Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014994

Physical Location & Seq

Genomic Coordinates Forward (+)

16049918 .. 16051356

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G38310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGCTTGCCGTTCACCGTCCTTCTTCCGCCGTATCAGACGGAGATTCCGTTCAGATTCCGATGATGATCGCGTCGTTTCAAAAACGTTTTCCTTCTCTCTCACGCGACTCCACGGCCGCTCGTTTTCACACACACGAGGTTGGTCCTAATCAGTGTTGCTCCGCCGTTATTCAAGAGATCTCCGCTCCAATCTCCACCGTTTGGTCCGTCGTACGCCGCTTTGATAACCCACAAGCTTACAAACACTTTCTCAAAAGCTGTAGCGTCATCGGCGGAGACGGCGATAACGTTGGTAGCCTCCGTCAAGTCCACGTCGTCTCTGGTCTCCCCGCCGCTAGCTCCACCGAGAGACTCGATATCCTCGACGACGAACGCCACGTCATCAGCTTCAGCGTTGTTGGTGGTGACCACCGGCTCTCTAACTACCGATCCGTAACGACCCTTCACCCTTCTCCGATCTCCGGGACCGTCGTTGTCGAGTCTTACGTCGTTGATGTTCCTCCAGGCAACACAAAGGAAGAGACTTGTGACTTCGTTGACGTTATCGTACGATGCAATCTTCAATCTCTTGCGAAAATAGCCGAGAATACTGCGGCTGAGAGCAAGAAGAAGATGTCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004857 GO:0004864 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0007154 GO:0007165 GO:0008150 GO:0008289 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009892 GO:0009987 GO:0010033 GO:0010427 GO:0010563 GO:0010605 GO:0010921 GO:0010923 GO:0019208 GO:0019212 GO:0019220 GO:0019222 GO:0019840 GO:0019888 GO:0023052 GO:0030234 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031406 GO:0032268 GO:0032269 GO:0032515 GO:0032870 GO:0033293 GO:0033993 GO:0035303 GO:0035304 GO:0035305 GO:0035308 GO:0036094 GO:0038023 GO:0042221 GO:0042562 GO:0042802 GO:0042803 GO:0043086 GO:0043167 GO:0043168 GO:0043177 GO:0043178 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043666 GO:0044092 GO:0044424 GO:0044464 GO:0045936 GO:0046983 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0098772 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

Polyketide_cyc2

Protein Analysis

207

Amino Acids

22.44

Weight (kDa)

6.43

Isoelectric Point (pI)

