RLG00000022422

N-alpha-acetyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011920
Physical Location & Seq
Forward (+)
83230896 .. 83231544
649 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022422

Sequence Viewer

Length: 564 bp
ATGGAATTCCTTAGTAAGAAAGATGAAGAAGAAGCGTGGGCGGCGTCGGAGATAGAGTATGTGAGCTATGAGGGAGAAGATCATCTGCCGCTGATCATGGGGCTGGTGGACAAAGAGCTGAGCGAGCCATACTCGATCTTCACGTACAGGTACTTCGTGTACCTGTGGCCTCAACTGTGTTTTCTGGCATTCCACAGAGGCAAGTGTGTGGGAACCGTCGTCTGTAAGATGGGGGAACATCGCAACACCTACAGAGGCTACATCGCCATGCTCGTCGTCATCGATTCCTACAGAGGTAAAGGGATCGCTACTCAACTCGTTACCAGATCTATTCAAGTCATGATGGAATCAGGTTGCGAAGAGGTGACACTTGAGGCAGAAGTGACGAATAAAGGAGCGCTGGCACTGTATGGGCGTCTTGGGTTCATAAGGGCCAAAAGGCTCTTCCGTTACTACTTGAACGGCGTTGATGCTTTCCGTCTCAAGCTGCTATTTCCCCGCCCAGATTTGCATTCCCCGACTTCCCCTTCCCCTTCCCCTTCCCCTTATATGAGGCTCGATTGA

Protein Analysis

188

Amino Acids

21.5

Weight (kDa)

6.44

Isoelectric Point (pI)

34.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_1 PF00583 38 - 142 6.2e-21 Acetyltransferase (GNAT) family
Acetyltransf_7 PF13508 59 - 143 1.4e-11 Acetyltransferase (GNAT) domain
Acetyltransf_10 PF13673 59 - 149 3.3e-09 Acetyltransferase (GNAT) domain
FR47 PF08445 82 - 145 4.1e-07 FR47-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011920)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38130 AT2G38130
fragaria_vesca FvH4_6g54330
malus_domestica MD09G1002300.v1.1
prunus_persica Prupe.3G313900_v2.0.a1
pyrus_communis pycom111g00180 pycom17g00210
rosa_chinensis RchiOBHm_Chr2g0176551
rosa_laevigata RLG00000022422
rosa_multiflora Rmu_co8099318.1_g000001 Rmu_sc0001417.1_g000008 Rmu_sc0011904.1_g000003
rosa_roxburghii Rroxscaffold_2G00076310
rosa_rugosa Rorug02G0596100
rosa_samantha Rh2AG673900 Rh2BG685100 Rh2CG648100 Rh2DG699000
rosa_wichuraiana Rw2G055280

