Rroxscaffold_2G00076310

N-alpha-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011920
Physical Location & Seq
Reverse (-)
202155 .. 206525
4371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00076310.1

Sequence Viewer

Length: 636 bp
ATGGAATTCCTTAGTAAGAAAGGTGAAGAAGAAGCGTGGGCGGCGTCGGAGATAGAGTATGTGAGCTATGAGGGAGAAGATCATCTGCCGCTGATCATGGGGCTGGTGGACAAAGAGCTGAGCGAGCCATACTCGATCTTCACGTACAGGTACTTCGTGTACCTGTGGCCCCAACTGTGTTTTCTGGCATTCCACAGAGGCAAGTGTGTGGGAACCGTCGTCTGTAAGATGGGGGAACATCGCAACACCTACAGAGGCTACATCGCCATGCTCGTCGTCATCGATTCCTACAGAGGTAAAGGGATCGCTACTCAACTCGTTACCAGATCTATTCAAGTCATGATGGAATCAGGTTGCGAAGAGGTCACACTTGAGGCAGAAGTGACGAATAAAGGAGCACTGGCACTGTATGGGCGTCTTGGGTTCATAAGGGCCAAAAGGCTCTTCCGTTACTACTTGAACGGCGTTGATGCTTTCCTTTTGAAACTTGAGCTGCCATGTCAAAGCGTGCACCAAATCCAACCATTCCCGTCACAGAGAAAGAAGCAAAAGAAATCCATTCCTGCTGCGAATCAGGATCAGGAAACCGACGTAGACTATAACAAAGAGCCATGGCTCGAGCCAAGCCGCGCCTGA

Protein Analysis

211

Amino Acids

24.3

Weight (kDa)

6.45

Isoelectric Point (pI)

