Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0011920

Physical Location & Seq

Genomic Coordinates Reverse (-)

158200 .. 158940

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGAACCGGAAGGAATCAGTAAGAAAGAAGAAGAAGAAGAAGAAGAAAGCGGCGGCGGCGGAGGAGGAGGGGGTGAGATTGACAAGGTACATTTGTCGTCGTCGGCGGCGTTGGAGATAGAGTACTTGAGCTATGGAGGAGAAGAGCACCTGCCTCTAATAATGGGCCTGGTGGACCAAGAACTGAGCGAGCCGTACTCCATCTTCACCTATCGGTACTTCGTGTATCTGTGGCCGCAGCTCTGTTTCATGGCGTTCCACGGAGGCAGGTGCGTGGGGACAGTGGTGTGCAAGATGGGGGAGCACCGCAACACCTACAGAGGGTACATCGCTATGCTCGTCGTCATCAAACCCTACAGAGGCAAAGGCATCGCCACCCAACTAGTTAGCAGATCTATCCAAGTCATGAAGGAATCTGGCTGCGAAGAGGTAACGCTGGAGGCGGAAGTGACAAATAAAGGAGCGCTGGCGCTGTACGGGCGTCTTGGATTTATACGGGCAAAGAGGCTATTCCGGTACTACTTGAACGGCGTGGATGCTTTCCGTCTGAAGCTGCTGTTTCCTCGCCCTCTTTACTCTCTTCCTTCCCAATCCCAGCCTAATAATTACAGCATGGCCATGGCCATTGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004596 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006473 GO:0006474 GO:0006807 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0019538 GO:0031248 GO:0031365 GO:0031414 GO:0031417 GO:0032991 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051604 GO:0071704 GO:1901564 GO:1902493 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

212

Amino Acids

23.63

Weight (kDa)

