Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0011920

Physical Location & Seq

Genomic Coordinates Reverse (-)

260743 .. 261795

Gene Structure 1053 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1002300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAACTGGAAGGAATCAGTAAGATAGAAGAAGAAGAAGAAGAAAGCTGCGGCGGCGGAGGACGAGGGGGTGAGATTGAGAAGGTAAATTTGTCGTCGTCGGCGGCGTTGGAGATAGAGTACTTGAGCTATGGAGGAGAAGAGCACCTGCCTCTAATTATGGGCCTGGTGGACCAAGAACTGAGTGAGCCGTACTCCATCTTCACCTATCGGTACTTCGTGTATCTGTGGCCGCAGCTCTGTTTCATGGCGTTCCACGGAGGCAGGTGCGTGGGGACGGTGGTGTGCAAGATGGGGGAGCACCGCAACACCTACAGAGGGTACATCGCTATGCTCGTCGTCATCAAACCCTACAGAGGCAAAGGCATCGCCACCCAACTAGTTACCAGATCTATCCAAGTCATGAGGGAATCTGGCTGCGAAGAGGTAACGTTGGAGGCGGAAGTGACAAATAAAGGAGCGCTGGCGCTGTACGGGCGTCTTGGATTTATACGGGCAAAGAGGCTATTCCGGTACTACTTGAACGGCGTGGATGCTTTCCGTCTGAAGCTGCTGTTTCCCCGCCCTCCTTACTCTCTTCCTTCCCAATCCCAGCCTAATAATTACAGCATGGCCATGGCCATTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031417 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

211

Amino Acids

23.67

Weight (kDa)