29.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 38 - 142 8.6e-21 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 59 - 143 1.9e-11 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 59 - 148 5.4e-09 Acetyltransferase (GNAT) domain
FR47 PF08445 82 - 145 5.4e-07 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38130 AT2G38130
fragaria_vesca FvH4_6g54330
malus_domestica MD09G1002300.v1.1
prunus_persica Prupe.3G313900_v2.0.a1
pyrus_communis pycom111g00180 pycom17g00210
rosa_chinensis RchiOBHm_Chr2g0176551
rosa_laevigata RLG00000022422
rosa_multiflora Rmu_co8099318.1_g000001 Rmu_sc0001417.1_g000008 Rmu_sc0011904.1_g000003
rosa_roxburghii Rroxscaffold_2G00076310
rosa_rugosa Rorug02G0596100
rosa_samantha Rh2AG673900 Rh2BG685100 Rh2CG648100 Rh2DG699000
rosa_wichuraiana Rw2G055280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 594
AccII CGCG 1 cut(s) 630
AciI CCGC 3 cut(s) 41, 89, 628
AclWI GGATC 2 cut(s) 311, 585
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 44, 415
AfaI GTAC 3 cut(s) 146, 152, 161
AgsI TTSAA 3 cut(s) 335, 460, 484
AjuI GAANNNNNNNTTGG 4 cut(s) 165, 197, 428, 460
AluBI AGCT 3 cut(s) 66, 118, 493
AluI AGCT 3 cut(s) 66, 118, 493
Alw21I GWGCWC 2 cut(s) 400, 513
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 2 cut(s) 311, 585
Ama87I CYCGRG 1 cut(s) 617
AoxI GGCC 2 cut(s) 167, 432
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 493, 566
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 632
AspS9I GGNCC 2 cut(s) 168, 432
AsuHPI GGTGA 1 cut(s) 35
AvaI CYCGRG 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 513
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
Bbv12I GWGCWC 2 cut(s) 400, 513
BbvI GCAGC 2 cut(s) 480, 553
BccI CCATC 2 cut(s) 223, 337
BceAI ACGGC 1 cut(s) 478
BclI TGATCA 1 cut(s) 93
BfmI CTRYAG 2 cut(s) 250, 289
BglII AGATCT 1 cut(s) 326
BisI GCNGC 5 cut(s) 42, 89, 494, 567, 628
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 5 cut(s) 43, 90, 495, 568, 629
BmeT110I CYCGRG 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 168, 432
BmiI GGNNCC 2 cut(s) 170, 214
BmsI GCATC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu1102I GCTNAGC 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 392, 509
Bsa29I ATCGAT 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 44, 415
BsaJI CCNNGG 1 cut(s) 611
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
Bse1I ACTGG 1 cut(s) 405
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 611
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 1 cut(s) 405
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 2 cut(s) 480, 553
Bsh1236I CGCG 1 cut(s) 630
BshFI GGCC 2 cut(s) 169, 434
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 2 cut(s) 400, 513
BsiHKCI CYCGRG 1 cut(s) 617
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 2 cut(s) 169, 434
BsoBI CYCGRG 1 cut(s) 617
Bsp1286I GDGCHC 2 cut(s) 400, 513
Bsp143I GATC 6 cut(s) 79, 93, 135, 303, 326, 577
Bsp1720I GCTNAGC 1 cut(s) 119
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 3 cut(s) 41, 89, 628
BspANI GGCC 2 cut(s) 169, 434
BspCNI CTCAG 1 cut(s) 111
BspDI ATCGAT 1 cut(s) 282
BspFNI CGCG 1 cut(s) 630
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 170, 214
BspPI GGATC 2 cut(s) 311, 585
BspQI GCTCTTC 1 cut(s) 449
BsrI ACTGG 1 cut(s) 405
BssECI CCNNGG 1 cut(s) 611
BssMI GATC 6 cut(s) 79, 93, 135, 303, 326, 577
BssNI GRCGYC 2 cut(s) 44, 415
BssT1I CCWWGG 1 cut(s) 611
Bst4CI ACNGT 3 cut(s) 177, 217, 408
Bst6I CTCTTC 2 cut(s) 354, 449
BstACI GRCGYC 2 cut(s) 44, 415
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 125, 509
BstDEI CTNAG 2 cut(s) 11, 119
BstDSI CCRYGG 1 cut(s) 611
BstFNI CGCG 1 cut(s) 630
BstHHI GCGC 1 cut(s) 632
BstKTI GATC 6 cut(s) 82, 96, 138, 306, 329, 580
BstMBI GATC 6 cut(s) 79, 93, 135, 303, 326, 577
BstMWI GCNNNNNNNGC 2 cut(s) 41, 124
BstSFI CTRYAG 2 cut(s) 250, 289
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 1 cut(s) 630
BstV1I GCAGC 2 cut(s) 480, 553
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 169, 434
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 611
BtgZI GCGATG 2 cut(s) 224, 247
BtsIMutI CAGTG 2 cut(s) 398, 404
