLI	GGNNCC	5 cut(s)	237, 238, 239, 267, 798
BspMI	ACCTGC	1 cut(s)	395
BspPI	GGATC	1 cut(s)	655
BspT107I	GGYRCC	1 cut(s)	796
BsrDI	GCAATG	1 cut(s)	60
BssECI	CCNNGG	4 cut(s)	228, 436, 800, 801
BssMI	GATC	2 cut(s)	538, 660
BssNI	GRCGYC	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	229, 802
Bst4CI	ACNGT	3 cut(s)	86, 225, 327
Bst6I	CTCTTC	2 cut(s)	312, 398
BstACI	GRCGYC	1 cut(s)	458
BstBAI	YACGTR	2 cut(s)	783, 809
BstC8I	GCNNGC	2 cut(s)	216, 259
BstDEI	CTNAG	1 cut(s)	189
BstF5I	GGATG	2 cut(s)	600, 737
BstFNI	CGCG	2 cut(s)	36, 76
BstHHI	GCGC	2 cut(s)	38, 293
BstKTI	GATC	2 cut(s)	541, 663
BstMAI	GTCTC	2 cut(s)	253, 519
BstMBI	GATC	2 cut(s)	538, 660
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	2 cut(s)	229, 802
BstSCI	CCNGG	4 cut(s)	227, 422, 436, 800
BstSLI	GKGCMC	3 cut(s)	240, 801, 808
BstUI	CGCG	2 cut(s)	36, 76
BstX2I	RGATCY	1 cut(s)	660
BstYI	RGATCY	1 cut(s)	660
BsuRI	GGCC	7 cut(s)	5, 23, 46, 118, 169, 238, 319
BtsCI	GGATG	2 cut(s)	600, 737
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	2 cut(s)	91, 744
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	2 cut(s)	216, 259
CfoI	GCGC	2 cut(s)	38, 293
Cfr13I	GGNCC	6 cut(s)	4, 22, 116, 168, 236, 237
CseI	GACGC	1 cut(s)	447
CviAII	CATG	5 cut(s)	40, 245, 272, 542, 753
DdeI	CTNAG	1 cut(s)	189
DpnI	GATC	2 cut(s)	540, 662
DpnII	GATC	2 cut(s)	538, 660
EaeI	YGGCCR	2 cut(s)	44, 317
Eam1104I	CTCTTC	2 cut(s)	312, 398
EarI	CTCTTC	2 cut(s)	312, 398
EciI	GGCGGA	1 cut(s)	241
Eco24I	GRGCYC	2 cut(s)	97, 240
Eco72I	CACGTG	2 cut(s)	783, 809
Eco88I	CYCGRG	2 cut(s)	6, 96
EcoO109I	RGGNCCY	3 cut(s)	168, 236, 237
EcoRII	CCWGG	2 cut(s)	227, 800
EcoT38I	GRGCYC	2 cut(s)	97, 240
FaeI	CATG	5 cut(s)	43, 248, 275, 545, 756
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	5 cut(s)	39, 244, 271, 541, 752
FauNDI	CATATG	1 cut(s)	209
FbaI	TGATCA	1 cut(s)	538
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	2 cut(s)	607, 744
FriOI	GRGCYC	2 cut(s)	97, 240
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	1 cut(s)	150
GlaI	GCGC	2 cut(s)	37, 292
GluI	GCNGC	1 cut(s)	255
HaeIII	GGCC	7 cut(s)	5, 23, 46, 118, 169, 238, 319
HapII	CCGG	4 cut(s)	412, 424, 438, 446
HgaI	GACGC	1 cut(s)	447
HhaI	GCGC	2 cut(s)	38, 293
Hin1I	GRCGYC	1 cut(s)	458
Hin1II	CATG	5 cut(s)	43, 248, 275, 545, 756
Hin6I	GCGC	2 cut(s)	36, 291
HinP1I	GCGC	2 cut(s)	36, 291
HinfI	GANTC	2 cut(s)	193, 276
HpaII	CCGG	4 cut(s)	412, 424, 438, 446
HphI	GGTGA	3 cut(s)	271, 395, 700
Hpy188I	TCNGA	2 cut(s)	192, 616
Hpy188III	TCNNGA	2 cut(s)	504, 861
Hpy99I	CGWCG	1 cut(s)	463
HpyAV	CCTTC	2 cut(s)	140, 188