5.55

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	59 - 163	1e-21	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	80 - 164	1.4e-11	Acetyltransferase (GNAT) domain
Acetyltransf_10	PF13673	80 - 169	9e-10	Acetyltransferase (GNAT) domain
FR47	PF08445	103 - 166	1.2e-06	FR47-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38130 AT2G38130
fragaria_vesca	FvH4_6g54330
malus_domestica	MD09G1002300.v1.1
prunus_persica	Prupe.3G313900_v2.0.a1
pyrus_communis	pycom111g00180 pycom17g00210
rosa_chinensis	RchiOBHm_Chr2g0176551
rosa_laevigata	RLG00000022422
rosa_multiflora	Rmu_co8099318.1_g000001 Rmu_sc0001417.1_g000008 Rmu_sc0011904.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076310
rosa_rugosa	Rorug02G0596100
rosa_samantha	Rh2AG673900 Rh2BG685100 Rh2CG648100 Rh2DG699000
rosa_wichuraiana	Rw2G055280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	156, 255
Acc36I	ACCTGC	2 cut(s)	156, 255
AciI	CCGC	8 cut(s)	51, 54, 57, 104, 233, 304, 440, 562
AclI	AACGTT	1 cut(s)	431
AcoI	YGGCCR	3 cut(s)	230, 612, 618
AcsI	RAATTY	1 cut(s)	88
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	478
AfaI	GTAC	6 cut(s)	122, 194, 215, 323, 473, 515
AfeI	AGCGCT	1 cut(s)	462
AfiI	CCNNNNNNNGG	2 cut(s)	318, 356
AgsI	TTSAA	2 cut(s)	523, 626
AhlI	ACTAGT	1 cut(s)	379
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	4 cut(s)	48, 129, 238, 550
AluI	AGCT	4 cut(s)	48, 129, 238, 550
Alw21I	GWGCWC	2 cut(s)	147, 303
Aor51HI	AGCGCT	1 cut(s)	462
AoxI	GGCC	4 cut(s)	163, 230, 612, 618
ApeKI	GCWGC	4 cut(s)	48, 235, 417, 550
ApoI	RAATTY	1 cut(s)	88
AspLEI	GCGC	2 cut(s)	463, 469
AspS9I	GGNCC	2 cut(s)	163, 172
AsuHPI	GGTGA	2 cut(s)	83, 196
AvaII	GGWCC	1 cut(s)	172
BalI	TGGCCA	2 cut(s)	614, 620
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
Bbv12I	GWGCWC	2 cut(s)	147, 303
BbvI	GCAGC	4 cut(s)	35, 247, 404, 537
BccI	CCATC	2 cut(s)	206, 286
BceAI	ACGGC	2 cut(s)	175, 541
BcgI	CGANNNNNNTGC	2 cut(s)	349, 383
BciT130I	CCWGG	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	379
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	2 cut(s)	313, 352
BfoI	RGCGCY	2 cut(s)	464, 470
BfuAI	ACCTGC	2 cut(s)	156, 255
BglII	AGATCT	1 cut(s)	389
BisI	GCNGC	8 cut(s)	49, 52, 55, 105, 233, 236, 418, 551
BlsI	GCNGC	8 cut(s)	50, 53, 56, 106, 234, 237, 419, 552
BmcAI	AGTACT	1 cut(s)	122
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	163, 172
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	375, 523
BplI	GAGNNNNNCTC	2 cut(s)	179, 211
BpuEI	CTTGAG	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	256, 615
BsaWI	WCCGGW	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 356
Bse1I	ACTGG	1 cut(s)	12
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	2 cut(s)	256, 615
BseGI	GGATG	1 cut(s)	538
BseLI	CCNNNNNNNGG	2 cut(s)	318, 356
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	4 cut(s)	35, 247, 404, 537
BseYI	CCCAGC	1 cut(s)	591
BshFI	GGCC	4 cut(s)	165, 232, 614, 620
BsiHKAI	GWGCWC	2 cut(s)	147, 303
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	289
BslI	CCNNNNNNNGG	2 cut(s)	318, 356
BsmFI	GGGAC	1 cut(s)	289
BsnI	GGCC	4 cut(s)	165, 232, 614, 620
Bsp1286I	GDGCHC	2 cut(s)	147, 303
Bsp143I	GATC	1 cut(s)	389
Bsp19I	CCATGG	1 cut(s)	615
BspACI	CCGC	8 cut(s)	51, 54, 57, 104, 233, 304, 440, 562
BspANI	GGCC	4 cut(s)	165, 232, 614, 620
BspCNI	CTCAG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	402
BspMI	ACCTGC	2 cut(s)	156, 255
BspQI	GCTCTTC	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	256, 615
BssMI	GATC	1 cut(s)	389
BssNI	GRCGYC	1 cut(s)	478
BssT1I	CCWWGG	1 cut(s)	615
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	3 cut(s)	135, 417, 582
BstACI	GRCGYC	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	182
BstDSI	CCRYGG	2 cut(s)	256, 615
BstF5I	GGATG	1 cut(s)	538
BstH2I	RGCGCY	2 cut(s)	464, 470
BstHHI	GCGC	2 cut(s)	463, 469
BstKTI	GATC	1 cut(s)	392
BstMBI	GATC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 475
BstNI	CCWGG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	2 cut(s)	313, 352
BstV1I	GCAGC	4 cut(s)	35, 247, 404, 537
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	165, 232, 614, 620
BtgI	CCRYGG	2 cut(s)	256, 615
BtgZI	GCGATG	2 cut(s)	310, 352
BtsCI	GGATG	1 cut(s)	538
BveI	ACCTGC	2 cut(s)	156, 255
Cac8I	GCNNGC	1 cut(s)	465
CciI	TCATGA	1 cut(s)	402
CfoI	GCGC	2 cut(s)	463, 469
