AT2G38130

Acetyltransferase (GNAT) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011920
Physical Location & Seq
Reverse (-)
15978377 .. 15980763
2387 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G38130.1

Sequence Viewer

Length: 573 bp
ATGGAGAAAGAGATGGAAGATAAAGAAGAATTCGATGAGGGTGAGATTGAGTACACGAGTTATGCTGGTGAGCATCATCTGCCATTGATTATGTCTCTTGTTGACCAAGAACTTAGTGAACCTTACTCCATCTTTACTTACCGGTACTTCGTCTACCTCTGGCCGCAGCTATGCTTCCTGGCCTTTCACAAAGGTAAATGCGTAGGAACCATAGTCTGTAAGATGGGGGATCATCGACAGACTTTCAGAGGGTACATCGCTATGTTGGTTGTGATTAAACCATATCGTGGCCGAGGCATAGCCTCAGAGCTTGTCACAAGAGCGATAAAAGCGATGATGGAATCAGGCTGTGAAGAGGTAACTCTGGAGGCAGAAGTGAGTAACAAAGGAGCATTAGCACTATATGGGCGACTCGGGTTTATAAGAGCCAAACGGCTATACCACTATTACTTGAATGGGATGGATGCTTTTCGCCTGAAGCTCTTGTTCCCTAAGCCTCGTGTACCTCAAATACCTTCTCAAGTTCAAACCCAACAAGAGTATGAGACCTTTCCTAGGCCTCGTGTACCTTAA

Protein Analysis

190

Amino Acids

22.12

Weight (kDa)

