Rroxscaffold_6G00417950

Abscisic acid receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0014994
Physical Location & Seq
Forward (+)
39497996 .. 39498883
888 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00417950.1

Sequence Viewer

Length: 762 bp
ATGCCTCCCAACCCGCCCAAGTCTTCTGTATTGTTCCACCGCGTCAACACCGCGTCCCCGCACCAGAACCAGAAGGGCATGATGATCAGGAAGCAGCGCGGCCCGATCCCCGACGCGGTGGCGCGTTACCACACGCACGGGGTCGGCCCCGACAAGTGCTGCTCCGCCGTGACGCAGGAGATCGCTGCTCCCGTCTCCACCGTGTGGTCGGTGGTCCGGCGCTTCGACAACCCCCAAGGCTACAAGCACTTCGTCAAGAGCTGCCACGTCATCGTCGGGGACGGCGACGTCGGCACGCTTCGCGAGGTCCAGGTCATCTCGGGGCTTCCGGCCAACAGCAGCACGGAGAGGCTGGACGTGCTGGACGAGGAGAGCCACGTCATCAGCTTCAGCATGGTGGGCGGCGACCACAGGCTGTCGAACTACAAGTCGGTGACGACGCTTCACCCGTCACCCGCGGGCGGCGGAGGCACGGTGGTTGTGGAGTCTTACGTGGTGGACGTGCCGCCGGGAAACACCAAGGACGACACGTGTAACTTTGTGGACACTATCGTACGGTGCAACCTGCAGTCGCTGGCTCAGATCGCGGAGAATCTTGCGAGACGTAACAACAAGTCCGCGTCCGCGTGCCCCAATCTATTAGGTTTCGTCGAACATCATTGTCTGAGGGGAGTTGTCCCGAGTCCGGTCTGTGTTTGCCGTTGGAGGGTACGGCGTCGTTTTGTATCCGATGAAACAGTCACAGCAAGTTTGGTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 ko04075 map04016 map04075
Pfam Domains
Protein Families
Polyketide_cyc2

Protein Analysis

253

Amino Acids

27.51

Weight (kDa)

8.76

Isoelectric Point (pI)