Cac8I GCNNGC 2 cut(s) 125, 509
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 632
Cfr13I GGNCC 2 cut(s) 168, 432
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 2 cut(s) 33, 404
Csp6I GTAC 3 cut(s) 145, 151, 160
CviAII CATG 5 cut(s) 97, 268, 340, 498, 612
CviQI GTAC 3 cut(s) 145, 151, 160
DdeI CTNAG 2 cut(s) 11, 119
DpnI GATC 6 cut(s) 81, 95, 137, 305, 328, 579
DpnII GATC 6 cut(s) 79, 93, 135, 303, 326, 577
Eam1104I CTCTTC 2 cut(s) 354, 449
EarI CTCTTC 2 cut(s) 354, 449
Eco130I CCWWGG 1 cut(s) 611
Eco88I CYCGRG 1 cut(s) 617
EcoRI GAATTC 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 611
ErhI CCWWGG 1 cut(s) 611
FaeI CATG 5 cut(s) 100, 271, 343, 501, 615
FatI CATG 5 cut(s) 96, 267, 339, 497, 611
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 594
Fnu4HI GCNGC 5 cut(s) 42, 89, 494, 567, 628
Fsp4HI GCNGC 5 cut(s) 42, 89, 494, 567, 628
GlaI GCGC 1 cut(s) 631
GluI GCNGC 5 cut(s) 42, 89, 494, 567, 628
HaeIII GGCC 2 cut(s) 169, 434
HgaI GACGC 2 cut(s) 33, 404
HhaI GCGC 1 cut(s) 632
Hin1I GRCGYC 2 cut(s) 44, 415
Hin1II CATG 5 cut(s) 100, 271, 343, 501, 615
Hin6I GCGC 1 cut(s) 630
HinP1I GCGC 1 cut(s) 630
HinfI GANTC 3 cut(s) 284, 347, 571
HphI GGTGA 1 cut(s) 35
Hpy166II GTNNAC 4 cut(s) 109, 160, 511, 595
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 3 cut(s) 340, 575, 581
Hpy8I GTNNAC 4 cut(s) 109, 160, 511, 595
Hpy99I CGWCG 4 cut(s) 49, 221, 278, 593
HpyCH4III ACNGT 3 cut(s) 177, 217, 408
HpyCH4IV ACGT 2 cut(s) 143, 591
HpyCH4V TGCA 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 124
HpyF3I CTNAG 2 cut(s) 11, 119
HpySE526I ACGT 2 cut(s) 143, 591
Hsp92I GRCGYC 2 cut(s) 44, 415
Hsp92II CATG 5 cut(s) 100, 271, 343, 501, 615
HspAI GCGC 1 cut(s) 630
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 6 cut(s) 79, 93, 135, 303, 326, 577
LguI GCTCTTC 1 cut(s) 449
LmnI GCTCC 1 cut(s) 395
Lsp1109I GCAGC 2 cut(s) 480, 553
LweI GCATC 1 cut(s) 460
MaeII ACGT 2 cut(s) 143, 591
MaeIII GTNAC 5 cut(s) 319, 364, 382, 449, 531
MalI GATC 6 cut(s) 81, 95, 137, 305, 328, 579
MboI GATC 6 cut(s) 79, 93, 135, 303, 326, 577
MboII GAAGA 6 cut(s) 38, 41, 89, 130, 371, 436
MflI RGATCY 1 cut(s) 326
MhlI GDGCHC 2 cut(s) 400, 513
MluCI AATT 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 27, 544
MnlI CCTC 6 cut(s) 64, 191, 248, 287, 355, 367
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 188
MvnI CGCG 1 cut(s) 630
MwoI GCNNNNNNNGC 2 cut(s) 41, 124
NcoI CCATGG 1 cut(s) 611
NdeII GATC 6 cut(s) 79, 93, 135, 303, 326, 577
NlaIII CATG 5 cut(s) 100, 271, 343, 501, 615
NlaIV GGNNCC 2 cut(s) 170, 214
NmuCI GTSAC 3 cut(s) 364, 382, 531
PaeR7I CTCGAG 1 cut(s) 617
PagI TCATGA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 3 cut(s) 140, 270, 279
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 3 cut(s) 284, 347, 571
PkrI GCNGC 5 cut(s) 43, 90, 495, 568, 629
Ppu21I YACGTR 1 cut(s) 144
PspN4I GGNNCC 2 cut(s) 170, 214
PspPI GGNCC 2 cut(s) 168, 432
PspXI VCTCGAGB 1 cut(s) 617
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 3 cut(s) 146, 152, 161
RsaNI GTAC 3 cut(s) 145, 151, 160
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 449
SatI GCNGC 5 cut(s) 42, 89, 494, 567, 628
Sau3AI GATC 6 cut(s) 79, 93, 135, 303, 326, 577
Sau96I GGNCC 2 cut(s) 168, 432
SduI GDGCHC 2 cut(s) 400, 513
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 250, 289
Sfr274I CTCGAG 1 cut(s) 617
SlaI CTCGAG 1 cut(s) 617
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 371, 488, 617
SmoI CTYRAG 3 cut(s) 371, 488, 617
Sse9I AATT 1 cut(s) 5
SsiI CCGC 3 cut(s) 41, 89, 628
StyI CCWWGG 1 cut(s) 611
TaaI ACNGT 3 cut(s) 177, 217, 408
TaiI ACGT 2 cut(s) 146, 594
TaqI TCGA 3 cut(s) 134, 282, 618
TasI AATT 1 cut(s) 5
TauI GCSGC 3 cut(s) 44, 91, 630
TfiI GAWTC 3 cut(s) 284, 347, 571
TscAI CASTG 2 cut(s) 405, 411
TseFI GTSAC 3 cut(s) 364, 382, 531
TseI GCWGC 2 cut(s) 493, 566
Tsp45I GTSAC 3 cut(s) 364, 382, 531
TspDTI ATGAA 1 cut(s) 415
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 2 cut(s) 405, 411
VneI GTGCAC 1 cut(s) 509
XapI RAATTY 1 cut(s) 5
XhoI CTCGAG 1 cut(s) 617
XmiI GTMKAC 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.