MD04G1165000.v1.1

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0014994
Physical Location & Seq
Forward (+)
25537282 .. 25538961
1680 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1165000.v1.1.491

Sequence Viewer

Length: 777 bp
ATGCCTCCCAACCCGCCCAAATCCTCAGTCTTGATCCACCGTGTTCACACCGCCACCTCGGCGACATCGAACACGGCGTCGTCGCAGTACCAAAACCAAAGAGGAGGAGGATCTGCTGCACTGCTACTCAACAACAATAGTAATAATAACGGTAAGAAGCGGGCCACAGTACCGGAAGCCGTGGCGCGGCACCACACGCACGCGGTGGGGCCCAACCAGTGCTGCTCCGCCGTGACTCAGGAGATCGCTGCGCCCGTGTCCACCGTGTGGTCGGTGGTGCGGCGCTTCGACAACCCGCAGGCGTACAAACACTTCGTCAAGAGCTGCCACGTCATCGAGGGCGGCGGCGACGTGGGAACGCTGCGGGAGGTGCAGGTGATATCGGGGCTGCCGGCGAACAGCAGCACGGAGAGGCTGGAGATCCTTGACGACGAAAGCCATGTCATCAGCTTCAGCATGGTGGGCGGGGACCACCGGCTGTCGAACTACAGGTCGGTGACGACACTGCACCCATCGTCGCGCGCGGGCGGCGGGACGGTGGTTGTGGAGTCGTACGTTGTCGACGTGCCGCACGGGAACACAAATGATGACACGTGTATGTTCGTGGACACTATTGTTCGATGCAACCTGCAGTCCCTCGCTCAGATCGCCGAGGATTTAGCTAGATGCAATGCTGCTGACGACTATTCAGGCAGTGGGCAGCTAGCTGCATGGCTAGGTTCTCAAGAACAAGACCACTCGACCGACGTATGCATCTCACAGCACTGGCATAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

259

Amino Acids

27.66

Weight (kDa)