HpyCH4III	ACNGT	3 cut(s)	86, 225, 327
HpyCH4IV	ACGT	2 cut(s)	782, 808
HpyCH4V	TGCA	1 cut(s)	499
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	1 cut(s)	189
HpySE526I	ACGT	2 cut(s)	782, 808
Hsp92I	GRCGYC	1 cut(s)	458
Hsp92II	CATG	5 cut(s)	43, 248, 275, 545, 756
HspAI	GCGC	2 cut(s)	36, 291
Ksp22I	TGATCA	1 cut(s)	538
Kzo9I	GATC	2 cut(s)	538, 660
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	1 cut(s)	150
MaeII	ACGT	2 cut(s)	782, 808
MalI	GATC	2 cut(s)	540, 662
MboI	GATC	2 cut(s)	538, 660
MboII	GAAGA	3 cut(s)	125, 299, 385
MflI	RGATCY	1 cut(s)	660
MhlI	GDGCHC	4 cut(s)	97, 240, 801, 808
MlsI	TGGCCA	2 cut(s)	46, 319
MluCI	AATT	2 cut(s)	346, 790
MluNI	TGGCCA	2 cut(s)	46, 319
Mox20I	TGGCCA	2 cut(s)	46, 319
MscI	TGGCCA	2 cut(s)	46, 319
MseI	TTAA	1 cut(s)	345
Msp20I	TGGCCA	2 cut(s)	46, 319
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	4 cut(s)	412, 424, 438, 446
MspR9I	CCNGG	4 cut(s)	229, 424, 438, 802
MvaI	CCWGG	2 cut(s)	229, 802
MvnI	CGCG	2 cut(s)	36, 76
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	2 cut(s)	424, 438
NdeI	CATATG	1 cut(s)	209
NdeII	GATC	2 cut(s)	538, 660
NlaIII	CATG	5 cut(s)	43, 248, 275, 545, 756
NlaIV	GGNNCC	5 cut(s)	237, 238, 239, 267, 798
PasI	CCCWGGG	1 cut(s)	801
PcsI	WCGNNNNNNNCGW	1 cut(s)	26
PfeI	GAWTC	2 cut(s)	193, 276
PflFI	GACNNNGTC	1 cut(s)	748
PkrI	GCNGC	1 cut(s)	256
PmaCI	CACGTG	2 cut(s)	783, 809
PmlI	CACGTG	2 cut(s)	783, 809
Ppu21I	YACGTR	2 cut(s)	783, 809
Psp6I	CCWGG	2 cut(s)	227, 800
PspCI	CACGTG	2 cut(s)	783, 809
PspGI	CCWGG	2 cut(s)	227, 800
PspN4I	GGNNCC	5 cut(s)	237, 238, 239, 267, 798
PspOMI	GGGCCC	1 cut(s)	236
PspPI	GGNCC	6 cut(s)	4, 22, 116, 168, 236, 237
PsuI	RGATCY	1 cut(s)	660
PsyI	GACNNNGTC	1 cut(s)	748
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	2 cut(s)	538, 660
Sau96I	GGNCC	6 cut(s)	4, 22, 116, 168, 236, 237
ScrFI	CCNGG	4 cut(s)	229, 424, 438, 802
SduI	GDGCHC	4 cut(s)	97, 240, 801, 808
SfaNI	GCATC	1 cut(s)	120
Sse9I	AATT	2 cut(s)	346, 790
SsiI	CCGC	2 cut(s)	252, 255
SspMI	CTAG	1 cut(s)	150
StyD4I	CCNGG	4 cut(s)	227, 422, 436, 800
TaaI	ACNGT	3 cut(s)	86, 225, 327
TaiI	ACGT	2 cut(s)	785, 811
TaqI	TCGA	2 cut(s)	29, 461
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	2 cut(s)	346, 790
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	2 cut(s)	193, 276
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	2 cut(s)	91, 744
TspDTI	ATGAA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	91, 744
Tth111I	GACNNNGTC	1 cut(s)	748
XcmI	CCANNNNNNNNNTGG	1 cut(s)	207
XspI	CTAG	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.