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 41, 89, 499
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 44, 415
AfaI GTAC 3 cut(s) 146, 152, 161
AfeI AGCGCT 1 cut(s) 399
AgsI TTSAA 2 cut(s) 335, 460
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 3 cut(s) 66, 118, 487
AluI AGCT 3 cut(s) 66, 118, 487
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 1 cut(s) 311
Aor51HI AGCGCT 1 cut(s) 399
AoxI GGCC 2 cut(s) 167, 432
ApeKI GCWGC 1 cut(s) 487
ApoI RAATTY 1 cut(s) 5
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 1 cut(s) 432
AsuHPI GGTGA 1 cut(s) 376
BarI GAAGNNNNNNTAC 2 cut(s) 137, 169
BbvI GCAGC 1 cut(s) 474
BccI CCATC 2 cut(s) 223, 337
BceAI ACGGC 1 cut(s) 478
BclI TGATCA 1 cut(s) 93
BcoDI GTCTC 1 cut(s) 485
BfmI CTRYAG 2 cut(s) 250, 289
BfoI RGCGCY 1 cut(s) 401
BglII AGATCT 1 cut(s) 326
BisI GCNGC 3 cut(s) 42, 89, 488
BlpI GCTNAGC 1 cut(s) 119
BlsI GCNGC 3 cut(s) 43, 90, 489
BmgT120I GGNCC 1 cut(s) 432
BmiI GGNNCC 1 cut(s) 214
BmsI GCATC 1 cut(s) 460
BplI GAGNNNNNCTC 2 cut(s) 116, 148
Bpu1102I GCTNAGC 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 392, 467
Bsa29I ATCGAT 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 144
BsaHI GRCGYC 2 cut(s) 44, 415
BsaXI ACNNNNNCTCC 2 cut(s) 41, 71
BseCI ATCGAT 1 cut(s) 282
BseMII CTCAG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 474
BshFI GGCC 2 cut(s) 169, 434
BshVI ATCGAT 1 cut(s) 282
BsmAI GTCTC 1 cut(s) 485
BsmBI CGTCTC 1 cut(s) 485
BsmI GAATGC 2 cut(s) 188, 511
BsnI GGCC 2 cut(s) 169, 434
Bsp143I GATC 5 cut(s) 79, 93, 135, 303, 326
Bsp1720I GCTNAGC 1 cut(s) 119
BspACI CCGC 3 cut(s) 41, 89, 499
BspANI GGCC 2 cut(s) 169, 434
BspCNI CTCAG 1 cut(s) 111
BspDI ATCGAT 1 cut(s) 282
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 449
BssMI GATC 5 cut(s) 79, 93, 135, 303, 326
BssNI GRCGYC 2 cut(s) 44, 415
Bst4CI ACNGT 3 cut(s) 177, 217, 408
Bst6I CTCTTC 2 cut(s) 354, 449
BstACI GRCGYC 2 cut(s) 44, 415
BstBAI YACGTR 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 125, 402
BstDEI CTNAG 2 cut(s) 11, 119
BstH2I RGCGCY 1 cut(s) 401
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 5 cut(s) 82, 96, 138, 306, 329
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 5 cut(s) 79, 93, 135, 303, 326
BstMWI GCNNNNNNNGC 2 cut(s) 41, 124
BstSFI CTRYAG 2 cut(s) 250, 289
BstV1I GCAGC 1 cut(s) 474
BstX2I RGATCY 1 cut(s) 326
BstYI RGATCY 1 cut(s) 326
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 169, 434
BsuTUI ATCGAT 1 cut(s) 282
BtgZI GCGATG 2 cut(s) 224, 247
BtsIMutI CAGTG 1 cut(s) 404
Cac8I GCNNGC 2 cut(s) 125, 402
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 432
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 2 cut(s) 33, 404
Csp6I GTAC 3 cut(s) 145, 151, 160
CviAII CATG 3 cut(s) 97, 268, 340
CviQI GTAC 3 cut(s) 145, 151, 160
DdeI CTNAG 2 cut(s) 11, 119
DpnI GATC 5 cut(s) 81, 95, 137, 305, 328
DpnII GATC 5 cut(s) 79, 93, 135, 303, 326
Eam1104I CTCTTC 2 cut(s) 354, 449
EarI CTCTTC 2 cut(s) 354, 449
Eco47III AGCGCT 1 cut(s) 399
EcoRI GAATTC 1 cut(s) 5
Esp3I CGTCTC 1 cut(s) 485