6.13

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 77 - 218 1.2e-19 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38310
fragaria_vesca FvH4_6g10740
malus_domestica MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica Prupe.6G284000_v2.0.a1
pyrus_communis pycom04g14710 pycom12g16880
rosa_chinensis RchiOBHm_Chr3g0461781
rosa_laevigata RLG00000024899
rosa_multiflora Rmu_sc0004308.1_g000008
rosa_roxburghii Rroxscaffold_6G00417950
rosa_rugosa Rorug03G0053500
rosa_samantha Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana Rw3G009460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 2 cut(s) 364, 636
AccB1I GGYRCC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 267
AccI GTMKAC 1 cut(s) 561
AccII CGCG 5 cut(s) 187, 203, 520, 522, 524
AclWI GGATC 3 cut(s) 28, 118, 415
AcuI CTGAAG 1 cut(s) 436
AcvI CACGTG 1 cut(s) 594
AcyI GRCGYC 1 cut(s) 77
AdeI CACNNNGTG 2 cut(s) 205, 267
AfaI GTAC 4 cut(s) 89, 171, 305, 554
AfiI CCNNNNNNNGG 2 cut(s) 186, 267
AflIII ACRYGT 2 cut(s) 591, 593
AjiI CACGTC 3 cut(s) 331, 352, 565
AluBI AGCT 5 cut(s) 324, 450, 662, 703, 707
AluI AGCT 5 cut(s) 324, 450, 662, 703, 707
AlwI GGATC 3 cut(s) 28, 118, 415
AoxI GGCC 2 cut(s) 162, 209
ApaI GGGCCC 1 cut(s) 213
AspLEI GCGC 5 cut(s) 187, 253, 285, 522, 524
AspS9I GGNCC 4 cut(s) 162, 209, 210, 469
AsuHPI GGTGA 2 cut(s) 388, 508
AsuNHI GCTAGC 1 cut(s) 703
AvaII GGWCC 1 cut(s) 469
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 1 cut(s) 213
BarI GAAGNNNNNNTAC 2 cut(s) 296, 328
BbrPI CACGTG 1 cut(s) 594
BccI CCATC 1 cut(s) 520
BceAI ACGGC 3 cut(s) 90, 164, 215
BfaI CTAG 3 cut(s) 663, 704, 716
BfmI CTRYAG 2 cut(s) 487, 629
BfoI RGCGCY 1 cut(s) 286
BfuAI ACCTGC 2 cut(s) 364, 636
BglI GCCNNNNNGGC 1 cut(s) 59
Bme18I GGWCC 1 cut(s) 469
BmgBI CACGTC 3 cut(s) 331, 352, 565
BmgT120I GGNCC 4 cut(s) 162, 209, 210, 469
BmiI GGNNCC 4 cut(s) 191, 210, 211, 470
BmsI GCATC 3 cut(s) 611, 656, 762
BmtI GCTAGC 1 cut(s) 707
BpmI CTGGAG 1 cut(s) 437
BpuEI CTTGAG 1 cut(s) 708
BsaAI YACGTR 1 cut(s) 594
BsaHI GRCGYC 1 cut(s) 77
BsaJI CCNNGG 3 cut(s) 57, 180, 651
BsaWI WCCGGW 1 cut(s) 172
Bsc4I CCNNNNNNNGG 2 cut(s) 186, 267
Bse118I RCCGGY 2 cut(s) 391, 474
Bse1I ACTGG 2 cut(s) 217, 770
Bse3DI GCAATG 1 cut(s) 676
BseDI CCNNGG 3 cut(s) 57, 180, 651
BseLI CCNNNNNNNGG 2 cut(s) 186, 267
BseMI GCAATG 1 cut(s) 676
BseMII CTCAG 3 cut(s) 39, 251, 656
BseNI ACTGG 2 cut(s) 217, 770
BsePI GCGCGC 1 cut(s) 520
BseRI GAGGAG 2 cut(s) 117, 120
BseSI GKGCMC 1 cut(s) 213
BsgI GTGCAG 3 cut(s) 102, 392, 491
Bsh1236I CGCG 5 cut(s) 187, 203, 520, 522, 524
Bsh1285I CGRYCG 1 cut(s) 744
BshFI GGCC 2 cut(s) 164, 211
BshNI GGYRCC 1 cut(s) 189
BsiEI CGRYCG 1 cut(s) 744
BsiSI CCGG 3 cut(s) 173, 392, 475
BsiWI CGTACG 1 cut(s) 552
BslFI GGGAC 3 cut(s) 482, 547, 619
BslI CCNNNNNNNGG 2 cut(s) 186, 267
BsmFI GGGAC 3 cut(s) 482, 547, 619
BsnI GGCC 2 cut(s) 164, 211
Bsp120I GGGCCC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 5 cut(s) 33, 110, 243, 420, 645
BspANI GGCC 2 cut(s) 164, 211
BspCNI CTCAG 3 cut(s) 38, 250, 655
BspFNI CGCG 5 cut(s) 187, 203, 520, 522, 524