47.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Polyketide_cyc2 PF10604 56 - 197 6.1e-20 Polyketide cyclase / dehydrase and lipid transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014994)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G38310
fragaria_vesca FvH4_6g10740
malus_domestica MD04G1165000.v1.1 MD12G1178800.v1.1
prunus_persica Prupe.6G284000_v2.0.a1
pyrus_communis pycom04g14710 pycom12g16880
rosa_chinensis RchiOBHm_Chr3g0461781
rosa_laevigata RLG00000024899
rosa_multiflora Rmu_sc0004308.1_g000008
rosa_roxburghii Rroxscaffold_6G00417950
rosa_rugosa Rorug03G0053500
rosa_samantha Rh3BG114800 Rh3CG117100 Rh3DG116600
rosa_wichuraiana Rw3G009460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 287
AatII GACGTC 1 cut(s) 291
Acc36I ACCTGC 1 cut(s) 573
AccB7I CCANNNNNTGG 1 cut(s) 204
AclWI GGATC 1 cut(s) 100
AcoI YGGCCR 1 cut(s) 330
AcuI CTGAAG 1 cut(s) 373
AcvI CACGTG 1 cut(s) 531
AcyI GRCGYC 2 cut(s) 288, 715
AdeI CACNNNGTG 1 cut(s) 204
AfaI GTAC 2 cut(s) 555, 711
AfiI CCNNNNNNNGG 5 cut(s) 115, 204, 461, 685, 706
AflIII ACRYGT 2 cut(s) 528, 530
AjiI CACGTC 4 cut(s) 268, 358, 379, 502
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 2 cut(s) 261, 387
AluI AGCT 2 cut(s) 261, 387
Alw26I GTCTC 2 cut(s) 199, 595
AlwI GGATC 1 cut(s) 100
AlwNI CAGNNNCTG 1 cut(s) 574
Ama87I CYCGRG 2 cut(s) 319, 679
AoxI GGCC 3 cut(s) 100, 145, 330
ApeKI GCWGC 5 cut(s) 94, 159, 185, 261, 339
ArsI GACNNNNNNTTYG 2 cut(s) 413, 445
AspLEI GCGC 3 cut(s) 99, 124, 222
AspS9I GGNCC 4 cut(s) 101, 146, 214, 307
AsuC2I CCSGG 1 cut(s) 510
AsuHPI GGTGA 3 cut(s) 437, 444, 445
AvaI CYCGRG 2 cut(s) 319, 679
AvaII GGWCC 2 cut(s) 214, 307
BaeGI GKGCMC 1 cut(s) 632
BbrPI CACGTG 1 cut(s) 531
BbsI GAAGAC 1 cut(s) 15
BbvI GCAGC 5 cut(s) 106, 146, 172, 248, 351
BceAI ACGGC 4 cut(s) 152, 298, 684, 728
BciT130I CCWGG 1 cut(s) 311
BciVI GTATCC 1 cut(s) 736
BclI TGATCA 1 cut(s) 84
BcnI CCSGG 1 cut(s) 510
BcoDI GTCTC 2 cut(s) 199, 595
BfmI CTRYAG 1 cut(s) 566
BfoI RGCGCY 1 cut(s) 223
BfuAI ACCTGC 1 cut(s) 573
BfuI GTATCC 1 cut(s) 736
BisI GCNGC 9 cut(s) 95, 100, 160, 186, 262, 340, 403, 463, 506
BlsI GCNGC 9 cut(s) 96, 101, 161, 187, 263, 341, 404, 464, 507
Bme1390I CCNGG 2 cut(s) 311, 510
Bme18I GGWCC 2 cut(s) 214, 307
BmeT110I CYCGRG 2 cut(s) 319, 679
BmgBI CACGTC 4 cut(s) 268, 358, 379, 502
BmgT120I GGNCC 4 cut(s) 101, 146, 214, 307
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 311, 510
BpiI GAAGAC 1 cut(s) 15
BpuMI CCSGG 1 cut(s) 510
BsaAI YACGTR 2 cut(s) 493, 531
BsaHI GRCGYC 2 cut(s) 288, 715
BsaJI CCNNGG 3 cut(s) 235, 456, 519
BsaWI WCCGGW 1 cut(s) 685
BsaXI ACNNNNNCTCC 2 cut(s) 459, 489
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 204, 461, 685, 706
BseBI CCWGG 1 cut(s) 311
BseDI CCNNGG 3 cut(s) 235, 456, 519
BseLI CCNNNNNNNGG 5 cut(s) 115, 204, 461, 685, 706
BseMII CTCAG 2 cut(s) 593, 656
BseRI GAGGAG 1 cut(s) 383
BseSI GKGCMC 1 cut(s) 632
BseXI GCAGC 5 cut(s) 106, 146, 172, 248, 351
BshFI GGCC 3 cut(s) 102, 147, 332
BsiHKCI CYCGRG 2 cut(s) 319, 679
BsiSI CCGG 4 cut(s) 217, 329, 509, 686
BsiWI CGTACG 1 cut(s) 553
BslFI GGGAC 3 cut(s) 40, 293, 662