6.96

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 31 - 140 8.8e-23 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 57 - 141 2.4e-12 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 57 - 144 2.4e-10 Acetyltransferase (GNAT) domain
FR47 PF08445 82 - 144 4.6e-07 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38130 AT2G38130
fragaria_vesca FvH4_6g54330
malus_domestica MD09G1002300.v1.1
prunus_persica Prupe.3G313900_v2.0.a1
pyrus_communis pycom111g00180 pycom17g00210
rosa_chinensis RchiOBHm_Chr2g0176551
rosa_laevigata RLG00000022422
rosa_multiflora Rmu_co8099318.1_g000001 Rmu_sc0001417.1_g000008 Rmu_sc0011904.1_g000003
rosa_roxburghii Rroxscaffold_2G00076310
rosa_rugosa Rorug02G0596100
rosa_samantha Rh2AG673900 Rh2BG685100 Rh2CG648100 Rh2DG699000
rosa_wichuraiana Rw2G055280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 422
AccB7I CCANNNNNTGG 1 cut(s) 287
AccI GTMKAC 1 cut(s) 153
AciI CCGC 1 cut(s) 164
AclWI GGATC 1 cut(s) 237
AcoI YGGCCR 2 cut(s) 161, 289
AcsI RAATTY 1 cut(s) 29
AcuI CTGAAG 1 cut(s) 497
AfaI GTAC 5 cut(s) 53, 146, 254, 504, 567
AfiI CCNNNNNNNGG 2 cut(s) 287, 555
AgeI ACCGGT 1 cut(s) 141
AgsI TTSAA 2 cut(s) 454, 527
AjnI CCWGG 1 cut(s) 177
AluBI AGCT 3 cut(s) 169, 310, 481
AluI AGCT 3 cut(s) 169, 310, 481
Alw26I GTCTC 2 cut(s) 99, 539
AlwI GGATC 1 cut(s) 237
Ama87I CYCGRG 1 cut(s) 413
AoxI GGCC 4 cut(s) 161, 180, 289, 557
ApeKI GCWGC 1 cut(s) 166
ApoI RAATTY 1 cut(s) 29
AsiGI ACCGGT 1 cut(s) 141
AspA2I CCTAGG 1 cut(s) 554
AsuHPI GGTGA 2 cut(s) 53, 80
AvaI CYCGRG 1 cut(s) 413
AvrII CCTAGG 1 cut(s) 554
BauI CACGAG 3 cut(s) 55, 498, 561
BbvI GCAGC 1 cut(s) 178
BccI CCATC 5 cut(s) 7, 137, 217, 331, 454
BceAI ACGGC 1 cut(s) 449
BciT130I CCWGG 1 cut(s) 179
BcoDI GTCTC 2 cut(s) 99, 539
BfaI CTAG 1 cut(s) 555
BisI GCNGC 2 cut(s) 164, 167
BlnI CCTAGG 1 cut(s) 554
BlsI GCNGC 2 cut(s) 165, 168
Bme1390I CCNGG 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 413
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 179
BmsI GCATC 2 cut(s) 82, 454
BpmI CTGGAG 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 2 cut(s) 292, 554
BsaWI WCCGGW 1 cut(s) 141
Bsc4I CCNNNNNNNGG 2 cut(s) 287, 555
Bse118I RCCGGY 1 cut(s) 141
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 2 cut(s) 292, 554
BseGI GGATG 2 cut(s) 465, 469
BseLI CCNNNNNNNGG 2 cut(s) 287, 555
BseMII CTCAG 1 cut(s) 318
BseXI GCAGC 1 cut(s) 178
BshFI GGCC 4 cut(s) 163, 182, 291, 559
BshTI ACCGGT 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 142
BslI CCNNNNNNNGG 2 cut(s) 287, 555
BsmAI GTCTC 2 cut(s) 99, 539
BsnI GGCC 4 cut(s) 163, 182, 291, 559
Bso31I GGTCTC 1 cut(s) 539
BsoBI CYCGRG 1 cut(s) 413
Bsp143I GATC 1 cut(s) 229
BspACI CCGC 1 cut(s) 164
BspANI GGCC 4 cut(s) 163, 182, 291, 559
BspCNI CTCAG 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 208
BspPI GGATC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 539
BsrFI RCCGGY 1 cut(s) 141
BssAI RCCGGY 1 cut(s) 141
BssECI CCNNGG 2 cut(s) 292, 554
BssMI GATC 1 cut(s) 229
BssSI CACGAG 3 cut(s) 55, 498, 561
BssT1I CCWWGG 1 cut(s) 554
Bst2BI CACGAG 3 cut(s) 55, 498, 561
Bst2UI CCWGG 1 cut(s) 179
Bst6I CTCTTC 1 cut(s) 348
BstAPI GCANNNNNTGC 1 cut(s) 79
BstDEI CTNAG 3 cut(s) 113, 304, 492
BstENI CCTNNNNNAGG 1 cut(s) 553
BstF5I GGATG 2 cut(s) 465, 469
BstKTI GATC 1 cut(s) 232
BstMAI GTCTC 2 cut(s) 99, 539
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 2 cut(s) 79, 329
BstNI CCWGG 1 cut(s) 179
BstSCI CCNGG 1 cut(s) 177
BstV1I GCAGC 1 cut(s) 178
BsuRI GGCC 4 cut(s) 163, 182, 291, 559
BtgZI GCGATG 2 cut(s) 241, 347
BtsCI GGATG 2 cut(s) 465, 469
Cfr10I RCCGGY 1 cut(s) 141
Csp6I GTAC 5 cut(s) 52, 145, 253, 503, 566
CspAI ACCGGT 1 cut(s) 141
CviQI GTAC 5 cut(s) 52, 145, 253, 503, 566
DdeI CTNAG 3 cut(s) 113, 304, 492
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
EaeI YGGCCR 2 cut(s) 161, 289
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Eco130I CCWWGG 1 cut(s) 554
Eco147I AGGCCT 1 cut(s) 559
Eco31I GGTCTC 1 cut(s) 539
Eco57I CTGAAG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 413
EcoNI CCTNNNNNAGG 1 cut(s) 553
EcoRI GAATTC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 554
ErhI CCWWGG 1 cut(s) 554
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 2 cut(s) 164, 167
FokI GGATG 2 cut(s) 472, 476
Fsp4HI GCNGC 2 cut(s) 164, 167
FspBI CTAG 1 cut(s) 555
GluI GCNGC 2 cut(s) 164, 167
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 4 cut(s) 163, 182, 291, 559
HapII CCGG 1 cut(s) 142
HincII GTYRAC 1 cut(s) 103
HindII GTYRAC 1 cut(s) 103
HinfI GANTC 2 cut(s) 341, 411
HpaII CCGG 1 cut(s) 142
HphI GGTGA 2 cut(s) 53, 80
Hpy166II GTNNAC 6 cut(s) 54, 103, 119, 154, 503, 566
Hpy188I TCNGA 2 cut(s) 248, 307
Hpy188III TCNNGA 1 cut(s) 365
Hpy8I GTNNAC 6 cut(s) 54, 103, 119, 154, 503, 566
HpyAV CCTTC 1 cut(s) 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 329
HpyF3I CTNAG 3 cut(s) 113, 304, 492
Kzo9I GATC 1 cut(s) 229
LmnI GCTCC 1 cut(s) 389
LpnPI CCDG 8 cut(s) 51, 145, 155, 164, 191, 330, 350, 488
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 2 cut(s) 82, 454
MaeI CTAG 1 cut(s) 555
MaeIII GTNAC 3 cut(s) 313, 358, 380
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MboII GAAGA 3 cut(s) 29, 38, 365
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 405
MseI TTAA 2 cut(s) 276, 571
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 179
MvaI CCWGG 1 cut(s) 179
MwoI GCNNNNNNNGC 2 cut(s) 79, 329
NdeII GATC 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 317
NmuCI GTSAC 1 cut(s) 313
PceI AGGCCT 1 cut(s) 559
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 287
PinAI ACCGGT 1 cut(s) 141
PkrI GCNGC 2 cut(s) 165, 168
PleI GAGTC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 405
PsiI TTATAA 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 208
RsaI GTAC 5 cut(s) 53, 146, 254, 504, 567
RsaNI GTAC 5 cut(s) 52, 145, 253, 503, 566
RseI CAYNNNNRTG 1 cut(s) 260
SaqAI TTAA 2 cut(s) 276, 571
SatI GCNGC 2 cut(s) 164, 167
Sau3AI GATC 1 cut(s) 229
SchI GAGTC 1 cut(s) 405
ScrFI CCNGG 1 cut(s) 179
SfaNI GCATC 2 cut(s) 82, 454
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 1 cut(s) 29
SseBI AGGCCT 1 cut(s) 559
SsiI CCGC 1 cut(s) 164
SspMI CTAG 1 cut(s) 555
StuI AGGCCT 1 cut(s) 559
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 554
TaqI TCGA 2 cut(s) 33, 235
TasI AATT 1 cut(s) 29
TatI WGTACW 1 cut(s) 51
TauI GCSGC 1 cut(s) 166
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 2 cut(s) 276, 571
Tru9I TTAA 2 cut(s) 276, 571
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 553
XapI RAATTY 1 cut(s) 29
XmaJI CCTAGG 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.