Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011920

Physical Location & Seq

Genomic Coordinates Forward (+)

39692037 .. 39693024

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g54330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAATCATCGGAGATAGAATACGTGAGCTACTCGGGAGAAGAGCATCTGCCGCTGATAATGGGGCTGGTGGACAAGGAGCTGAGCGAGCCGTACTCGATCTTCACGTACCGCTACTTCGTGTATTTGTGGCCTCAGCTGTGTTTTCTGGCCTTCCACAGAGGCAAGTGTGTGGGAACCGTCGTGTGTAAGATGGGGGAGCACCGCAACACCTACAGAGGCTACATCGCCATGCTCGTCGTCGTCGATTCCTACCGAGGCAGAGGGATCGCTACCCAGCTCGTTACCAGATCTATTCAAGTCATGATGGAATCCGGGTGTGATGAGGTCACACTTGAAGCAGAAGTGAGTAACAAAGGAGCACTGGCTCTATATGGGCGTCTTGGGTTCATAAGGGCCAAAAGGCTCTTCCGTTACTACCTCAACGGGGCTGATGCTTTCCGTCTCAAGCTGCTCTTTCCACGCCCGACTTCCCCTTGTATCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031417 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

163

Amino Acids

18.56

Weight (kDa)

8.58

Isoelectric Point (pI)