BspLI GGNNCC 4 cut(s) 191, 210, 211, 470
BspMAI CTGCAG 1 cut(s) 633
BspMI ACCTGC 2 cut(s) 364, 636
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 3 cut(s) 28, 118, 415
BspT107I GGYRCC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 676
BsrFI RCCGGY 2 cut(s) 391, 474
BsrI ACTGG 2 cut(s) 217, 770
BssAI RCCGGY 2 cut(s) 391, 474
BssECI CCNNGG 3 cut(s) 57, 180, 651
BssHII GCGCGC 1 cut(s) 520
BssMI GATC 5 cut(s) 33, 110, 243, 420, 645
BssNI GRCGYC 1 cut(s) 77
Bst4CI ACNGT 5 cut(s) 41, 152, 169, 265, 538
BstACI GRCGYC 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 594
BstC8I GCNNGC 7 cut(s) 162, 201, 300, 393, 522, 526, 705
BstDEI CTNAG 3 cut(s) 25, 237, 642
BstDSI CCRYGG 1 cut(s) 180
BstFNI CGCG 5 cut(s) 187, 203, 520, 522, 524
BstH2I RGCGCY 1 cut(s) 286
BstHHI GCGC 5 cut(s) 187, 253, 285, 522, 524
BstKTI GATC 5 cut(s) 36, 113, 246, 423, 648
BstMBI GATC 5 cut(s) 33, 110, 243, 420, 645
BstMCI CGRYCG 1 cut(s) 744
BstMWI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
BstSFI CTRYAG 2 cut(s) 487, 629
BstSLI GKGCMC 1 cut(s) 213
BstUI CGCG 5 cut(s) 187, 203, 520, 522, 524
BstX2I RGATCY 2 cut(s) 110, 420
BstYI RGATCY 2 cut(s) 110, 420
BsuRI GGCC 2 cut(s) 164, 211
BtgI CCRYGG 1 cut(s) 180
BtrI CACGTC 3 cut(s) 331, 352, 565
BtsI GCAGTG 3 cut(s) 119, 503, 700
BtsIMutI CAGTG 5 cut(s) 119, 224, 503, 700, 763
BveI ACCTGC 2 cut(s) 364, 636
Cac8I GCNNGC 7 cut(s) 162, 201, 300, 393, 522, 526, 705
CfoI GCGC 5 cut(s) 187, 253, 285, 522, 524
Cfr10I RCCGGY 2 cut(s) 391, 474
Cfr13I GGNCC 4 cut(s) 162, 209, 210, 469
CseI GACGC 1 cut(s) 66
Csp6I GTAC 4 cut(s) 88, 170, 304, 553
CviAII CATG 3 cut(s) 440, 457, 711
CviQI GTAC 4 cut(s) 88, 170, 304, 553
DdeI CTNAG 3 cut(s) 25, 237, 642
DpnI GATC 5 cut(s) 35, 112, 245, 422, 647
DpnII GATC 5 cut(s) 33, 110, 243, 420, 645
DraIII CACNNNGTG 2 cut(s) 205, 267
EciI GGCGGA 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 469
Eco57I CTGAAG 1 cut(s) 436
Eco72I CACGTG 1 cut(s) 594
EcoO109I RGGNCCY 1 cut(s) 209
EcoRV GATATC 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 755
EcoT38I GRGCYC 1 cut(s) 213
FaeI CATG 3 cut(s) 443, 460, 714
FaiI YATR 6 cut(s) 441, 458, 599, 712, 751, 771
FaqI GGGAC 3 cut(s) 482, 547, 619
FatI CATG 3 cut(s) 439, 456, 710
FauI CCCGC 7 cut(s) 21, 153, 303, 357, 458, 517, 524
FblI GTMKAC 1 cut(s) 561
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 3 cut(s) 663, 704, 716
GlaI GCGC 5 cut(s) 186, 252, 284, 521, 523
GsuI CTGGAG 1 cut(s) 437
HaeII RGCGCY 1 cut(s) 286
HaeIII GGCC 2 cut(s) 164, 211
HapII CCGG 3 cut(s) 173, 392, 475
HgaI GACGC 1 cut(s) 66
HhaI GCGC 5 cut(s) 187, 253, 285, 522, 524
Hin1I GRCGYC 1 cut(s) 77
Hin1II CATG 3 cut(s) 443, 460, 714
Hin6I GCGC 5 cut(s) 185, 251, 283, 520, 522
HinP1I GCGC 5 cut(s) 185, 251, 283, 520, 522
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 2 cut(s) 235, 548
HpaII CCGG 3 cut(s) 173, 392, 475
HphI GGTGA 2 cut(s) 388, 508
Hpy166II GTNNAC 4 cut(s) 46, 261, 562, 607
Hpy188I TCNGA 1 cut(s) 645
Hpy188III TCNNGA 4 cut(s) 31, 239, 319, 725
Hpy8I GTNNAC 4 cut(s) 46, 261, 562, 607
Hpy99I CGWCG 7 cut(s) 82, 85, 353, 434, 520, 566, 749