BslI CCNNNNNNNGG 5 cut(s) 115, 204, 461, 685, 706
BsmAI GTCTC 2 cut(s) 199, 595
BsmBI CGTCTC 2 cut(s) 199, 595
BsmFI GGGAC 3 cut(s) 40, 293, 662
BsnI GGCC 3 cut(s) 102, 147, 332
BsoBI CYCGRG 2 cut(s) 319, 679
Bsp1286I GDGCHC 1 cut(s) 632
Bsp143I GATC 4 cut(s) 84, 105, 180, 582
Bsp68I TCGCGA 1 cut(s) 303
BspANI GGCC 3 cut(s) 102, 147, 332
BspCNI CTCAG 2 cut(s) 592, 657
BspLI GGNNCC 1 cut(s) 148
BspMAI CTGCAG 1 cut(s) 570
BspMI ACCTGC 1 cut(s) 573
BspPI GGATC 1 cut(s) 100
BssECI CCNNGG 3 cut(s) 235, 456, 519
BssMI GATC 4 cut(s) 84, 105, 180, 582
BssNI GRCGYC 2 cut(s) 288, 715
BssT1I CCWWGG 2 cut(s) 235, 519
Bst2UI CCWGG 1 cut(s) 311
Bst4CI ACNGT 4 cut(s) 202, 475, 558, 739
BstACI GRCGYC 2 cut(s) 288, 715
BstBAI YACGTR 2 cut(s) 493, 531
BstC8I GCNNGC 4 cut(s) 296, 460, 576, 628
BstDEI CTNAG 2 cut(s) 579, 665
BstDSI CCRYGG 1 cut(s) 456
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 3 cut(s) 99, 124, 222
BstKTI GATC 4 cut(s) 87, 108, 183, 585
BstMAI GTCTC 2 cut(s) 199, 595
BstMBI GATC 4 cut(s) 84, 105, 180, 582
BstMWI GCNNNNNNNGC 6 cut(s) 291, 300, 358, 399, 468, 584
BstNI CCWGG 1 cut(s) 311
BstSCI CCNGG 2 cut(s) 309, 508
BstSFI CTRYAG 1 cut(s) 566
BstSLI GKGCMC 1 cut(s) 632
BstV1I GCAGC 5 cut(s) 106, 146, 172, 248, 351
BstV2I GAAGAC 1 cut(s) 15
BsuI GTATCC 1 cut(s) 736
BsuRI GGCC 3 cut(s) 102, 147, 332
BtgI CCRYGG 1 cut(s) 456
BtrI CACGTC 4 cut(s) 268, 358, 379, 502
BtuMI TCGCGA 1 cut(s) 303
BveI ACCTGC 1 cut(s) 573
Cac8I GCNNGC 4 cut(s) 296, 460, 576, 628
CaiI CAGNNNCTG 1 cut(s) 574
CfoI GCGC 3 cut(s) 99, 124, 222
Cfr13I GGNCC 4 cut(s) 101, 146, 214, 307
Cfr42I CCGCGG 1 cut(s) 459
CseI GACGC 7 cut(s) 31, 42, 122, 181, 448, 609, 704
Csp6I GTAC 2 cut(s) 554, 710
CviAII CATG 2 cut(s) 79, 394
CviQI GTAC 2 cut(s) 554, 710
DdeI CTNAG 2 cut(s) 579, 665
DpnI GATC 4 cut(s) 86, 107, 182, 584
DpnII GATC 4 cut(s) 84, 105, 180, 582
DraIII CACNNNGTG 1 cut(s) 204
DrdI GACNNNNNNGTC 1 cut(s) 287
DseDI GACNNNNNNGTC 1 cut(s) 287
EaeI YGGCCR 1 cut(s) 330
EciI GGCGGA 2 cut(s) 154, 480
Eco130I CCWWGG 2 cut(s) 235, 519
Eco47I GGWCC 2 cut(s) 214, 307
Eco57I CTGAAG 1 cut(s) 373
Eco72I CACGTG 1 cut(s) 531
Eco88I CYCGRG 2 cut(s) 319, 679
EcoRII CCWGG 1 cut(s) 309
EcoT14I CCWWGG 2 cut(s) 235, 519
ErhI CCWWGG 2 cut(s) 235, 519
Esp3I CGTCTC 2 cut(s) 199, 595
FaeI CATG 2 cut(s) 82, 397
FaiI YATR 2 cut(s) 80, 395
FaqI GGGAC 3 cut(s) 40, 293, 662
FatI CATG 2 cut(s) 78, 393
FauI CCCGC 4 cut(s) 21, 66, 451, 463
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 9 cut(s) 95, 100, 160, 186, 262, 340, 403, 463, 506
Fsp4HI GCNGC 9 cut(s) 95, 100, 160, 186, 262, 340, 403, 463, 506
GlaI GCGC 3 cut(s) 98, 123, 221
GluI GCNGC 9 cut(s) 95, 100, 160, 186, 262, 340, 403, 463, 506
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 3 cut(s) 102, 147, 332
HapII CCGG 4 cut(s) 217, 329, 509, 686
HgaI GACGC 7 cut(s) 31, 42, 122, 181, 448, 609, 704
HhaI GCGC 3 cut(s) 99, 124, 222
Hin1I GRCGYC 2 cut(s) 288, 715
Hin1II CATG 2 cut(s) 82, 397
Hin6I GCGC 3 cut(s) 97, 122, 220
HinP1I GCGC 3 cut(s) 97, 122, 220
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 3 cut(s) 485, 592, 682
HpaII CCGG 4 cut(s) 217, 329, 509, 686
