Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8099318.1

Orthogroup ID

OG0011920

Physical Location & Seq

Genomic Coordinates Forward (+)

16 .. 600

Gene Structure 585 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8099318.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 497 bp

atggaattccttagtaagaaagatgaagaagaagaagaagcgcgggcggcgtcggagatagagtatgtgagctatgagggagaagatcatctgccgctgatcatggggctggtggacaaagagctgagcgagccatactcgatcttcacgtacaggtacttcgtgtacctgtggcctcaactgtgttttctggcattccacagaggcaagtgtgtgggaaccgtcgtctgtaagatgggggaacatcgcaacacctacagaggctacatcgccatgctcgtcgtcatcgattcctacagaggtaaagggatcgctactcaactcgttaccagatctattcaagtcatgatggaatcaggttgcgaagaggtcacacttgaggcagaagtgacgaataaaggagcactggcactgtatgggcgtcttgggttcgtaagggccaaaaggctcttccgttactacttgaacggcgttgatgctttccgtctcaagctgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031417 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

166

Amino Acids

19.15

Weight (kDa)

5.98

Isoelectric Point (pI)

22.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38130 AT2G38130
fragaria_vesca	FvH4_6g54330
malus_domestica	MD09G1002300.v1.1
prunus_persica	Prupe.3G313900_v2.0.a1
pyrus_communis	pycom111g00180 pycom17g00210
rosa_chinensis	RchiOBHm_Chr2g0176551
rosa_laevigata	RLG00000022422
rosa_multiflora	Rmu_co8099318.1_g000001 Rmu_sc0001417.1_g000008 Rmu_sc0011904.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076310
rosa_rugosa	Rorug02G0596100
rosa_samantha	Rh2AG673900 Rh2BG685100 Rh2CG648100 Rh2DG699000
rosa_wichuraiana	Rw2G055280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	43
AciI	CCGC	3 cut(s)	43, 47, 95
AclWI	GGATC	1 cut(s)	317
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	2 cut(s)	50, 421
AfaI	GTAC	3 cut(s)	152, 158, 167
AgsI	TTSAA	2 cut(s)	341, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AluBI	AGCT	3 cut(s)	72, 124, 493
AluI	AGCT	3 cut(s)	72, 124, 493
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	491
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	173, 438
ApeKI	GCWGC	1 cut(s)	493
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	438
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	1 cut(s)	480
BccI	CCATC	2 cut(s)	229, 343
BceAI	ACGGC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	491
BfmI	CTRYAG	2 cut(s)	256, 295
BglII	AGATCT	1 cut(s)	332
BisI	GCNGC	3 cut(s)	48, 95, 494
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	3 cut(s)	49, 96, 495
BmgT120I	GGNCC	1 cut(s)	438
BmiI	GGNNCC	1 cut(s)	220
BmsI	GCATC	1 cut(s)	466
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
Bpu1102I	GCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	398, 473
Bsa29I	ATCGAT	1 cut(s)	288
BsaAI	YACGTR	1 cut(s)	150
BsaHI	GRCGYC	2 cut(s)	50, 421
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse1I	ACTGG	1 cut(s)	411
BseCI	ATCGAT	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	1 cut(s)	411
BseXI	GCAGC	1 cut(s)	480
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	175, 440
BshVI	ATCGAT	1 cut(s)	288
BsiHKAI	GWGCWC	1 cut(s)	406
BsmAI	GTCTC	1 cut(s)	491
BsmBI	CGTCTC	1 cut(s)	491
BsmI	GAATGC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	175, 440
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	5 cut(s)	85, 99, 141, 309, 332
Bsp1720I	GCTNAGC	1 cut(s)	125
BspACI	CCGC	3 cut(s)	43, 47, 95
BspANI	GGCC	2 cut(s)	175, 440
BspCNI	CTCAG	1 cut(s)	117
BspDI	ATCGAT	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	43
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	317
BspQI	GCTCTTC	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	411
BssMI	GATC	5 cut(s)	85, 99, 141, 309, 332
BssNI	GRCGYC	2 cut(s)	50, 421
Bst4CI	ACNGT	3 cut(s)	183, 223, 414
Bst6I	CTCTTC	2 cut(s)	360, 455
BstACI	GRCGYC	2 cut(s)	50, 421
BstBAI	YACGTR	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	45, 131
BstDEI	CTNAG	2 cut(s)	11, 125
BstFNI	CGCG	1 cut(s)	43
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	5 cut(s)	88, 102, 144, 312, 335
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	5 cut(s)	85, 99, 141, 309, 332