45.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Polyketide_cyc2	PF10604	58 - 195	1.2e-16	Polyketide cyclase / dehydrase and lipid transport
Bet_v_1	PF00407	77 - 137	2.2e-06	Pathogenesis-related protein Bet v 1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014994)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38310
fragaria_vesca	FvH4_6g10740
malus_domestica	MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica	Prupe.6G284000_v2.0.a1
pyrus_communis	pycom04g14710 pycom12g16880
rosa_chinensis	RchiOBHm_Chr3g0461781
rosa_laevigata	RLG00000024899
rosa_multiflora	Rmu_sc0004308.1_g000008
rosa_roxburghii	Rroxscaffold_6G00417950
rosa_rugosa	Rorug03G0053500
rosa_samantha	Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana	Rw3G009460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccBSI	CCGCTC	2 cut(s)	119, 185
AccII	CGCG	2 cut(s)	71, 105
AciI	CCGC	9 cut(s)	27, 117, 162, 183, 217, 273, 330, 333, 593
AclI	AACGTT	2 cut(s)	85, 288
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	1 cut(s)	114
AcuI	CTGAAG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	213, 549
AfiI	CCNNNNNNNGG	2 cut(s)	201, 461
AgsI	TTSAA	3 cut(s)	80, 173, 563
AjiI	CACGTC	2 cut(s)	313, 379
AjnI	CCWGG	1 cut(s)	502
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	4 cut(s)	236, 258, 339, 387
AluI	AGCT	4 cut(s)	236, 258, 339, 387
Alw26I	GTCTC	5 cut(s)	270, 322, 329, 343, 515
AlwI	GGATC	1 cut(s)	423
AoxI	GGCC	1 cut(s)	114
ArsI	GACNNNNNNTTYG	2 cut(s)	363, 395
AspS9I	GGNCC	3 cut(s)	143, 204, 465
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	3 cut(s)	5, 416, 437
AsuNHI	GCTAGC	1 cut(s)	335
AvaII	GGWCC	3 cut(s)	143, 204, 465
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BauI	CACGAG	1 cut(s)	134
BceAI	ACGGC	4 cut(s)	14, 129, 149, 295
BcgI	CGANNNNNNTGC	2 cut(s)	572, 606
BciT130I	CCWGG	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	5 cut(s)	270, 322, 329, 343, 515
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	259
BglII	AGATCT	1 cut(s)	177
BisI	GCNGC	4 cut(s)	117, 217, 333, 594
BlsI	GCNGC	4 cut(s)	118, 218, 334, 595
Bme1390I	CCNGG	2 cut(s)	463, 504
Bme18I	GGWCC	3 cut(s)	143, 204, 465
BmgBI	CACGTC	2 cut(s)	313, 379
BmgT120I	GGNCC	3 cut(s)	143, 204, 465
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	463, 504
BmsI	GCATC	1 cut(s)	542
BmtI	GCTAGC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	486
BpuMI	CCSGG	1 cut(s)	463
BsaBI	GATNNNNATC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	2 cut(s)	201, 461
Bse118I	RCCGGY	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	65
BseLI	CCNNNNNNNGG	2 cut(s)	201, 461
BseMII	CTCAG	1 cut(s)	588
BseX3I	CGGCCG	1 cut(s)	114
Bsh1236I	CGCG	2 cut(s)	71, 105
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	116
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	412, 462
BsiWI	CGTACG	2 cut(s)	211, 547
BslFI	GGGAC	1 cut(s)	478
BslI	CCNNNNNNNGG	2 cut(s)	201, 461
BsmAI	GTCTC	5 cut(s)	270, 322, 329, 343, 515
BsmBI	CGTCTC	2 cut(s)	270, 322
BsmFI	GGGAC	1 cut(s)	478
BsnI	GGCC	1 cut(s)	116
Bso31I	GGTCTC	1 cut(s)	329
Bsp143I	GATC	4 cut(s)	66, 177, 428, 456
BspACI	CCGC	9 cut(s)	27, 117, 162, 183, 217, 273, 330, 333, 593
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	1 cut(s)	589
BspFNI	CGCG	2 cut(s)	71, 105
BspLI	GGNNCC	1 cut(s)	466
BspOI	GCTAGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	423
BspTNI	GGTCTC	1 cut(s)	329
BsrBI	CCGCTC	2 cut(s)	119, 185
BsrFI	RCCGGY	1 cut(s)	411
BssAI	RCCGGY	1 cut(s)	411
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	4 cut(s)	66, 177, 428, 456
BssSI	CACGAG	1 cut(s)	134
Bst2BI	CACGAG	1 cut(s)	134
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	3 cut(s)	17, 199, 469
Bst6I	CTCTTC	1 cut(s)	513
BstC8I	GCNNGC	2 cut(s)	6, 337
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	1 cut(s)	111
BstEII	GGTNACC	1 cut(s)	404
BstFNI	CGCG	2 cut(s)	71, 105
BstKTI	GATC	4 cut(s)	69, 180, 431, 459
BstMAI	GTCTC	5 cut(s)	270, 322, 329, 343, 515
BstMBI	GATC	4 cut(s)	66, 177, 428, 456
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	3 cut(s)	270, 279, 578
BstNI	CCWGG	1 cut(s)	504
BstPI	GGTNACC	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	461, 502
BstSFI	CTRYAG	1 cut(s)	259
BstUI	CGCG	2 cut(s)	71, 105
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZI	CGGCCG	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	116
BtgI	CCRYGG	1 cut(s)	111