5.51

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011920)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38130 AT2G38130
fragaria_vesca	FvH4_6g54330
malus_domestica	MD09G1002300.v1.1
prunus_persica	Prupe.3G313900_v2.0.a1
pyrus_communis	pycom111g00180 pycom17g00210
rosa_chinensis	RchiOBHm_Chr2g0176551
rosa_laevigata	RLG00000022422
rosa_multiflora	Rmu_co8099318.1_g000001 Rmu_sc0001417.1_g000008 Rmu_sc0011904.1_g000003
rosa_roxburghii	Rroxscaffold_2G00076310
rosa_rugosa	Rorug02G0596100
rosa_samantha	Rh2AG673900 Rh2BG685100 Rh2CG648100 Rh2DG699000
rosa_wichuraiana	Rw2G055280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	159, 258
Acc36I	ACCTGC	2 cut(s)	159, 258
AciI	CCGC	8 cut(s)	51, 54, 57, 60, 107, 236, 307, 443
AcoI	YGGCCR	3 cut(s)	233, 615, 621
AcuI	CTGAAG	1 cut(s)	569
AcyI	GRCGYC	1 cut(s)	481
AfaI	GTAC	7 cut(s)	90, 125, 197, 218, 326, 476, 518
AfeI	AGCGCT	1 cut(s)	465
AfiI	CCNNNNNNNGG	2 cut(s)	321, 359
AgsI	TTSAA	2 cut(s)	526, 629
AhlI	ACTAGT	1 cut(s)	382
AjnI	CCWGG	1 cut(s)	168
AluBI	AGCT	3 cut(s)	132, 241, 553
AluI	AGCT	3 cut(s)	132, 241, 553
Alw21I	GWGCWC	2 cut(s)	150, 306
Aor51HI	AGCGCT	1 cut(s)	465
AoxI	GGCC	4 cut(s)	166, 233, 615, 621
ApeKI	GCWGC	3 cut(s)	238, 420, 553
AspLEI	GCGC	2 cut(s)	466, 472
AspS9I	GGNCC	2 cut(s)	166, 175
AsuHPI	GGTGA	2 cut(s)	86, 199
AvaII	GGWCC	1 cut(s)	175
BaeI	ACNNNNGTAYC	2 cut(s)	80, 113
BalI	TGGCCA	2 cut(s)	617, 623
BarI	GAAGNNNNNNTAC	2 cut(s)	188, 220
Bbv12I	GWGCWC	2 cut(s)	150, 306
BbvI	GCAGC	3 cut(s)	250, 407, 540
BccI	CCATC	2 cut(s)	209, 289
BceAI	ACGGC	2 cut(s)	178, 544
BcgI	CGANNNNNNTGC	2 cut(s)	352, 386
BciT130I	CCWGG	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	382
BfaI	CTAG	1 cut(s)	383
BfmI	CTRYAG	2 cut(s)	316, 355
BfoI	RGCGCY	2 cut(s)	467, 473
BfuAI	ACCTGC	2 cut(s)	159, 258
BglII	AGATCT	1 cut(s)	392
BisI	GCNGC	8 cut(s)	52, 55, 58, 108, 236, 239, 421, 554
BlsI	GCNGC	8 cut(s)	53, 56, 59, 109, 237, 240, 422, 555
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	1 cut(s)	170
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	166, 175
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	170
BmsI	GCATC	2 cut(s)	378, 526
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
BpmI	CTGGAG	1 cut(s)	458
BpuEI	CTTGAG	1 cut(s)	148
BsaHI	GRCGYC	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	259, 618
BsaWI	WCCGGW	2 cut(s)	7, 513
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 359
BseBI	CCWGG	1 cut(s)	170
BseDI	CCNNGG	2 cut(s)	259, 618
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	2 cut(s)	321, 359
BseMII	CTCAG	1 cut(s)	176
BseRI	GAGGAG	3 cut(s)	78, 81, 153
BseXI	GCAGC	3 cut(s)	250, 407, 540
BseYI	CCCAGC	1 cut(s)	594
BshFI	GGCC	4 cut(s)	168, 235, 617, 623
BsiHKAI	GWGCWC	2 cut(s)	150, 306
BsiSI	CCGG	2 cut(s)	8, 514
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	321, 359
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	4 cut(s)	168, 235, 617, 623
Bsp1286I	GDGCHC	2 cut(s)	150, 306
Bsp143I	GATC	1 cut(s)	392
Bsp19I	CCATGG	1 cut(s)	618
BspACI	CCGC	8 cut(s)	51, 54, 57, 60, 107, 236, 307, 443
BspANI	GGCC	4 cut(s)	168, 235, 617, 623
BspCNI	CTCAG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	2 cut(s)	159, 258
BspQI	GCTCTTC	1 cut(s)	138
BssECI	CCNNGG	2 cut(s)	259, 618
BssMI	GATC	1 cut(s)	392
BssNI	GRCGYC	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	618
Bst2UI	CCWGG	1 cut(s)	170
Bst4CI	ACNGT	1 cut(s)	283
Bst6I	CTCTTC	3 cut(s)	138, 420, 585
BstACI	GRCGYC	1 cut(s)	481
BstC8I	GCNNGC	2 cut(s)	191, 468
BstDEI	CTNAG	1 cut(s)	185
BstDSI	CCRYGG	2 cut(s)	259, 618
BstF5I	GGATG	1 cut(s)	541
BstH2I	RGCGCY	2 cut(s)	467, 473
BstHHI	GCGC	2 cut(s)	466, 472
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 478
BstNI	CCWGG	1 cut(s)	170
BstSCI	CCNGG	1 cut(s)	168
BstSFI	CTRYAG	2 cut(s)	316, 355
BstV1I	GCAGC	3 cut(s)	250, 407, 540
BstX2I	RGATCY	1 cut(s)	392
BstYI	RGATCY	1 cut(s)	392
BsuRI	GGCC	4 cut(s)	168, 235, 617, 623
BtgI	CCRYGG	2 cut(s)	259, 618
BtgZI	GCGATG	2 cut(s)	313, 355
BtsCI	GGATG	1 cut(s)	541
BtsIMutI	CAGTG	1 cut(s)	288
BveI	ACCTGC	2 cut(s)	159, 258
Cac8I	GCNNGC	2 cut(s)	191, 468
CciI	TCATGA	1 cut(s)	405
CfoI	GCGC	2 cut(s)	466, 472
Cfr13I	GGNCC	2 cut(s)	166, 175
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	7 cut(s)	89, 124, 196, 217, 325, 475, 517