FaeI CATG 3 cut(s) 100, 271, 343
FatI CATG 3 cut(s) 96, 267, 339
FauI CCCGC 1 cut(s) 506
FbaI TGATCA 1 cut(s) 93
Fnu4HI GCNGC 3 cut(s) 42, 89, 488
Fsp4HI GCNGC 3 cut(s) 42, 89, 488
GlaI GCGC 1 cut(s) 399
GluI GCNGC 3 cut(s) 42, 89, 488
HaeII RGCGCY 1 cut(s) 401
HaeIII GGCC 2 cut(s) 169, 434
HgaI GACGC 2 cut(s) 33, 404
HhaI GCGC 1 cut(s) 400
Hin1I GRCGYC 2 cut(s) 44, 415
Hin1II CATG 3 cut(s) 100, 271, 343
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HinfI GANTC 2 cut(s) 284, 347
HphI GGTGA 1 cut(s) 376
Hpy166II GTNNAC 2 cut(s) 109, 160
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 1 cut(s) 340
Hpy8I GTNNAC 2 cut(s) 109, 160
Hpy99I CGWCG 3 cut(s) 49, 221, 278
HpyAV CCTTC 3 cut(s) 537, 543, 549
HpyCH4III ACNGT 3 cut(s) 177, 217, 408
HpyCH4IV ACGT 1 cut(s) 143
HpyCH4V TGCA 1 cut(s) 511
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 124
HpyF3I CTNAG 2 cut(s) 11, 119
HpySE526I ACGT 1 cut(s) 143
Hsp92I GRCGYC 2 cut(s) 44, 415
Hsp92II CATG 3 cut(s) 100, 271, 343
HspAI GCGC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 5 cut(s) 79, 93, 135, 303, 326
LguI GCTCTTC 1 cut(s) 449
LmnI GCTCC 1 cut(s) 395
LpnPI CCDG 8 cut(s) 89, 133, 170, 176, 336, 337, 386, 516
Lsp1109I GCAGC 1 cut(s) 474
LweI GCATC 1 cut(s) 460
MaeII ACGT 1 cut(s) 143
MaeIII GTNAC 4 cut(s) 319, 364, 382, 449
MalI GATC 5 cut(s) 81, 95, 137, 305, 328
MboI GATC 5 cut(s) 79, 93, 135, 303, 326
MboII GAAGA 6 cut(s) 38, 41, 89, 130, 371, 436
MflI RGATCY 1 cut(s) 326
MluCI AATT 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 27
MnlI CCTC 8 cut(s) 64, 180, 191, 248, 287, 355, 367, 546
MslI CAYNNNNRTG 1 cut(s) 266
MspA1I CMGCKG 1 cut(s) 91
Mva1269I GAATGC 2 cut(s) 188, 511
MwoI GCNNNNNNNGC 2 cut(s) 41, 124
NdeII GATC 5 cut(s) 79, 93, 135, 303, 326
NlaIII CATG 3 cut(s) 100, 271, 343
NlaIV GGNNCC 1 cut(s) 214
NmuCI GTSAC 2 cut(s) 364, 382
PagI TCATGA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 449
PcsI WCGNNNNNNNCGW 3 cut(s) 140, 270, 279
PctI GAATGC 2 cut(s) 188, 511
PfeI GAWTC 2 cut(s) 284, 347
PkrI GCNGC 3 cut(s) 43, 90, 489
Ppu21I YACGTR 1 cut(s) 144
PspN4I GGNNCC 1 cut(s) 214
PspPI GGNCC 1 cut(s) 432
PsuI RGATCY 1 cut(s) 326
RsaI GTAC 3 cut(s) 146, 152, 161
RsaNI GTAC 3 cut(s) 145, 151, 160
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 449
SatI GCNGC 3 cut(s) 42, 89, 488
Sau3AI GATC 5 cut(s) 79, 93, 135, 303, 326
Sau96I GGNCC 1 cut(s) 432
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 2 cut(s) 250, 289
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 2 cut(s) 371, 482
SmoI CTYRAG 2 cut(s) 371, 482
Sse9I AATT 1 cut(s) 5
SsiI CCGC 3 cut(s) 41, 89, 499
TaaI ACNGT 3 cut(s) 177, 217, 408
TaiI ACGT 1 cut(s) 146
TaqI TCGA 3 cut(s) 134, 282, 558
TasI AATT 1 cut(s) 5
TauI GCSGC 2 cut(s) 44, 91
TfiI GAWTC 2 cut(s) 284, 347
TscAI CASTG 1 cut(s) 411
TseFI GTSAC 2 cut(s) 364, 382
TseI GCWGC 1 cut(s) 487
Tsp45I GTSAC 2 cut(s) 364, 382
TspDTI ATGAA 2 cut(s) 39, 415
TspGWI ACGGA 2 cut(s) 437, 467
TspRI CASTG 1 cut(s) 411
XapI RAATTY 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.