Cfr13I	GGNCC	2 cut(s)	163, 172
CseI	GACGC	1 cut(s)	467
Csp6I	GTAC	6 cut(s)	121, 193, 214, 322, 472, 514
CviAII	CATG	4 cut(s)	247, 403, 610, 616
CviQI	GTAC	6 cut(s)	121, 193, 214, 322, 472, 514
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	391
DpnII	GATC	1 cut(s)	389
EaeI	YGGCCR	3 cut(s)	230, 612, 618
Eam1104I	CTCTTC	3 cut(s)	135, 417, 582
EarI	CTCTTC	3 cut(s)	135, 417, 582
EciI	GGCGGA	2 cut(s)	72, 455
Eco130I	CCWWGG	1 cut(s)	615
Eco47I	GGWCC	1 cut(s)	172
Eco47III	AGCGCT	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	566
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	4 cut(s)	250, 406, 613, 619
FaiI	YATR	8 cut(s)	132, 161, 248, 332, 404, 491, 611, 617
FaqI	GGGAC	1 cut(s)	289
FatI	CATG	4 cut(s)	246, 402, 609, 615
FauI	CCCGC	1 cut(s)	569
Fnu4HI	GCNGC	8 cut(s)	49, 52, 55, 105, 233, 236, 418, 551
FokI	GGATG	1 cut(s)	545
Fsp4HI	GCNGC	8 cut(s)	49, 52, 55, 105, 233, 236, 418, 551
FspBI	CTAG	1 cut(s)	380
GlaI	GCGC	2 cut(s)	462, 468
GluI	GCNGC	8 cut(s)	49, 52, 55, 105, 233, 236, 418, 551
GsaI	CCCAGC	1 cut(s)	595
HaeII	RGCGCY	2 cut(s)	464, 470
HaeIII	GGCC	4 cut(s)	165, 232, 614, 620
HapII	CCGG	1 cut(s)	511
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	463, 469
Hin1I	GRCGYC	1 cut(s)	478
Hin1II	CATG	4 cut(s)	250, 406, 613, 619
Hin6I	GCGC	2 cut(s)	461, 467
HinP1I	GCGC	2 cut(s)	461, 467
HinfI	GANTC	2 cut(s)	15, 410
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	2 cut(s)	83, 196
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	546
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	3 cut(s)	100, 103, 341
HpyAV	CCTTC	3 cut(s)	5, 76, 591
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 475
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	431
Hsp92I	GRCGYC	1 cut(s)	478
Hsp92II	CATG	4 cut(s)	250, 406, 613, 619
HspAI	GCGC	2 cut(s)	461, 467
Kzo9I	GATC	1 cut(s)	389
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	298, 458
LpnPI	CCDG	9 cut(s)	152, 161, 179, 250, 399, 400, 449, 524, 605
Lsp1109I	GCAGC	4 cut(s)	35, 247, 404, 537
LweI	GCATC	2 cut(s)	375, 523
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	3 cut(s)	382, 427, 445
MalI	GATC	1 cut(s)	391
MboI	GATC	1 cut(s)	389
MboII	GAAGA	9 cut(s)	41, 44, 47, 50, 53, 152, 193, 434, 569
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	147, 303
MlsI	TGGCCA	2 cut(s)	614, 620
MluCI	AATT	3 cut(s)	88, 156, 601
MluNI	TGGCCA	2 cut(s)	614, 620
MmeI	TCCRAC	2 cut(s)	90, 414
Mox20I	TGGCCA	2 cut(s)	614, 620
MscI	TGGCCA	2 cut(s)	614, 620
MslI	CAYNNNNRTG	2 cut(s)	329, 614
Msp20I	TGGCCA	2 cut(s)	614, 620
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	54, 475
NcoI	CCATGG	1 cut(s)	615
NdeII	GATC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	250, 406, 613, 619
NmuCI	GTSAC	1 cut(s)	445
PagI	TCATGA	1 cut(s)	402
PaqCI	CACCTGC	2 cut(s)	156, 255
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	2 cut(s)	104, 333
PfeI	GAWTC	2 cut(s)	15, 410
PkrI	GCNGC	8 cut(s)	50, 53, 56, 106, 234, 237, 419, 552
Psp1406I	AACGTT	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	165
PspFI	CCCAGC	1 cut(s)	591
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	163, 172
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	6 cut(s)	122, 194, 215, 323, 473, 515
RsaNI	GTAC	6 cut(s)	121, 193, 214, 322, 472, 514
RseI	CAYNNNNRTG	2 cut(s)	329, 614
SapI	GCTCTTC	1 cut(s)	135
SatI	GCNGC	8 cut(s)	49, 52, 55, 105, 233, 236, 418, 551
Sau3AI	GATC	1 cut(s)	389
Sau96I	GGNCC	2 cut(s)	163, 172
ScaI	AGTACT	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	2 cut(s)	147, 303
SfaNI	GCATC	2 cut(s)	375, 523
SfcI	CTRYAG	2 cut(s)	313, 352
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	329, 614
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SpeI	ACTAGT	1 cut(s)	379
Sse9I	AATT	3 cut(s)	88, 156, 601
SsiI	CCGC	8 cut(s)	51, 54, 57, 104, 233, 304, 440, 562
SspMI	CTAG	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	434
TasI	AATT	3 cut(s)	88, 156, 601
TatI	WGTACW	1 cut(s)	120
TauI	GCSGC	4 cut(s)	54, 57, 107, 235
TfiI	GAWTC	2 cut(s)	15, 410
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	4 cut(s)	48, 235, 417, 550
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	1 cut(s)	235
TspGWI	ACGGA	2 cut(s)	273, 530
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	88
XspI	CTAG	1 cut(s)	380
ZrmI	AGTACT	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.