BtrI	CACGTC	2 cut(s)	313, 379
BtsIMutI	CAGTG	1 cut(s)	158
Cac8I	GCNNGC	2 cut(s)	6, 337
Cfr10I	RCCGGY	1 cut(s)	411
Cfr13I	GGNCC	3 cut(s)	143, 204, 465
CseI	GACGC	2 cut(s)	60, 253
Csp6I	GTAC	2 cut(s)	212, 548
CviJI	RGCY	9 cut(s)	116, 236, 258, 297, 339, 387, 415, 581, 596
CviKI_1	RGCY	9 cut(s)	116, 236, 258, 297, 339, 387, 415, 581, 596
CviQI	GTAC	2 cut(s)	212, 548
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	4 cut(s)	68, 179, 430, 458
DpnII	GATC	4 cut(s)	66, 177, 428, 456
EaeI	YGGCCR	1 cut(s)	114
EagI	CGGCCG	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	3 cut(s)	16, 151, 288
EclXI	CGGCCG	1 cut(s)	114
Eco31I	GGTCTC	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	358
Eco47I	GGWCC	3 cut(s)	143, 204, 465
Eco52I	CGGCCG	1 cut(s)	114
Eco57I	CTGAAG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	404
EcoO65I	GGTNACC	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	502
EcoRV	GATATC	1 cut(s)	358
Esp3I	CGTCTC	2 cut(s)	270, 322
FaqI	GGGAC	1 cut(s)	478
FauI	CCCGC	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	117, 217, 333, 594
Fsp4HI	GCNGC	4 cut(s)	117, 217, 333, 594
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	4 cut(s)	117, 217, 333, 594
GsuI	CTGGAG	1 cut(s)	486
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	2 cut(s)	412, 462
HgaI	GACGC	2 cut(s)	60, 253
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	234
HinfI	GANTC	5 cut(s)	44, 55, 107, 351, 479
HpaII	CCGG	2 cut(s)	412, 462
HphI	GGTGA	3 cut(s)	5, 416, 437
Hpy166II	GTNNAC	3 cut(s)	13, 310, 538
Hpy188I	TCNGA	4 cut(s)	37, 54, 60, 456
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	3 cut(s)	13, 310, 538
Hpy99I	CGWCG	7 cut(s)	76, 212, 317, 368, 371, 473, 491
HpyAV	CCTTC	4 cut(s)	30, 102, 452, 459
HpyCH4III	ACNGT	3 cut(s)	17, 199, 469
HpyCH4IV	ACGT	6 cut(s)	85, 288, 312, 378, 486, 540
HpyCH4V	TGCA	1 cut(s)	555
HpyF10VI	GCNNNNNNNGC	3 cut(s)	270, 279, 578
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	6 cut(s)	85, 288, 312, 378, 486, 540
Kzo9I	GATC	4 cut(s)	66, 177, 428, 456
LmnI	GCTCC	3 cut(s)	164, 190, 344
LpnPI	CCDG	5 cut(s)	306, 425, 475, 489, 516
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	1 cut(s)	336
MaeII	ACGT	6 cut(s)	85, 288, 312, 378, 486, 540
MaeIII	GTNAC	3 cut(s)	404, 433, 527
MalI	GATC	4 cut(s)	68, 179, 430, 458
MbiI	CCGCTC	2 cut(s)	119, 185
MboI	GATC	4 cut(s)	66, 177, 428, 456
MboII	GAAGA	5 cut(s)	15, 530, 551, 619, 622
MflI	RGATCY	1 cut(s)	177
MlyI	GAGTC	3 cut(s)	101, 345, 488
MnlI	CCTC	4 cut(s)	130, 308, 371, 510
MspI	CCGG	2 cut(s)	412, 462
MspR9I	CCNGG	2 cut(s)	463, 504
MvaI	CCWGG	1 cut(s)	504
MvnI	CGCG	2 cut(s)	71, 105
MwoI	GCNNNNNNNGC	3 cut(s)	270, 279, 578
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	4 cut(s)	66, 177, 428, 456
NheI	GCTAGC	1 cut(s)	335
NlaIV	GGNNCC	1 cut(s)	466
NmeAIII	GCCGAG	1 cut(s)	607
NmuCI	GTSAC	2 cut(s)	404, 527
PcsI	WCGNNNNNNNCGW	5 cut(s)	45, 285, 360, 375, 483
PfeI	GAWTC	2 cut(s)	44, 55
Pfl23II	CGTACG	2 cut(s)	211, 547
PflMI	CCANNNNNTGG	1 cut(s)	201
PfoI	TCCNGGA	1 cut(s)	461
PkrI	GCNGC	4 cut(s)	118, 218, 334, 595
PleI	GAGTC	3 cut(s)	101, 345, 487
PpsI	GAGTC	3 cut(s)	101, 345, 487
Psp1406I	AACGTT	2 cut(s)	85, 288
Psp6I	CCWGG	1 cut(s)	502
PspEI	GGTNACC	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	502
PspLI	CGTACG	2 cut(s)	211, 547
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	3 cut(s)	143, 204, 465
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	2 cut(s)	213, 549
RsaNI	GTAC	2 cut(s)	212, 548
SatI	GCNGC	4 cut(s)	117, 217, 333, 594
Sau3AI	GATC	4 cut(s)	66, 177, 428, 456
Sau96I	GGNCC	3 cut(s)	143, 204, 465
SchI	GAGTC	3 cut(s)	101, 345, 488
ScrFI	CCNGG	2 cut(s)	463, 504
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	1 cut(s)	259
SinI	GGWCC	3 cut(s)	143, 204, 465
SsiI	CCGC	9 cut(s)	27, 117, 162, 183, 217, 273, 330, 333, 593
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	461, 502
TaaI	ACNGT	3 cut(s)	17, 199, 469
TaiI	ACGT	6 cut(s)	88, 291, 315, 381, 489, 543
TaqI	TCGA	3 cut(s)	354, 363, 477
TauI	GCSGC	4 cut(s)	119, 219, 335, 596
TfiI	GAWTC	2 cut(s)	44, 55
TscAI	CASTG	1 cut(s)	158
TseFI	GTSAC	2 cut(s)	404, 527
Tsp45I	GTSAC	2 cut(s)	404, 527
TspGWI	ACGGA	5 cut(s)	37, 54, 196, 290, 421
TspRI	CASTG	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	3 cut(s)	143, 204, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	317
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.