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 130
BstSFI	CTRYAG	2 cut(s)	256, 295
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	332
Bsu15I	ATCGAT	1 cut(s)	288
BsuRI	GGCC	2 cut(s)	175, 440
BsuTUI	ATCGAT	1 cut(s)	288
BtgZI	GCGATG	2 cut(s)	230, 253
BtsIMutI	CAGTG	2 cut(s)	404, 410
Cac8I	GCNNGC	2 cut(s)	45, 131
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	438
ClaI	ATCGAT	1 cut(s)	288
CseI	GACGC	2 cut(s)	39, 410
Csp6I	GTAC	3 cut(s)	151, 157, 166
CviAII	CATG	3 cut(s)	103, 274, 346
CviJI	RGCY	9 cut(s)	72, 109, 124, 133, 175, 264, 440, 448, 493
CviKI_1	RGCY	9 cut(s)	72, 109, 124, 133, 175, 264, 440, 448, 493
CviQI	GTAC	3 cut(s)	151, 157, 166
DdeI	CTNAG	2 cut(s)	11, 125
DpnI	GATC	5 cut(s)	87, 101, 143, 311, 334
DpnII	GATC	5 cut(s)	85, 99, 141, 309, 332
Eam1104I	CTCTTC	2 cut(s)	360, 455
EarI	CTCTTC	2 cut(s)	360, 455
EcoRI	GAATTC	1 cut(s)	5
Esp3I	CGTCTC	1 cut(s)	491
FaeI	CATG	3 cut(s)	106, 277, 349
FaiI	YATR	7 cut(s)	66, 75, 104, 136, 275, 347, 417
FatI	CATG	3 cut(s)	102, 273, 345
FauI	CCCGC	1 cut(s)	36
FbaI	TGATCA	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	48, 95, 494
Fsp4HI	GCNGC	3 cut(s)	48, 95, 494
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	3 cut(s)	48, 95, 494
HaeIII	GGCC	2 cut(s)	175, 440
HgaI	GACGC	2 cut(s)	39, 410
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	2 cut(s)	50, 421
Hin1II	CATG	3 cut(s)	106, 277, 349
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	2 cut(s)	290, 353
Hpy166II	GTNNAC	2 cut(s)	115, 166
Hpy188I	TCNGA	1 cut(s)	55
Hpy188III	TCNNGA	1 cut(s)	346
Hpy8I	GTNNAC	2 cut(s)	115, 166
Hpy99I	CGWCG	3 cut(s)	55, 227, 284
HpyCH4III	ACNGT	3 cut(s)	183, 223, 414
HpyCH4IV	ACGT	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 130
HpyF3I	CTNAG	2 cut(s)	11, 125
HpySE526I	ACGT	1 cut(s)	149
Hsp92I	GRCGYC	2 cut(s)	50, 421
Hsp92II	CATG	3 cut(s)	106, 277, 349
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	99
Kzo9I	GATC	5 cut(s)	85, 99, 141, 309, 332
LguI	GCTCTTC	1 cut(s)	455
LmnI	GCTCC	1 cut(s)	401
LpnPI	CCDG	7 cut(s)	95, 139, 176, 182, 342, 343, 392
Lsp1109I	GCAGC	1 cut(s)	480
LweI	GCATC	1 cut(s)	466
MaeII	ACGT	1 cut(s)	149
MaeIII	GTNAC	4 cut(s)	325, 370, 388, 455
MalI	GATC	5 cut(s)	87, 101, 143, 311, 334
MboI	GATC	5 cut(s)	85, 99, 141, 309, 332
MboII	GAAGA	8 cut(s)	38, 41, 44, 47, 95, 136, 377, 442
MflI	RGATCY	1 cut(s)	332
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	7 cut(s)	70, 186, 197, 254, 293, 361, 373
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	97
Mva1269I	GAATGC	1 cut(s)	194
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	2 cut(s)	47, 130
NdeII	GATC	5 cut(s)	85, 99, 141, 309, 332
NlaIII	CATG	3 cut(s)	106, 277, 349
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	2 cut(s)	370, 388
PagI	TCATGA	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	455
PcsI	WCGNNNNNNNCGW	3 cut(s)	146, 276, 285
PctI	GAATGC	1 cut(s)	194
PfeI	GAWTC	2 cut(s)	290, 353
PkrI	GCNGC	3 cut(s)	49, 96, 495
Ppu21I	YACGTR	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	438
PsuI	RGATCY	1 cut(s)	332
RsaI	GTAC	3 cut(s)	152, 158, 167
RsaNI	GTAC	3 cut(s)	151, 157, 166
RseI	CAYNNNNRTG	1 cut(s)	272
SapI	GCTCTTC	1 cut(s)	455
SatI	GCNGC	3 cut(s)	48, 95, 494
Sau3AI	GATC	5 cut(s)	85, 99, 141, 309, 332
Sau96I	GGNCC	1 cut(s)	438
SduI	GDGCHC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	466
SfcI	CTRYAG	2 cut(s)	256, 295
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	377, 488
SmoI	CTYRAG	2 cut(s)	377, 488
Sse9I	AATT	1 cut(s)	5
SsiI	CCGC	3 cut(s)	43, 47, 95
TaaI	ACNGT	3 cut(s)	183, 223, 414
TaiI	ACGT	1 cut(s)	152
TaqI	TCGA	2 cut(s)	140, 288
TasI	AATT	1 cut(s)	5
TauI	GCSGC	2 cut(s)	50, 97
TfiI	GAWTC	2 cut(s)	290, 353
TscAI	CASTG	2 cut(s)	411, 417
TseFI	GTSAC	2 cut(s)	370, 388
TseI	GCWGC	1 cut(s)	493
Tsp45I	GTSAC	2 cut(s)	370, 388
TspDTI	ATGAA	1 cut(s)	39
TspGWI	ACGGA	2 cut(s)	443, 473
TspRI	CASTG	2 cut(s)	411, 417
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.