CviAII	CATG	4 cut(s)	250, 406, 613, 619
CviQI	GTAC	7 cut(s)	89, 124, 196, 217, 325, 475, 517
DdeI	CTNAG	1 cut(s)	185
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
EaeI	YGGCCR	3 cut(s)	233, 615, 621
Eam1104I	CTCTTC	3 cut(s)	138, 420, 585
EarI	CTCTTC	3 cut(s)	138, 420, 585
EciI	GGCGGA	2 cut(s)	75, 458
Eco130I	CCWWGG	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	175
Eco47III	AGCGCT	1 cut(s)	465
Eco57I	CTGAAG	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	618
ErhI	CCWWGG	1 cut(s)	618
FaeI	CATG	4 cut(s)	253, 409, 616, 622
FaiI	YATR	7 cut(s)	135, 251, 335, 407, 494, 614, 620
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	4 cut(s)	249, 405, 612, 618
Fnu4HI	GCNGC	8 cut(s)	52, 55, 58, 108, 236, 239, 421, 554
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	8 cut(s)	52, 55, 58, 108, 236, 239, 421, 554
FspBI	CTAG	1 cut(s)	383
GlaI	GCGC	2 cut(s)	465, 471
GluI	GCNGC	8 cut(s)	52, 55, 58, 108, 236, 239, 421, 554
GsaI	CCCAGC	1 cut(s)	598
GsuI	CTGGAG	1 cut(s)	458
HaeII	RGCGCY	2 cut(s)	467, 473
HaeIII	GGCC	4 cut(s)	168, 235, 617, 623
HapII	CCGG	2 cut(s)	8, 514
HgaI	GACGC	1 cut(s)	470
HhaI	GCGC	2 cut(s)	466, 472
Hin1I	GRCGYC	1 cut(s)	481
Hin1II	CATG	4 cut(s)	253, 409, 616, 622
Hin6I	GCGC	2 cut(s)	464, 470
HinP1I	GCGC	2 cut(s)	464, 470
HinfI	GANTC	2 cut(s)	15, 413
HpaII	CCGG	2 cut(s)	8, 514
HphI	GGTGA	2 cut(s)	86, 199
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	549
Hpy188III	TCNNGA	1 cut(s)	406
Hpy8I	GTNNAC	1 cut(s)	175
Hpy99I	CGWCG	3 cut(s)	103, 106, 344
HpyAV	CCTTC	3 cut(s)	5, 403, 594
HpyCH4III	ACNGT	1 cut(s)	283
HpyCH4V	TGCA	1 cut(s)	291
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 478
HpyF3I	CTNAG	1 cut(s)	185
Hsp92I	GRCGYC	1 cut(s)	481
Hsp92II	CATG	4 cut(s)	253, 409, 616, 622
HspAI	GCGC	2 cut(s)	464, 470
Kzo9I	GATC	1 cut(s)	392
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	2 cut(s)	301, 461
Lsp1109I	GCAGC	3 cut(s)	250, 407, 540
LweI	GCATC	2 cut(s)	378, 526
MaeI	CTAG	1 cut(s)	383
MaeIII	GTNAC	2 cut(s)	430, 448
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MflI	RGATCY	1 cut(s)	392
MhlI	GDGCHC	2 cut(s)	150, 306
MlsI	TGGCCA	2 cut(s)	617, 623
MluCI	AATT	1 cut(s)	604
MluNI	TGGCCA	2 cut(s)	617, 623
MmeI	TCCRAC	1 cut(s)	93
Mox20I	TGGCCA	2 cut(s)	617, 623
MscI	TGGCCA	2 cut(s)	617, 623
MslI	CAYNNNNRTG	2 cut(s)	332, 617
Msp20I	TGGCCA	2 cut(s)	617, 623
MspI	CCGG	2 cut(s)	8, 514
MspR9I	CCNGG	1 cut(s)	170
MvaI	CCWGG	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	57, 478
NcoI	CCATGG	1 cut(s)	618
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	4 cut(s)	253, 409, 616, 622
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	448
PagI	TCATGA	1 cut(s)	405
PaqCI	CACCTGC	2 cut(s)	159, 258
PciSI	GCTCTTC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	2 cut(s)	107, 336
PfeI	GAWTC	2 cut(s)	15, 413
PkrI	GCNGC	8 cut(s)	53, 56, 59, 109, 237, 240, 422, 555
Psp6I	CCWGG	1 cut(s)	168
PspFI	CCCAGC	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	166, 175
PsuI	RGATCY	1 cut(s)	392
RsaI	GTAC	7 cut(s)	90, 125, 197, 218, 326, 476, 518
RsaNI	GTAC	7 cut(s)	89, 124, 196, 217, 325, 475, 517
RseI	CAYNNNNRTG	2 cut(s)	332, 617
SapI	GCTCTTC	1 cut(s)	138
SatI	GCNGC	8 cut(s)	52, 55, 58, 108, 236, 239, 421, 554
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	2 cut(s)	166, 175
ScaI	AGTACT	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	150, 306
SetI	ASST	9 cut(s)	90, 134, 153, 212, 243, 272, 317, 432, 555
SfaNI	GCATC	2 cut(s)	378, 526
SfcI	CTRYAG	2 cut(s)	316, 355
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	2 cut(s)	332, 617
SmlI	CTYRAG	1 cut(s)	127
SmoI	CTYRAG	1 cut(s)	127
SpeI	ACTAGT	1 cut(s)	382
Sse9I	AATT	1 cut(s)	604
SsiI	CCGC	8 cut(s)	51, 54, 57, 60, 107, 236, 307, 443
SspMI	CTAG	1 cut(s)	383
StyD4I	CCNGG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	618
TaaI	ACNGT	1 cut(s)	283
TasI	AATT	1 cut(s)	604
TatI	WGTACW	1 cut(s)	123
TauI	GCSGC	5 cut(s)	54, 57, 60, 110, 238
TfiI	GAWTC	2 cut(s)	15, 413
TscAI	CASTG	1 cut(s)	288
TseFI	GTSAC	1 cut(s)	448
TseI	GCWGC	3 cut(s)	238, 420, 553
Tsp45I	GTSAC	1 cut(s)	448
TspDTI	ATGAA	2 cut(s)	238, 422
TspGWI	ACGGA	2 cut(s)	276, 533
TspRI	CASTG	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	175
XspI	CTAG	1 cut(s)	383
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.