HpyCH4III ACNGT 5 cut(s) 41, 152, 169, 265, 538
HpyCH4IV ACGT 6 cut(s) 330, 351, 555, 564, 593, 747
HpyCH4V TGCA 8 cut(s) 119, 373, 508, 624, 631, 669, 710, 753
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
HpyF3I CTNAG 3 cut(s) 25, 237, 642
HpySE526I ACGT 6 cut(s) 330, 351, 555, 564, 593, 747
Hsp92I GRCGYC 1 cut(s) 77
Hsp92II CATG 3 cut(s) 443, 460, 714
HspAI GCGC 5 cut(s) 185, 251, 283, 520, 522
KroI GCCGGC 1 cut(s) 391
KroNI GCCGGC 1 cut(s) 393
Kzo9I GATC 5 cut(s) 33, 110, 243, 420, 645
LmnI GCTCC 1 cut(s) 230
LweI GCATC 3 cut(s) 611, 656, 762
MaeI CTAG 3 cut(s) 663, 704, 716
MaeII ACGT 6 cut(s) 330, 351, 555, 564, 593, 747
MaeIII GTNAC 2 cut(s) 232, 496
MalI GATC 5 cut(s) 35, 112, 245, 422, 647
MauBI CGCGCGCG 1 cut(s) 520
MboI GATC 5 cut(s) 33, 110, 243, 420, 645
MflI RGATCY 2 cut(s) 110, 420
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 772
MlyI GAGTC 2 cut(s) 229, 557
Mph1103I ATGCAT 1 cut(s) 755
MroNI GCCGGC 1 cut(s) 391
MslI CAYNNNNRTG 1 cut(s) 596
MspI CCGG 3 cut(s) 173, 392, 475
MvnI CGCG 5 cut(s) 187, 203, 520, 522, 524
MwoI GCNNNNNNNGC 6 cut(s) 59, 196, 370, 462, 528, 647
NaeI GCCGGC 1 cut(s) 393
NdeII GATC 5 cut(s) 33, 110, 243, 420, 645
NgoMIV GCCGGC 1 cut(s) 391
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 3 cut(s) 443, 460, 714
NlaIV GGNNCC 4 cut(s) 191, 210, 211, 470
NmeAIII GCCGAG 2 cut(s) 38, 676
NmuCI GTSAC 2 cut(s) 232, 496
NsiI ATGCAT 1 cut(s) 755
PaqCI CACCTGC 1 cut(s) 364
PauI GCGCGC 1 cut(s) 520
PcsI WCGNNNNNNNCGW 4 cut(s) 65, 74, 252, 561
PdiI GCCGGC 1 cut(s) 393
Pfl23II CGTACG 1 cut(s) 552
PflMI CCANNNNNTGG 1 cut(s) 267
PleI GAGTC 2 cut(s) 229, 556
PmaCI CACGTG 1 cut(s) 594
PmlI CACGTG 1 cut(s) 594
PpsI GAGTC 2 cut(s) 229, 556
Ppu21I YACGTR 1 cut(s) 594
PspCI CACGTG 1 cut(s) 594
PspLI CGTACG 1 cut(s) 552
PspN4I GGNNCC 4 cut(s) 191, 210, 211, 470
PspOMI GGGCCC 1 cut(s) 209
PspPI GGNCC 4 cut(s) 162, 209, 210, 469
PstI CTGCAG 1 cut(s) 633
PsuI RGATCY 2 cut(s) 110, 420
PteI GCGCGC 1 cut(s) 520
RsaI GTAC 4 cut(s) 89, 171, 305, 554
RsaNI GTAC 4 cut(s) 88, 170, 304, 553
RseI CAYNNNNRTG 1 cut(s) 596
SalI GTCGAC 1 cut(s) 560
Sau3AI GATC 5 cut(s) 33, 110, 243, 420, 645
Sau96I GGNCC 4 cut(s) 162, 209, 210, 469
SchI GAGTC 2 cut(s) 229, 557
SduI GDGCHC 1 cut(s) 213
SfaNI GCATC 3 cut(s) 611, 656, 762
SfcI CTRYAG 2 cut(s) 487, 629
SinI GGWCC 1 cut(s) 469
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 1 cut(s) 772
SspMI CTAG 3 cut(s) 663, 704, 716
TaaI ACNGT 5 cut(s) 41, 152, 169, 265, 538
TaiI ACGT 6 cut(s) 333, 354, 558, 567, 596, 750
TaqI TCGA 7 cut(s) 68, 288, 336, 482, 561, 619, 740
TaqII GACCGA 1 cut(s) 758
TasI AATT 1 cut(s) 772
TauI GCSGC 6 cut(s) 190, 283, 345, 348, 531, 571
TscAI CASTG 5 cut(s) 126, 224, 510, 700, 770
TseFI GTSAC 2 cut(s) 232, 496
Tsp45I GTSAC 2 cut(s) 232, 496
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 5 cut(s) 126, 224, 510, 700, 770
Van91I CCANNNNNTGG 1 cut(s) 267
VpaK11BI GGWCC 1 cut(s) 469
XmiI GTMKAC 1 cut(s) 561
XspI CTAG 3 cut(s) 663, 704, 716
Zsp2I ATGCAT 1 cut(s) 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.