HphI GGTGA 3 cut(s) 437, 444, 445
Hpy166II GTNNAC 3 cut(s) 46, 499, 544
Hpy188I TCNGA 3 cut(s) 582, 666, 730
Hpy188III TCNNGA 4 cut(s) 88, 256, 302, 679
Hpy8I GTNNAC 3 cut(s) 46, 499, 544
Hpy99I CGWCG 7 cut(s) 116, 278, 290, 293, 442, 653, 720
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 4 cut(s) 202, 475, 558, 739
HpyCH4IV ACGT 8 cut(s) 267, 288, 357, 378, 492, 501, 530, 604
HpyCH4V TGCA 2 cut(s) 561, 568
HpyF10VI GCNNNNNNNGC 6 cut(s) 291, 300, 358, 399, 468, 584
HpyF3I CTNAG 2 cut(s) 579, 665
HpySE526I ACGT 8 cut(s) 267, 288, 357, 378, 492, 501, 530, 604
Hsp92I GRCGYC 2 cut(s) 288, 715
Hsp92II CATG 2 cut(s) 82, 397
HspAI GCGC 3 cut(s) 97, 122, 220
Ksp22I TGATCA 1 cut(s) 84
KspI CCGCGG 1 cut(s) 459
Kzo9I GATC 4 cut(s) 84, 105, 180, 582
LmnI GCTCC 2 cut(s) 167, 193
Lsp1109I GCAGC 5 cut(s) 106, 146, 172, 248, 351
MaeII ACGT 8 cut(s) 267, 288, 357, 378, 492, 501, 530, 604
MaeIII GTNAC 7 cut(s) 125, 169, 433, 450, 533, 605, 739
MalI GATC 4 cut(s) 86, 107, 182, 584
MboI GATC 4 cut(s) 84, 105, 180, 582
MboII GAAGA 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 632
MlyI GAGTC 2 cut(s) 494, 691
MmeI TCCRAC 1 cut(s) 683
MnlI CCTC 7 cut(s) 15, 298, 342, 361, 461, 660, 699
MspA1I CMGCKG 1 cut(s) 458
MspI CCGG 4 cut(s) 217, 329, 509, 686
MspR9I CCNGG 2 cut(s) 311, 510
MvaI CCWGG 1 cut(s) 311
MwoI GCNNNNNNNGC 6 cut(s) 291, 300, 358, 399, 468, 584
NciI CCSGG 1 cut(s) 510
NdeII GATC 4 cut(s) 84, 105, 180, 582
NlaIII CATG 2 cut(s) 82, 397
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 4 cut(s) 169, 433, 450, 739
NruI TCGCGA 1 cut(s) 303
PcsI WCGNNNNNNNCGW 5 cut(s) 189, 282, 363, 446, 498
PfeI GAWTC 1 cut(s) 592
Pfl23II CGTACG 1 cut(s) 553
PflMI CCANNNNNTGG 1 cut(s) 204
PkrI GCNGC 9 cut(s) 96, 101, 161, 187, 263, 341, 404, 464, 507
PleI GAGTC 2 cut(s) 493, 690
PmaCI CACGTG 1 cut(s) 531
PmlI CACGTG 1 cut(s) 531
PpsI GAGTC 2 cut(s) 493, 690
Ppu21I YACGTR 2 cut(s) 493, 531
Psp6I CCWGG 1 cut(s) 309
PspCI CACGTG 1 cut(s) 531
PspGI CCWGG 1 cut(s) 309
PspLI CGTACG 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 4 cut(s) 101, 146, 214, 307
PstI CTGCAG 1 cut(s) 570
PstNI CAGNNNCTG 1 cut(s) 574
RruI TCGCGA 1 cut(s) 303
RsaI GTAC 2 cut(s) 555, 711
RsaNI GTAC 2 cut(s) 554, 710
SacII CCGCGG 1 cut(s) 459
SatI GCNGC 9 cut(s) 95, 100, 160, 186, 262, 340, 403, 463, 506
Sau3AI GATC 4 cut(s) 84, 105, 180, 582
Sau96I GGNCC 4 cut(s) 101, 146, 214, 307
SchI GAGTC 2 cut(s) 494, 691
ScrFI CCNGG 2 cut(s) 311, 510
SduI GDGCHC 1 cut(s) 632
SfcI CTRYAG 1 cut(s) 566
Sfr303I CCGCGG 1 cut(s) 459
SgrBI CCGCGG 1 cut(s) 459
SinI GGWCC 2 cut(s) 214, 307
StyD4I CCNGG 2 cut(s) 309, 508
StyI CCWWGG 2 cut(s) 235, 519
TaaI ACNGT 4 cut(s) 202, 475, 558, 739
TaiI ACGT 8 cut(s) 270, 291, 360, 381, 495, 504, 533, 607
TaqI TCGA 3 cut(s) 225, 419, 651
TauI GCSGC 4 cut(s) 102, 405, 465, 508
TfiI GAWTC 1 cut(s) 592
TseFI GTSAC 4 cut(s) 169, 433, 450, 739
TseI GCWGC 5 cut(s) 94, 159, 185, 261, 339
Tsp45I GTSAC 4 cut(s) 169, 433, 450, 739
TspDTI ATGAA 1 cut(s) 747
TspGWI ACGGA 1 cut(s) 359
Van91I CCANNNNNTGG 1 cut(s) 204
VpaK11BI GGWCC 2 cut(s) 214, 307
ZraI GACGTC 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.