21.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	25 - 130	1e-20	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	47 - 131	1.3e-11	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	47 - 135	2.8e-09	Acetyltransferase (GNAT) domain
FR47	PF08445	70 - 133	7.8e-08	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38130 AT2G38130
fragaria_vesca	FvH4_6g54330
malus_domestica	MD09G1002300.v1.1
prunus_persica	Prupe.3G313900_v2.0.a1
pyrus_communis	pycom111g00180 pycom17g00210
rosa_chinensis	RchiOBHm_Chr2g0176551
rosa_laevigata	RLG00000022422
rosa_multiflora	Rmu_co8099318.1_g000001 Rmu_sc0001417.1_g000008 Rmu_sc0011904.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076310
rosa_rugosa	Rorug02G0596100
rosa_samantha	Rh2AG673900 Rh2BG685100 Rh2CG648100 Rh2DG699000
rosa_wichuraiana	Rw2G055280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	53, 112, 205
AclWI	GGATC	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	379
AfaI	GTAC	2 cut(s)	95, 110
AfiI	CCNNNNNNNGG	1 cut(s)	427
AgsI	TTSAA	2 cut(s)	299, 338
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	5 cut(s)	30, 82, 139, 280, 451
AluI	AGCT	5 cut(s)	30, 82, 139, 280, 451
Alw21I	GWGCWC	2 cut(s)	204, 364
Alw26I	GTCTC	1 cut(s)	449
AlwI	GGATC	1 cut(s)	275
Ama87I	CYCGRG	1 cut(s)	34
AoxI	GGCC	3 cut(s)	131, 150, 396
ApeKI	GCWGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	396
AsuC2I	CCSGG	1 cut(s)	316
AvaI	CYCGRG	1 cut(s)	34
BarI	GAAGNNNNNNTAC	4 cut(s)	86, 101, 118, 133
Bbv12I	GWGCWC	2 cut(s)	204, 364
BbvCI	CCTCAGC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	438
BccI	CCATC	2 cut(s)	187, 301
BceAI	ACGGC	1 cut(s)	76
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	214
BglII	AGATCT	1 cut(s)	290
BisI	GCNGC	2 cut(s)	53, 452
BlpI	GCTNAGC	1 cut(s)	83
BlsI	GCNGC	2 cut(s)	54, 453
Bme1390I	CCNGG	1 cut(s)	316
BmeT110I	CYCGRG	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	55, 424
BplI	GAGNNNNNCTC	2 cut(s)	80, 112
Bpu10I	CCTNAGC	1 cut(s)	135
Bpu1102I	GCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	316
BsaAI	YACGTR	2 cut(s)	25, 108
BsaHI	GRCGYC	1 cut(s)	379
BsaJI	CCNNGG	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	427
Bse1I	ACTGG	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	256
BseLI	CCNNNNNNNGG	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	74, 149
BseNI	ACTGG	1 cut(s)	369
BseXI	GCAGC	1 cut(s)	438
BseYI	CCCAGC	1 cut(s)	276
BshFI	GGCC	3 cut(s)	133, 152, 398
BsiHKAI	GWGCWC	2 cut(s)	204, 364
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	1 cut(s)	315
BslI	CCNNNNNNNGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	449
BsmBI	CGTCTC	1 cut(s)	449
BsnI	GGCC	3 cut(s)	133, 152, 398
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	2 cut(s)	204, 364
Bsp143I	GATC	3 cut(s)	99, 267, 290
Bsp1720I	GCTNAGC	1 cut(s)	83
BspACI	CCGC	3 cut(s)	53, 112, 205
BspANI	GGCC	3 cut(s)	133, 152, 398
BspCNI	CTCAG	2 cut(s)	75, 148
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	2 cut(s)	36, 413
BsrI	ACTGG	1 cut(s)	369
BssECI	CCNNGG	1 cut(s)	256
BssMI	GATC	3 cut(s)	99, 267, 290
BssNI	GRCGYC	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	36, 413
BstACI	GRCGYC	1 cut(s)	379
BstBAI	YACGTR	2 cut(s)	25, 108
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	83, 135
BstKTI	GATC	3 cut(s)	102, 270, 293
BstMAI	GTCTC	1 cut(s)	449
BstMBI	GATC	3 cut(s)	99, 267, 290
BstMWI	GCNNNNNNNGC	2 cut(s)	52, 88
BstSCI	CCNGG	1 cut(s)	314
BstSFI	CTRYAG	1 cut(s)	214
BstV1I	GCAGC	1 cut(s)	438
BstX2I	RGATCY	1 cut(s)	290
BstYI	RGATCY	1 cut(s)	290
BsuRI	GGCC	3 cut(s)	133, 152, 398
BtgZI	GCGATG	1 cut(s)	211
BtsIMutI	CAGTG	1 cut(s)	362
Cac8I	GCNNGC	1 cut(s)	89
CciI	TCATGA	1 cut(s)	303
Cfr13I	GGNCC	1 cut(s)	396
CseI	GACGC	1 cut(s)	368
Csp6I	GTAC	2 cut(s)	94, 109
CviAII	CATG	2 cut(s)	232, 304
CviQI	GTAC	2 cut(s)	94, 109
DdeI	CTNAG	2 cut(s)	83, 135
DpnI	GATC	3 cut(s)	101, 269, 292
DpnII	GATC	3 cut(s)	99, 267, 290
Eam1104I	CTCTTC	2 cut(s)	36, 413
EarI	CTCTTC	2 cut(s)	36, 413
Eco88I	CYCGRG	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	449
FaeI	CATG	2 cut(s)	235, 307
FaiI	YATR	5 cut(s)	233, 305, 373, 375, 392
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FatI	CATG	2 cut(s)	231, 303
Fnu4HI	GCNGC	2 cut(s)	53, 452
Fsp4HI	GCNGC	2 cut(s)	53, 452
GluI	GCNGC	2 cut(s)	53, 452
GsaI	CCCAGC	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	133, 152, 398
HapII	CCGG	1 cut(s)	315
HgaI	GACGC	1 cut(s)	368
Hin1I	GRCGYC	1 cut(s)	379
Hin1II	CATG	2 cut(s)	235, 307
HinfI	GANTC	3 cut(s)	5, 248, 311
HpaII	CCGG	1 cut(s)	315
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	36, 304
Hpy8I	GTNNAC	1 cut(s)	73
Hpy99I	CGWCG	4 cut(s)	185, 242, 245, 248
HpyAV	CCTTC	1 cut(s)	163
HpyCH4III	ACNGT	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	24, 107
HpyF10VI	GCNNNNNNNGC	2 cut(s)	52, 88
HpyF3I	CTNAG	2 cut(s)	83, 135
HpySE526I	ACGT	2 cut(s)	24, 107
Hsp92I	GRCGYC	1 cut(s)	379
Hsp92II	CATG	2 cut(s)	235, 307
Kzo9I	GATC	3 cut(s)	99, 267, 290
LguI	GCTCTTC	2 cut(s)	36, 413
LmnI	GCTCC	3 cut(s)	79, 199, 359
LpnPI	CCDG	6 cut(s)	53, 134, 290, 301, 328, 350
Lsp1109I	GCAGC	1 cut(s)	438
LweI	GCATC	2 cut(s)	55, 424
MaeII	ACGT	2 cut(s)	24, 107
MaeIII	GTNAC	4 cut(s)	283, 328, 350, 413
MalI	GATC	3 cut(s)	101, 269, 292
MboI	GATC	3 cut(s)	99, 267, 290
MboII	GAAGA	3 cut(s)	53, 94, 400
MfeI	CAATTG	1 cut(s)	484
MflI	RGATCY	1 cut(s)	290
MhlI	GDGCHC	2 cut(s)	204, 364
MluCI	AATT	1 cut(s)	484
MnlI	CCTC	7 cut(s)	144, 155, 212, 251, 257, 319, 431
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	2 cut(s)	55, 139
MspI	CCGG	1 cut(s)	315
MspR9I	CCNGG	1 cut(s)	316
MunI	CAATTG	1 cut(s)	484
MwoI	GCNNNNNNNGC	2 cut(s)	52, 88
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	3 cut(s)	99, 267, 290
NlaIII	CATG	2 cut(s)	235, 307
NlaIV	GGNNCC	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	328
PagI	TCATGA	1 cut(s)	303
PciSI	GCTCTTC	2 cut(s)	36, 413
PcsI	WCGNNNNNNNCGW	3 cut(s)	104, 234, 243
PfeI	GAWTC	3 cut(s)	5, 248, 311
PkrI	GCNGC	2 cut(s)	54, 453
Ppu21I	YACGTR	2 cut(s)	25, 108
PspFI	CCCAGC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	290
PvuII	CAGCTG	1 cut(s)	139
RsaI	GTAC	2 cut(s)	95, 110
RsaNI	GTAC	2 cut(s)	94, 109
RseI	CAYNNNNRTG	1 cut(s)	230
SapI	GCTCTTC	2 cut(s)	36, 413
SatI	GCNGC	2 cut(s)	53, 452
Sau3AI	GATC	3 cut(s)	99, 267, 290
Sau96I	GGNCC	1 cut(s)	396
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	2 cut(s)	204, 364
SfaNI	GCATC	2 cut(s)	55, 424
SfcI	CTRYAG	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	1 cut(s)	484
SsiI	CCGC	3 cut(s)	53, 112, 205
StyD4I	CCNGG	1 cut(s)	314
TaaI	ACNGT	1 cut(s)	181
TaiI	ACGT	2 cut(s)	27, 110
TaqI	TCGA	2 cut(s)	98, 246
TasI	AATT	1 cut(s)	484
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	3 cut(s)	5, 248, 311
TscAI	CASTG	1 cut(s)	369
TseFI	GTSAC	1 cut(s)	328
TseI	GCWGC	1 cut(s)	451
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	1 cut(s)	379
TspGWI	ACGGA	2 cut(s)	401, 431
TspRI	CASTG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.